CuGenDBv2

Gene ID	Cmc04g0097351
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Genome location	CMiso1.1chr04:12401449..12406702
RNA-Seq Expression	Cmc04g0097351
Synteny	Cmc04g0097351
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	IPR021883 - Protein LOW PSII ACCUMULATION 1-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_004152010.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus]

6.8e-176

94.38

Show/hide

Query:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSL T  ISSFNNIAPPPHFSPTPSHNA DFKF RRSY  VHRKTVSFSSSPRLPVSLRF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVTTLNFEFD+REEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_008447350.1 PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo]

3.8e-187

99.41

Show/hide

Query:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLSTLI+SSFNNIAPPPHFSPTPSHNAPDFKFCRRS FHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_022963501.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata]

6.2e-153

83.83

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Query:  LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFF
        +S  II S NN   PPH S T SHNA + KFCRR   HVHR  VSF+  P +  SLR+  Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFF
Subjt:  LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFF

Query:  YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC
        YLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVIC
Subjt:  YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC

Query:  AGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG
        AGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNFEFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRG
Subjt:  AGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG

Query:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_023554665.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita pepo subsp. pepo]

1.8e-152

83.53

Show/hide

Query:  LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFF
        +S  II S NN   PPH S T SHNA + KFCRR   HVHR  VSF+  P +  SLR+  Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFF
Subjt:  LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFF

Query:  YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC
        YLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVIC
Subjt:  YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC

Query:  AGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG
        AGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNFEFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRG
Subjt:  AGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG

Query:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

XP_038888898.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]

1.1e-160

89.05

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Query:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLST  ISS NNI  PPHFS T      DFKF RR   HVHRKT+SF+SSP LP SL    Y RRNLAN+  SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF++EAFKSSEPFTE+LLERGVLVVPLATDV+TLNFEFDEREEVKD+T+KRK+LWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L902 Uncharacterized protein

3.3e-176

94.38

Show/hide

Query:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSL T  ISSFNNIAPPPHFSPTPSHNA DFKF RRSY  VHRKTVSFSSSPRLPVSLRF VYGRRNLAN+I SAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDIL+GLG+DFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESF+IEAFKSSEPFTE+LLERGVLVVPLATDVTTLNFEFD+REEVKDIT+KRK+LWRLTPVYMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A1S3BHU5 protein LOW PSII ACCUMULATION 1, chloroplastic

1.9e-187

99.41

Show/hide

Query:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLSTLI+SSFNNIAPPPHFSPTPSHNAPDFKFCRRS FHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A5D3BG35 Protein LOW PSII ACCUMULATION 1

1.9e-187

99.41

Show/hide

Query:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
        MAVSLSTLI+SSFNNIAPPPHFSPTPSHNAPDFKFCRRS FHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV
Subjt:  MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSV

Query:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
        RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR
Subjt:  RMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIAR

Query:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
        LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG
Subjt:  LVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDG

Query:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  RVRGSGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1HGA1 protein LOW PSII ACCUMULATION 1, chloroplastic

3.0e-153

83.83

Show/hide

Query:  LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFF
        +S  II S NN   PPH S T SHNA + KFCRR   HVHR  VSF+  P +  SLR+  Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFF
Subjt:  LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFF

Query:  YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC
        YLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL GLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVIC
Subjt:  YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC

Query:  AGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG
        AGPESF++EAFK+SEPFTE+LLERGVLV+P ATD ++LNFEFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRG
Subjt:  AGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG

Query:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

A0A6J1HWD0 protein LOW PSII ACCUMULATION 1, chloroplastic

9.6e-152

82.93

Show/hide

Query:  LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFF
        +S  II S NN   PPH S T SHNA + KFCRR   HVHR  VSF+  P +  SLR+  Y RRNLA+   SA+DKPEISSTAKIRSEVLSPFRSVRMFF
Subjt:  LSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFF

Query:  YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC
        YLTFIASGTLGGLIATTQLL ALAN+SRA+EVPDIL GLGIDFGAVA FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVIC
Subjt:  YLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVIC

Query:  AGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG
        AGPES ++EAFK+SEPFTE+LLERGVLV+P ATD ++LNFEFDEREE+KDIT+KRK+LWRLTPVYM++WSAWLD+QKKLAGVSSDSPVYLSLRMDGRVRG
Subjt:  AGPESFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRG

Query:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
        SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL
Subjt:  SGVGYPPWNALVAQLPPVKGLWSGLLDGMDGRVL

SwissProt top hits

e value

%identity

Alignment

Q9SRY4 Protein LOW PSII ACCUMULATION 1, chloroplastic

4.8e-31

31.7

Show/hide

Query:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN
        K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N
Subjt:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN

Query:  KVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEFDEREEVKDITSKRKK--LWR
        +V+ +  LR   R VI AG +  V  A + ++ F  +LL RGVL+VP+                     AT + ++  +FD R +     SK K    ++
Subjt:  KVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEFDEREEVKDITSKRKK--LWR

Query:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
           V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

Arabidopsis top hits

e value

%identity

Alignment

AT1G02910.1 tetratricopeptide repeat (TPR)-containing protein

3.4e-32

31.7

Show/hide

Query:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN
        K+ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ G + +   L+  EN  +  Q+ +++R+E+LS L LR+  N
Subjt:  KIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQN

Query:  KVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEFDEREEVKDITSKRKK--LWR
        +V+ +  LR   R VI AG +  V  A + ++ F  +LL RGVL+VP+                     AT + ++  +FD R +     SK K    ++
Subjt:  KVIPISTLRGIARLVICAGPESFVIEAFKSSEPFTEQLLERGVLVVPL---------------------ATDVTTLNFEFDEREEVKDITSKRKK--LWR

Query:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL
           V   EW  W+ +Q+   GV+    VY+ LR+DGRVR SG G P W  +  +LPP+  + S L
Subjt:  LTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGL

AT4G28740.1 FUNCTIONS IN: molecular_function unknown

6.9e-102

60.75

Show/hide

Query:  HFSPTPSHNAPDFKFCRRSYFHVHRKTVSFS-SSPRLPVSLRFHVYGRRNLANYIYSAADKP-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLI
        H S    + A +    RR   H HR+ + FS  + RL ++ +          N +  AAD+P EIS+ A+IRSEVLSPFRSVRMFFYL FIASG+LGGLI
Subjt:  HFSPTPSHNAPDFKFCRRSYFHVHRKTVSFS-SSPRLPVSLRFHVYGRRNLANYIYSAADKP-EISSTAKIRSEVLSPFRSVRMFFYLTFIASGTLGGLI

Query:  ATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFVIEAFKS
        AT++L+GALAN +R+ EV +I+KGLG+D GA +LFAFLYF EN  KNAQ+ARLSREE+L  LK+RV++ NKVI +  LRG+ARLVICAGP  F+ EAFK 
Subjt:  ATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFVIEAFKS

Query:  SEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEV-KDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALV
        S+ +T+ L+ERGV+VV  ATD  +   EFDE +   ++++ +RKKLWR+TPV++ EW  WL+EQKKLA VSSDSPVYLSLR+DGRVR SGVGYPPW A V
Subjt:  SEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEV-KDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALV

Query:  AQLPPVKGLWSGLLDGMDGRV
        AQLPPVKG+W+GLLDGMDGRV
Subjt:  AQLPPVKGLWSGLLDGMDGRV

Sequences

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CDS sequence

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ATGGCGGTTTCCCTTTCCACTCTCATCATTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGCCCTCCCATAACGCTCCGGATTTCAAATTCTGCCG
CCGCAGCTACTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTTCATGTATACGGCAGACGGAATTTGGCTAACTACA
TTTACTCAGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCT
AGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGATTT
TGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAG
TGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATCCTTTGTCATTGAAGCTTTTAAATCAAGCGAACCT
TTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGTTTGATGAACGAGAAGAGGTGAAGGATATAACCTC
AAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCTCCTCTGATTCTCCCGTGTATC
TATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATTACCACCTGTAAAAGGACTATGGTCAGGTCTTCTA
GATGGGATGGATGGCAGAGTTCTTTGA

mRNA sequence

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TCAACCACTCAACAAAAACCCACTATCAACCCATTACTCCAAAATCAAATTGAAGTGATTTTAGAATTTTCAAAAATCAATTTTACTTCGTTTCAACCAACATTAATATA
AAAATCATTTTGACAGATAAAAAAAGATTTGACTATGATGATCTCAAAATCACTCCCTAACACGTAACCACGAAAAAGGTATGCAGCAGCAATTTCCTTTAAACTATTTC
CTTGTCTTCTTCATCCTTCGTTTATGGTGGCGACAAATTCTGGGTATCGTGGCGGCATCGACACCATCCCTCGAAATTTGCTTCCATTAACAAACTGTGAAACTACCTCA
CAATGTCAATTATCAGTTTCTTGAGTCCTCAATCATGGCGGTTTCCCTTTCCACTCTCATCATTTCTTCCTTCAACAACATTGCTCCACCTCCTCATTTCTCTCCCACGC
CCTCCCATAACGCTCCGGATTTCAAATTCTGCCGCCGCAGCTACTTCCATGTTCATCGAAAGACGGTATCATTTAGTTCTAGCCCTAGGCTACCAGTTTCGCTTCGTTTT
CATGTATACGGCAGACGGAATTTGGCTAACTACATTTACTCAGCTGCTGATAAACCGGAAATCAGTTCCACAGCCAAGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTC
TGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGGTGCATTGGCAAACTCATCAAGAGCTGATGAAG
TCCCTGATATTCTAAAAGGACTTGGAATAGATTTTGGAGCCGTAGCTCTTTTTGCATTTCTTTATTTCAGAGAAAACAATGCAAAAAATGCTCAATTGGCTAGACTGTCA
AGAGAAGAAAGCCTTTCCAACTTAAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATCTGTGCTGGCCCTGAATC
CTTTGTCATTGAAGCTTTTAAATCAAGCGAACCTTTCACTGAACAACTTCTAGAACGGGGTGTTTTAGTTGTACCCCTTGCCACAGATGTGACTACACTGAATTTTGAGT
TTGATGAACGAGAAGAGGTGAAGGATATAACCTCAAAAAGGAAAAAACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAG
TTGGCTGGAGTCTCCTCTGATTCTCCCGTGTATCTATCTCTGCGAATGGATGGCCGTGTTCGTGGTAGTGGTGTTGGCTATCCTCCATGGAATGCTCTTGTAGCACAATT
ACCACCTGTAAAAGGACTATGGTCAGGTCTTCTAGATGGGATGGATGGCAGAGTTCTTTGAAGAAAAACACCCCCTCTTCTTTCGAGTACTCTGAAATTGAGTCCTTACC
ATGGAGTGGACTAAACTTTGGTTATCATCTTTAAACTATCAAAGATACTTCCACTTGGAAAGCTCTAACACCATTGTTAAGCTGGACTGCCTGAGAAATACAGGTTTTTG
TAGAGTTAAAAGGAGAGATTTTGCTTATCCATTCATAAATCTTATATTTTTATTGTCTAGATTCCAACATTATTAGTTATTAGTTATTTTTGCTCCAGCAATCTGATTGT
ATGGGTGCAATTTGTTAATAGTTAGTTGAATGTGTATTTGTAAAGCAATTATACATGGAGCGTGATGTAAATAACCATGCGTTTCTTTGTTTCTCTTTGGTCCTGTTTGG
GAACATTAACTAAGCTAAAAGTTAGCAGTAATGGGTTATTTTAGCTCATCTTACATCTTTGGTACTAATTATAATAATGGTCTATAGAATTGTACTATTTCAAATCTTTG
GTTTCAACTGTATTTATTATTTTGTTACTGTATTCACTA

Protein sequence

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MAVSLSTLIISSFNNIAPPPHFSPTPSHNAPDFKFCRRSYFHVHRKTVSFSSSPRLPVSLRFHVYGRRNLANYIYSAADKPEISSTAKIRSEVLSPFRSVRMFFYLTFIA
SGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFGAVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFVIEAFKSSEP
FTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPVYMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSGLL
DGMDGRVL

Cmc04g0097351 (gene) of Melon (Charmono) v1.1 genome