; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0097911 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0097911
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:13145779..13146702
RNA-Seq ExpressionCmc04g0097911
SyntenyCmc04g0097911
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046085.1 pol protein [Cucumis melo var. makuwa]4.9e-15792.51Show/hide
Query:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS
        +RASKLLSQGTW IL SVVDT EVDVSLSSEPVVRD+PDVFPEELPGLPP RE+EFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVS
Subjt:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS

Query:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM
        PWGAPVLFVKKKD SM+LCIDYRELNKVTVKN+YPLPRID+LFDQLQGA VFSKIDLRSGYH LRIKD DVPKTAFRSRY HYEFI+MSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL

Query:  GLAGYYR
         LAGYYR
Subjt:  GLAGYYR

KAA0047433.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-15792.51Show/hide
Query:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS
        +RASKLLSQGTW IL SVVDT EVDVSLSSEPVVRD+PDVFPEELPGLPP RE+EFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVS
Subjt:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS

Query:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM
        PWGAPVLFVKKKD SM+LCIDYRELNKVTVKN+YPLPRID+LFDQLQGA VFSKIDLRSGYH LRIKD DVPKTAFRSRY HYEFI+MSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL

Query:  GLAGYYR
        GLAGYYR
Subjt:  GLAGYYR

KAA0048687.1 pol protein [Cucumis melo var. makuwa]2.9e-15792.51Show/hide
Query:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS
        +RASKLLSQGTW IL SVVDT E DVSLSSEPVVRD+PDVFPEELPGLPP RE+EFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVS
Subjt:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS

Query:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM
        PWGAPVLFVKKKD SM+LCIDYRELNKVTVKN+YPLPRID+LFDQLQGA VFSKIDLRSGYH LRIKD DVPKTAFRSRY HYEFI+MSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL

Query:  GLAGYYR
        GLAGYYR
Subjt:  GLAGYYR

KAA0066266.1 pol protein [Cucumis melo var. makuwa]2.9e-15792.51Show/hide
Query:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS
        +RASKLLSQGTW IL SVVDT E DVSLSSEPVVRD+PDVFPEELPGLPP RE+EFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVS
Subjt:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS

Query:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM
        PWGAPVLFVKKKD SM+LCIDYRELNKVTVKN+YPLPRID+LFDQLQGA VFSKIDLRSGYH LRIKD DVPKTAFRSRY HYEFI+MSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL

Query:  GLAGYYR
        GLAGYYR
Subjt:  GLAGYYR

TYK01613.1 pol protein [Cucumis melo var. makuwa]2.9e-15792.51Show/hide
Query:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS
        +RASKLLSQGTW IL SVVDT E DVSLSSEPVVRD+PDVFPEELPGLPP RE+EFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVS
Subjt:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS

Query:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM
        PWGAPVLFVKKKD SM+LCIDYRELNKVTVKN+YPLPRID+LFDQLQGA VFSKIDLRSGYH LRIKD DVPKTAFRSRY HYEFI+MSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL

Query:  GLAGYYR
        GLAGYYR
Subjt:  GLAGYYR

TrEMBL top hitse value%identityAlignment
A0A5A7TV57 Ty3-gypsy retrotransposon protein1.4e-15792.51Show/hide
Query:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS
        +RASKLLSQGTW IL SVVDT EVDVSLSSEPVVRD+PDVFPEELPGLPP RE+EFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVS
Subjt:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS

Query:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM
        PWGAPVLFVKKKD SM+LCIDYRELNKVTVKN+YPLPRID+LFDQLQGA VFSKIDLRSGYH LRIKD DVPKTAFRSRY HYEFI+MSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL

Query:  GLAGYYR
        GLAGYYR
Subjt:  GLAGYYR

A0A5A7TXE4 Reverse transcriptase2.4e-15792.51Show/hide
Query:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS
        +RASKLLSQGTW IL SVVDT EVDVSLSSEPVVRD+PDVFPEELPGLPP RE+EFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVS
Subjt:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS

Query:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM
        PWGAPVLFVKKKD SM+LCIDYRELNKVTVKN+YPLPRID+LFDQLQGA VFSKIDLRSGYH LRIKD DVPKTAFRSRY HYEFI+MSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL

Query:  GLAGYYR
         LAGYYR
Subjt:  GLAGYYR

A0A5A7U330 Reverse transcriptase1.4e-15792.51Show/hide
Query:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS
        +RASKLLSQGTW IL SVVDT E DVSLSSEPVVRD+PDVFPEELPGLPP RE+EFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVS
Subjt:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS

Query:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM
        PWGAPVLFVKKKD SM+LCIDYRELNKVTVKN+YPLPRID+LFDQLQGA VFSKIDLRSGYH LRIKD DVPKTAFRSRY HYEFI+MSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL

Query:  GLAGYYR
        GLAGYYR
Subjt:  GLAGYYR

A0A5A7VIT9 Reverse transcriptase1.4e-15792.51Show/hide
Query:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS
        +RASKLLSQGTW IL SVVDT E DVSLSSEPVVRD+PDVFPEELPGLPP RE+EFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVS
Subjt:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS

Query:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM
        PWGAPVLFVKKKD SM+LCIDYRELNKVTVKN+YPLPRID+LFDQLQGA VFSKIDLRSGYH LRIKD DVPKTAFRSRY HYEFI+MSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL

Query:  GLAGYYR
        GLAGYYR
Subjt:  GLAGYYR

A0A5D3BPI1 Reverse transcriptase1.4e-15792.51Show/hide
Query:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS
        +RASKLLSQGTW IL SVVDT E DVSLSSEPVVRD+PDVFPEELPGLPP RE+EFAIELEP TVPISRAPYRMAPAELKELKVQLQELLDKGFIR SVS
Subjt:  MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVS

Query:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM
        PWGAPVLFVKKKD SM+LCIDYRELNKVTVKN+YPLPRID+LFDQLQGA VFSKIDLRSGYH LRIKD DVPKTAFRSRY HYEFI+MSFGLTNAPAVFM
Subjt:  PWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFM

Query:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL
        DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TLR NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVT W RPSTVSEVRSFL
Subjt:  DLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFL

Query:  GLAGYYR
        GLAGYYR
Subjt:  GLAGYYR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.2e-4939Show/hide
Query:  YRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKD-----RSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRI
        Y    A  +E++ Q+Q++L++G IR+S SP+ +P+  V KK      +  ++ IDYR+LN++TV +++P+P +DE+  +L     F+ IDL  G+H + +
Subjt:  YRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKD-----RSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRI

Query:  KDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLG
            V KTAF +++ HYE++ M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V E L    L  +  KCEF  ++ +FLG
Subjt:  KDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLG

Query:  HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR
        HV++  G+  +P KIEA+  +P P+   E+++FLGL GYYR
Subjt:  HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR

P0CT34 Transposon Tf2-1 polyprotein1.9e-4735.85Show/hide
Query:  EELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDEL
        E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV KK+ ++++ +DY+ LNK    N YPLP I++L
Subjt:  EELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDEL

Query:  FDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLET
          ++QG+ +F+K+DL+S YHL+R++  D  K AFR     +E+++M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VL+ 
Subjt:  FDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLET

Query:  LRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR
        L+   L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R
Subjt:  LRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR

P0CT35 Transposon Tf2-2 polyprotein1.9e-4735.85Show/hide
Query:  EELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDEL
        E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV KK+ ++++ +DY+ LNK    N YPLP I++L
Subjt:  EELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDEL

Query:  FDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLET
          ++QG+ +F+K+DL+S YHL+R++  D  K AFR     +E+++M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VL+ 
Subjt:  FDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLET

Query:  LRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR
        L+   L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R
Subjt:  LRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR

P0CT41 Transposon Tf2-12 polyprotein1.9e-4735.85Show/hide
Query:  EELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDEL
        E+LP   P + +EF +EL      +    Y + P +++ +  ++ + L  G IR S +    PV+FV KK+ ++++ +DY+ LNK    N YPLP I++L
Subjt:  EELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKDRSMQLCIDYRELNKVTVKNKYPLPRIDEL

Query:  FDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLET
          ++QG+ +F+K+DL+S YHL+R++  D  K AFR     +E+++M +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VL+ 
Subjt:  FDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLET

Query:  LRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR
        L+   L    +KCEF   QV F+G+ +S+ G +     I+ V  W +P    E+R FLG   Y R
Subjt:  LRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR

P20825 Retrovirus-related Pol polyprotein from transposon 2971.9e-5038.87Show/hide
Query:  PISRAPYRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKD-----RSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSG
        PI    Y +A     E++ Q+QE+L++G IR S SP+ +P   V KK         ++ IDYR+LN++T+ ++YP+P +DE+  +L     F+ IDL  G
Subjt:  PISRAPYRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVKKKD-----RSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSG

Query:  YHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLK
        +H + + +  + KTAF ++  HYE++ M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L    L  +  KCEF  K
Subjt:  YHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLK

Query:  QVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR
        + +FLGH+V+  G+  +P K++A+ S+P P+   E+R+FLGL GYYR
Subjt:  QVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.5e-1549.33Show/hide
Query:  HLRMVLETLRANKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR
        HL MVL+    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+  WP P   +E+R FLGL GYYR
Subjt:  HLRMVLETLRANKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGCCAGCAAACTGCTTAGTCAGGGTACTTGGAGTATCTTAGTGAGTGTGGTGGATACTAGTGAGGTTGATGTGTCCTTGTCATCAGAACCAGTAGTGAGGGATCA
TCCAGATGTCTTTCCCGAAGAACTTCCAGGGTTACCTCCTCAGAGAGAGATTGAGTTTGCCATAGAACTGGAGCCTGTTACGGTTCCTATATCCAGAGCCCCATACAGAA
TGGCTCCAGCAGAGTTGAAAGAGCTGAAGGTGCAGTTACAAGAGTTGCTTGATAAAGGCTTCATTCGGTCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAG
AAGAAGGATCGATCGATGCAACTATGTATTGACTACAGGGAGTTGAATAAGGTCACCGTTAAGAACAAATATCCCTTGCCTAGGATCGACGAACTTTTTGACCAGTTACA
GGGAGCTATAGTGTTCTCTAAGATCGACCTTCGGTCTGGATATCATCTGCTGAGGATTAAGGATAGCGATGTACCAAAGACAGCCTTTCGTTCCAGATATAGACACTATG
AGTTTATTCTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTCATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGAT
GATATTTTGATATATTCTAAGACAGAGGCCGAGCATGAGGAGCATTTACGCATGGTTCTAGAAACCCTTCGAGCTAATAAATTATATGCAAAGTTCTCAAAATGTGAGTT
TTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTAGTTGGCCTCGACCTTCTACAGTTA
GTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTACCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGCCAGCAAACTGCTTAGTCAGGGTACTTGGAGTATCTTAGTGAGTGTGGTGGATACTAGTGAGGTTGATGTGTCCTTGTCATCAGAACCAGTAGTGAGGGATCA
TCCAGATGTCTTTCCCGAAGAACTTCCAGGGTTACCTCCTCAGAGAGAGATTGAGTTTGCCATAGAACTGGAGCCTGTTACGGTTCCTATATCCAGAGCCCCATACAGAA
TGGCTCCAGCAGAGTTGAAAGAGCTGAAGGTGCAGTTACAAGAGTTGCTTGATAAAGGCTTCATTCGGTCGAGTGTGTCACCTTGGGGTGCACCAGTCTTATTTGTTAAG
AAGAAGGATCGATCGATGCAACTATGTATTGACTACAGGGAGTTGAATAAGGTCACCGTTAAGAACAAATATCCCTTGCCTAGGATCGACGAACTTTTTGACCAGTTACA
GGGAGCTATAGTGTTCTCTAAGATCGACCTTCGGTCTGGATATCATCTGCTGAGGATTAAGGATAGCGATGTACCAAAGACAGCCTTTCGTTCCAGATATAGACACTATG
AGTTTATTCTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTCATGGATTTGATGAACAGAGTGTTTAGAGAGTTCCTAGACACTTTTGTGATCGTGTTTATTGAT
GATATTTTGATATATTCTAAGACAGAGGCCGAGCATGAGGAGCATTTACGCATGGTTCTAGAAACCCTTCGAGCTAATAAATTATATGCAAAGTTCTCAAAATGTGAGTT
TTGGTTGAAGCAGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACTAGTTGGCCTCGACCTTCTACAGTTA
GTGAGGTTCGTAGCTTTCTGGGTTTAGCAGGTTATTACCGATGA
Protein sequenceShow/hide protein sequence
MRASKLLSQGTWSILVSVVDTSEVDVSLSSEPVVRDHPDVFPEELPGLPPQREIEFAIELEPVTVPISRAPYRMAPAELKELKVQLQELLDKGFIRSSVSPWGAPVLFVK
KKDRSMQLCIDYRELNKVTVKNKYPLPRIDELFDQLQGAIVFSKIDLRSGYHLLRIKDSDVPKTAFRSRYRHYEFILMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFID
DILIYSKTEAEHEEHLRMVLETLRANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLAGYYR