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Cmc04g0097921 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0097921
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr04:13168807..13169199
RNA-Seq ExpressionCmc04g0097921
SyntenyCmc04g0097921
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004601 - peroxidase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033505.1 peroxidase 64 [Cucumis melo var. makuwa]2.4e-4984.17Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        MEK VEEML S VIRP KSP+S+PVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEELFDELN ATLF KIDLKS YHQIRM E+DI KTAFRTHEG
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQA
        HYEFLVM FGLTNVP TFQA
Subjt:  HYEFLVMSFGLTNVPTTFQA

KAA0046886.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]2.9e-5079.07Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        MEK V+EML S VIRP  SP+SSPVLLVKKKD SWRFCV+YRV+N+ATI DKFPIPVVE+LFDEL  ATLF KIDLKS YHQIRMA+ED++KTAFRTHEG
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL
        HYEFLVM FGLTN P TFQAFDEY+ Q +
Subjt:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL

KAA0063978.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-4983.33Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        MEK V+EML SEVIRP  SP+SSPVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEELFDEL  ATLF KIDLKS YHQIRMA+EDI+KTAFRTHEG
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQA
        HYEFLVM FGLTN P TFQA
Subjt:  HYEFLVMSFGLTNVPTTFQA

TYK03261.1 peroxidase 64 [Cucumis melo var. makuwa]2.9e-5079.07Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        MEK V+EML S VIRP  SP+SSPVLLVKKKD SWRFCV+YRV+N+ATI DKFPIPVVE+LFDEL  ATLF KIDLKS YHQIRMA+ED++KTAFRTHEG
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL
        HYEFLVM FGLTN P TFQAFDEY+ Q +
Subjt:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL

TYK05163.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.1e-4983.33Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        MEK V+EML SEVIRP  SP+SSPVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEELFDEL  ATLF KIDLKS YHQIRMA+EDI+KTAFRTHEG
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQA
        HYEFLVM FGLTN P TFQA
Subjt:  HYEFLVMSFGLTNVPTTFQA

TrEMBL top hitse value%identityAlignment
A0A5A7TY34 Retrotransposable element Tf21.4e-5079.07Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        MEK V+EML S VIRP  SP+SSPVLLVKKKD SWRFCV+YRV+N+ATI DKFPIPVVE+LFDEL  ATLF KIDLKS YHQIRMA+ED++KTAFRTHEG
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL
        HYEFLVM FGLTN P TFQAFDEY+ Q +
Subjt:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL

A0A5A7V8N7 Ty3/gypsy retrotransposon protein3.5e-4983.33Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        MEK V+EML SEVIRP  SP+SSPVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEELFDEL  ATLF KIDLKS YHQIRMA+EDI+KTAFRTHEG
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQA
        HYEFLVM FGLTN P TFQA
Subjt:  HYEFLVMSFGLTNVPTTFQA

A0A5D3BU55 Peroxidase 641.4e-5079.07Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        MEK V+EML S VIRP  SP+SSPVLLVKKKD SWRFCV+YRV+N+ATI DKFPIPVVE+LFDEL  ATLF KIDLKS YHQIRMA+ED++KTAFRTHEG
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL
        HYEFLVM FGLTN P TFQAFDEY+ Q +
Subjt:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL

A0A5D3BZJ8 Ty3/gypsy retrotransposon protein3.5e-4983.33Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        MEK V+EML SEVIRP  SP+SSPVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEELFDEL  ATLF KIDLKS YHQIRMA+EDI+KTAFRTHEG
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQA
        HYEFLVM FGLTN P TFQA
Subjt:  HYEFLVMSFGLTNVPTTFQA

A0A5D3DST3 Peroxidase 641.2e-4984.17Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        MEK VEEML S VIRP KSP+S+PVLLVKKKD SWRFCV+YR +N+ATIPDKFPIPVVEELFDELN ATLF KIDLKS YHQIRM E+DI KTAFRTHEG
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQA
        HYEFLVM FGLTNVP TFQA
Subjt:  HYEFLVMSFGLTNVPTTFQA

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.0e-2241.13Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDES-----WRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAF
        +E  +++ML   +IR   SP++SP+ +V KK ++     +R  ++YR +N  T+ D+ PIP ++E+  +L     F  IDL   +HQI M  E + KTAF
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDES-----WRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAF

Query:  RTHEGHYEFLVMSFGLTNVPTTFQ
         T  GHYE+L M FGL N P TFQ
Subjt:  RTHEGHYEFLVMSFGLTNVPTTFQ

P20825 Retrovirus-related Pol polyprotein from transposon 2971.3e-2445.97Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDES-----WRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAF
        +E  V+EML   +IR   SP++SP  +V KK ++     +R  ++YR +N  TIPD++PIP ++E+  +L     F  IDL   +HQI M EE I KTAF
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDES-----WRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAF

Query:  RTHEGHYEFLVMSFGLTNVPTTFQ
         T  GHYE+L M FGL N P TFQ
Subjt:  RTHEGHYEFLVMSFGLTNVPTTFQ

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.7e-2747.29Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        + K V+++L ++ I P KSP SSPV+LV KKD ++R CV+YR +N ATI D FP+P ++ L   + +A +F  +DL S YHQI M  +D  KTAF T  G
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL
         YE+ VM FGL N P+TF  +    F+ L
Subjt:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus4.1e-2342.74Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKK-----DESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAF
        +E+ ++E+L   +IRP  SP++SP+ +V KK     ++ +R  V+++ +N+ TIPD +PIP +      L +A  F  +DL S +HQI M E DI KTAF
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKK-----DESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAF

Query:  RTHEGHYEFLVMSFGLTNVPTTFQ
         T  G YEFL + FGL N P  FQ
Subjt:  RTHEGHYEFLVMSFGLTNVPTTFQ

Q99315 Transposon Ty3-G Gag-Pol polyprotein4.7e-2747.29Show/hide
Query:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG
        + K V+++L ++ I P KSP SSPV+LV KKD ++R CV+YR +N ATI D FP+P ++ L   + +A +F  +DL S YHQI M  +D  KTAF T  G
Subjt:  MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEG

Query:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL
         YE+ VM FGL N P+TF  +    F+ L
Subjt:  HYEFLVMSFGLTNVPTTFQAFDEYHFQTL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAACCAGTTGAAGAGATGTTGATCTCTGAAGTAATTCGACCAAGAAAAAGTCCTTTCTCAAGTCCTGTTCTTCTGGTTAAAAAGAAGGATGAAAGTTGGCGTTT
CTGTGTCAATTACCGAGTGATCAATAGTGCTACTATACCCGATAAGTTTCCGATACCGGTTGTGGAAGAGTTGTTCGATGAGCTAAATGATGCCACCTTATTTTTAAAGA
TTGACTTGAAGTCTGACTACCATCAAATAAGAATGGCAGAAGAAGATATTCAAAAAACGGCTTTTAGAACTCATGAAGGTCACTACGAGTTCCTTGTAATGTCGTTTGGA
TTAACAAATGTGCCAACCACCTTTCAAGCATTTGATGAATACCATTTTCAAACCTTATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAACCAGTTGAAGAGATGTTGATCTCTGAAGTAATTCGACCAAGAAAAAGTCCTTTCTCAAGTCCTGTTCTTCTGGTTAAAAAGAAGGATGAAAGTTGGCGTTT
CTGTGTCAATTACCGAGTGATCAATAGTGCTACTATACCCGATAAGTTTCCGATACCGGTTGTGGAAGAGTTGTTCGATGAGCTAAATGATGCCACCTTATTTTTAAAGA
TTGACTTGAAGTCTGACTACCATCAAATAAGAATGGCAGAAGAAGATATTCAAAAAACGGCTTTTAGAACTCATGAAGGTCACTACGAGTTCCTTGTAATGTCGTTTGGA
TTAACAAATGTGCCAACCACCTTTCAAGCATTTGATGAATACCATTTTCAAACCTTATCTTAG
Protein sequenceShow/hide protein sequence
MEKPVEEMLISEVIRPRKSPFSSPVLLVKKKDESWRFCVNYRVINSATIPDKFPIPVVEELFDELNDATLFLKIDLKSDYHQIRMAEEDIQKTAFRTHEGHYEFLVMSFG
LTNVPTTFQAFDEYHFQTLS