; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0098971 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0098971
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr04:14723658..14724416
RNA-Seq ExpressionCmc04g0098971
SyntenyCmc04g0098971
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]1.1e-13393.65Show/hide
Query:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA
        MDVIGPI PK SN HRF LV+IDYFTKWIE AS+CNVTR VVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPY PKMNGA+EA
Subjt:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA

Query:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
        ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEK+LAALNH QLY
Subjt:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY

Query:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF
        QRRLMRAYNKKVHPRSFRE DLVLKR+L FQKDHRGKWTPNYEGPFVVKK F
Subjt:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF

KAA0038143.1 Pol polyprotein [Cucumis melo var. makuwa]3.5e-13796.83Show/hide
Query:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA
        MDVIGPI PK SN HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPY PKMN AIEA
Subjt:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA

Query:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
        ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
Subjt:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY

Query:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF
        QRRLMRAYNKKVHPRSFREEDLVLKRLL FQKDHR KWTPNYEGPFVVKK F
Subjt:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]2.6e-13292.06Show/hide
Query:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA
        +DVIGPI PK SN HRFILVAIDYFTKWIEAASYCNVTR VVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE+FKINHRNSTPY PKMNGA+EA
Subjt:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA

Query:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
        ANKNIKRIIEKMT TYKDWHE+LPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEK+L AL+HGQLY
Subjt:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY

Query:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF
        Q+RLMRAYNKKVHPRSFRE DLVLKR+L F KDHRGKWTPNYEGPFVVKK F
Subjt:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]2.6e-13292.06Show/hide
Query:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA
        +DVIGPI PK SN HRFILVAIDYFTKWIEAASYCNVTR VVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE+FKINHRNSTPY PKMNGA+EA
Subjt:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA

Query:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
        ANKNIKRIIEKMT TYKDWHE+LPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEK+L AL+HGQLY
Subjt:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY

Query:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF
        Q+RLMRAYNKKVHPRSFRE DLVLKR+L F KDHRGKWTPNYEGPFVVKK F
Subjt:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF

XP_031742240.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116404130 [Cucumis sativus]2.6e-13292.06Show/hide
Query:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA
        +DVIGPI PK SN HRFILVAIDYFTKWIEAASYCNVTR VVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCE+FKINHRNSTPY PKMNGA+EA
Subjt:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA

Query:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
        ANKNIKRIIEKMT TYKDWHE+LPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEK+L AL+HGQLY
Subjt:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY

Query:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF
        Q+RLMRAYNKKVHPRSFRE DLVLKR+L F KDHRGKWTPNYEGPFVVKK F
Subjt:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF

TrEMBL top hitse value%identityAlignment
A0A5A7T1D0 RNA-directed DNA polymerase6.1e-12790.48Show/hide
Query:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA
        MDVIGPI PKTSN HRFILV IDYFTKWIEAASY NVTR VVLKFIKKE ICRYGL E IITDNAKNLNNKMMDELCEQFKINHRNSTPY PKMNG +E 
Subjt:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA

Query:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
        ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGA PF LVYGME VLPLEVE PSLRVL+EAKLDEAEWIRGRYEQLNFVEEKQL ALNH QLY
Subjt:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY

Query:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF
        QRRLMRAYNKKVH RSFRE DLVLKR+L FQKDHRGKWTPNYEGPFVVKK F
Subjt:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF

A0A5A7T570 Pol polyprotein1.7e-13796.83Show/hide
Query:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA
        MDVIGPI PK SN HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPY PKMN AIEA
Subjt:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA

Query:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
        ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
Subjt:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY

Query:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF
        QRRLMRAYNKKVHPRSFREEDLVLKRLL FQKDHR KWTPNYEGPFVVKK F
Subjt:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF

A0A5A7T7R4 Ribonuclease H5.2e-13493.65Show/hide
Query:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA
        MDVIGPI PK SN HRF LV+IDYFTKWIE AS+CNVTR VVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPY PKMNGA+EA
Subjt:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA

Query:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
        ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEK+LAALNH QLY
Subjt:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY

Query:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF
        QRRLMRAYNKKVHPRSFRE DLVLKR+L FQKDHRGKWTPNYEGPFVVKK F
Subjt:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF

A0A5A7VCB5 Putative RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H1.2e-12277.1Show/hide
Query:  MDVIGPIVPKTSNSHRFILVA---------------------------------------------IDYFTKWIEAASYCNVTRRVVLKFIKKELICRYG
        M+VIGPI PK SN HRFILV                                              IDYFTKWIE ASYCNVTR VVLKFIKKEL CRYG
Subjt:  MDVIGPIVPKTSNSHRFILVA---------------------------------------------IDYFTKWIEAASYCNVTRRVVLKFIKKELICRYG

Query:  LPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPL
        LPEGIITDN KNLNNKMMDELCEQFKINH+NST Y PKMNGA+EAANKNIKRIIEKMTIT+KDWHEMLPFALHGY  SVRTSTGATPFSL YGMEAVLPL
Subjt:  LPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPL

Query:  EVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLYQRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF
        EVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEK+LAALNHGQLYQRRLMRAYNKKVHPRSFRE DLVLKR+L FQKDHRGKWTPNYEGPFVVK +F
Subjt:  EVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLYQRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF

A0A5D3E1A3 RNA-directed DNA polymerase5.2e-12689.68Show/hide
Query:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA
        MDVIGPI PKTSN H FILV IDYFTKWIEAASY NV R VVLKFIKKE ICRYGL E IITDNAKNLNNKMMDELCEQFKINHRNSTPY PKMNG +E 
Subjt:  MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEA

Query:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY
        ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGA PF LVYGME VLPLEVE PSLRVL+EAKLDEAEWIRGRYEQLNFVEEKQL ALNH QLY
Subjt:  ANKNIKRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLY

Query:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF
        QRRLMRAYNKKVH RSFRE DLVLKR+L FQKDHRGKWTPNYEGPFVVKK F
Subjt:  QRRLMRAYNKKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF

SwissProt top hitse value%identityAlignment
P03360 Gag-Pol polyprotein (Fragment)2.7e-1532.85Show/hide
Query:  HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTI
        ++++LV +D F+ W+EA      T +VV+K +  ++I R+GLP  I +DN      K+  +LCE   ++ +    Y P+ +G +E  N+ +K  I K+ I
Subjt:  HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTI

Query:  -TYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGME
         T  DW  +LP AL   R +     G +PF ++YG++
Subjt:  -TYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGME

P26808 Gag-Pol polyprotein3.6e-1526.27Show/hide
Query:  HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTI
        ++++LV +D F+ W+EA      T +VV K + +E+  R+G+P+ + TDN     +K+   + +   ++ +    Y P+ +G +E  N+ IK  + K+T+
Subjt:  HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTI

Query:  T--YKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLYQRRLMRAYNKKV
            +DW  +LP AL+  R +     G TP+ ++YG     P  V  P   +   AK+     ++   + L  V+ +    L     YQ +L    ++ V
Subjt:  T--YKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLYQRRLMRAYNKKV

Query:  HPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVV
         P  FR  D V  R     +       P ++GP+ V
Subjt:  HPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVV

P26809 Gag-Pol polyprotein2.7e-1526.69Show/hide
Query:  HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTI
        ++++LV ID F+ W+EA      T +VV K + +E+  R+G+P+ + TDN     +K+   + +   ++ +    Y P+ +G +E  N+ IK  + K+T+
Subjt:  HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTI

Query:  T--YKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLYQRRLMRAYNKKV
            +DW  +LP AL+  R +     G TP+ ++YG     P  V  P   +   AK+     ++   + L  V+ +    L     YQ +L    ++ V
Subjt:  T--YKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLYQRRLMRAYNKKV

Query:  HPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVV
         P  FR  D V  R     +       P ++GP+ V
Subjt:  HPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVV

P26810 Gag-Pol polyprotein3.6e-1526.27Show/hide
Query:  HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTI
        ++++LV +D F+ W+EA      T +VV K + +E+  R+G+P+ + TDN     +K+   + +   ++ +    Y P+ +G +E  N+ IK  + K+T+
Subjt:  HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTI

Query:  T--YKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLYQRRLMRAYNKKV
            +DW  +LP AL+  R +     G TP+ ++YG     P  V  P   +   AK+     ++   + L  V+ +    L     YQ +L    ++ V
Subjt:  T--YKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLYQRRLMRAYNKKV

Query:  HPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVV
         P  FR  D V  R     +       P ++GP+ V
Subjt:  HPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVV

Q2F7J3 Gag-Pol polyprotein6.1e-1525.52Show/hide
Query:  HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTI
        ++++LV +D F+ W+EA      T +VV K + +++  R+G+P+ + +DN     +++   + +   I+ +    Y P+ +G +E  N+ IK  + K+T+
Subjt:  HRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNIKRIIEKMTI

Query:  T--YKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEE---KQLAALNHGQLYQRRLMRAYN
            +DW  +LP AL+  R +     G TP+ ++YG    L +    P +     +KL  +  ++   + L  V++   K LAA    QL         +
Subjt:  T--YKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEE---KQLAALNHGQLYQRRLMRAYN

Query:  KKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVV
        + V P  FR  D V  R     +       P ++GP+ V
Subjt:  KKVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGTTATTGGACCCATTGTTCCTAAAACCTCAAATAGCCATCGTTTTATTCTTGTGGCCATTGATTACTTCACTAAATGGATAGAGGCTGCATCTTATTGC
AATGTTACAAGGAGAGTAGTGCTCAAGTTTATCAAGAAAGAGCTTATATGTCGTTATGGTCTCCCAGAAGGTATTATTACGGATAATGCCAAGAACCTTAATAAC
AAAATGATGGACGAACTTTGTGAGCAGTTCAAGATCAATCACCGAAATTCGACTCCATATCACCCAAAGATGAATGGGGCAATTGAGGCAGCTAACAAAAATATT
AAAAGAATCATTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGTTGCATGGATATCGCACATCAGTTCGTACTTCAACAGGAGCA
ACACCATTTTCTTTAGTTTATGGTATGGAAGCTGTTTTACCTTTAGAAGTTGAGATACCTTCATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGG
ATACGAGGTCGTTATGAGCAGTTGAATTTCGTTGAAGAAAAACAGTTGGCAGCATTAAATCATGGGCAACTTTACCAAAGAAGACTAATGCGAGCATACAATAAG
AAAGTGCATCCTCGAAGCTTTCGAGAGGAAGATTTGGTATTAAAAAGATTACTTTCGTTTCAAAAGGATCATCGAGGAAAATGGACTCCTAATTATGAAGGACCA
TTTGTAGTGAAAAAAGTTTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATGTTATTGGACCCATTGTTCCTAAAACCTCAAATAGCCATCGTTTTATTCTTGTGGCCATTGATTACTTCACTAAATGGATAGAGGCTGCATCTTATTGC
AATGTTACAAGGAGAGTAGTGCTCAAGTTTATCAAGAAAGAGCTTATATGTCGTTATGGTCTCCCAGAAGGTATTATTACGGATAATGCCAAGAACCTTAATAAC
AAAATGATGGACGAACTTTGTGAGCAGTTCAAGATCAATCACCGAAATTCGACTCCATATCACCCAAAGATGAATGGGGCAATTGAGGCAGCTAACAAAAATATT
AAAAGAATCATTGAGAAAATGACAATAACATACAAAGATTGGCATGAAATGCTACCGTTTGCGTTGCATGGATATCGCACATCAGTTCGTACTTCAACAGGAGCA
ACACCATTTTCTTTAGTTTATGGTATGGAAGCTGTTTTACCTTTAGAAGTTGAGATACCTTCATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGG
ATACGAGGTCGTTATGAGCAGTTGAATTTCGTTGAAGAAAAACAGTTGGCAGCATTAAATCATGGGCAACTTTACCAAAGAAGACTAATGCGAGCATACAATAAG
AAAGTGCATCCTCGAAGCTTTCGAGAGGAAGATTTGGTATTAAAAAGATTACTTTCGTTTCAAAAGGATCATCGAGGAAAATGGACTCCTAATTATGAAGGACCA
TTTGTAGTGAAAAAAGTTTTTTAG
Protein sequenceShow/hide protein sequence
MDVIGPIVPKTSNSHRFILVAIDYFTKWIEAASYCNVTRRVVLKFIKKELICRYGLPEGIITDNAKNLNNKMMDELCEQFKINHRNSTPYHPKMNGAIEAANKNI
KRIIEKMTITYKDWHEMLPFALHGYRTSVRTSTGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFVEEKQLAALNHGQLYQRRLMRAYNK
KVHPRSFREEDLVLKRLLSFQKDHRGKWTPNYEGPFVVKKVF