; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0099061 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0099061
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr04:14825344..14825862
RNA-Seq ExpressionCmc04g0099061
SyntenyCmc04g0099061
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038150.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.7e-8097.5Show/hide
Query:  VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYR
        VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFI FQIKQDETGIFFSQEKYAKNLISKFRMDKAKPK+TPAATHLKLTKDAT EQVDSSLYR
Subjt:  VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYR

Query:  SIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
        SIIGSLLNL ASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
Subjt:  SIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT

KAA0038409.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.7e-6277.85Show/hide
Query:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI
        +YV+DIIFGGTSS YV+QFV QM  EFEMSMVGELTFF+ FQIKQ+ TGIFFSQ+KY KNLISKF MDKA+PKRTPAATHLK+TKD  GE+VD++LYRSI
Subjt:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI

Query:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
        IGSLL L ASRPDIAFAVG+ ARYQADP  SHL SAKRILKYI  T N+ +WYT+DTT
Subjt:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT

KAA0056162.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.1e-6483.12Show/hide
Query:  VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYR
        VQIYV+DIIFGGTSS YV+QFVNQMKGEFE+SMVGELTFF+ FQIKQ +T IFFSQEKYAKNLISKF MDKAKP         KLTKDAT E+VDSSLYR
Subjt:  VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYR

Query:  SIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
        SIIGSLL LTASRPDIAF VG+CARYQAD RTSHL SAKRILKYIIGTCNF LWYTFDTT
Subjt:  SIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT

KAA0065488.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.3e-6177.99Show/hide
Query:  QIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRS
        +IYV+DIIF  TS  YV +FV QMKGEFEM+MVGELTFF+ FQI+Q+ET IFFSQEKYAKNLISKF MDKAKPKRTP  THLK+TKD TGE+VDSSL++S
Subjt:  QIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRS

Query:  IIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
        II SLL LTASRPDIAFAVG+CARY+ADPRTSHL S KRILKYI  T  + LWYTFDTT
Subjt:  IIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT

TYJ96981.1 putative mitochondrial protein [Cucumis melo var. makuwa]6.7e-6378.48Show/hide
Query:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI
        +YV+DIIFGGTSS YV+QFV QM  EFEMSMVGELTFF+ FQIKQ+ TGIFFSQ+KY KNLISKF MDKA+PKRTPAA HLK+TKD  GE+VD++LYRSI
Subjt:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI

Query:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
        IGSLL LTASR DIAF VG+CARYQADP TSHL SAKRILKYI GT N+ +WYT+DTT
Subjt:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT

TrEMBL top hitse value%identityAlignment
A0A5A7TAN0 Putative mitochondrial protein4.7e-6277.85Show/hide
Query:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI
        +YV+DIIFGGTSS YV+QFV QM  EFEMSMVGELTFF+ FQIKQ+ TGIFFSQ+KY KNLISKF MDKA+PKRTPAATHLK+TKD  GE+VD++LYRSI
Subjt:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI

Query:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
        IGSLL L ASRPDIAFAVG+ ARYQADP  SHL SAKRILKYI  T N+ +WYT+DTT
Subjt:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT

A0A5A7UJW3 Putative mitochondrial protein2.9e-6483.12Show/hide
Query:  VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYR
        VQIYV+DIIFGGTSS YV+QFVNQMKGEFE+SMVGELTFF+ FQIKQ +T IFFSQEKYAKNLISKF MDKAKP         KLTKDAT E+VDSSLYR
Subjt:  VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYR

Query:  SIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
        SIIGSLL LTASRPDIAF VG+CARYQAD RTSHL SAKRILKYIIGTCNF LWYTFDTT
Subjt:  SIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT

A0A5A7VCX5 Putative gag-pol polyprotein6.1e-6277.99Show/hide
Query:  QIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRS
        +IYV+DIIF  TS  YV +FV QMKGEFEM+MVGELTFF+ FQI+Q+ET IFFSQEKYAKNLISKF MDKAKPKRTP  THLK+TKD TGE+VDSSL++S
Subjt:  QIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRS

Query:  IIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
        II SLL LTASRPDIAFAVG+CARY+ADPRTSHL S KRILKYI  T  + LWYTFDTT
Subjt:  IIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT

A0A5D3BEA0 Putative mitochondrial protein3.3e-6378.48Show/hide
Query:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI
        +YV+DIIFGGTSS YV+QFV QM  EFEMSMVGELTFF+ FQIKQ+ TGIFFSQ+KY KNLISKF MDKA+PKRTPAA HLK+TKD  GE+VD++LYRSI
Subjt:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI

Query:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
        IGSLL LTASR DIAF VG+CARYQADP TSHL SAKRILKYI GT N+ +WYT+DTT
Subjt:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT

A0A5D3DA69 Putative mitochondrial protein1.3e-8097.5Show/hide
Query:  VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYR
        VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFI FQIKQDETGIFFSQEKYAKNLISKFRMDKAKPK+TPAATHLKLTKDAT EQVDSSLYR
Subjt:  VQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYR

Query:  SIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
        SIIGSLLNL ASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT
Subjt:  SIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.3e-1328.48Show/hide
Query:  EFVIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDS
        E + V +YV+D++        +  F   +  +F M+ + E+  FI  +I+  E  I+ SQ  Y K ++SKF M+      TP  + +      + E  ++
Subjt:  EFVIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDS

Query:  SLYRSIIGSLLN-LTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDL
           RS+IG L+  +  +RPD+  AV + +RY +   +   Q+ KR+L+Y+ GT +  L
Subjt:  SLYRSIIGSLLN-LTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.4e-1732.5Show/hide
Query:  FVIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETG--IFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVD
        F+I+ +YV+D++  G     + +    +   F+M  +G     +  +I ++ T   ++ SQEKY + ++ +F M  AKP  TP A HLKL+K      V+
Subjt:  FVIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETG--IFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVD

Query:  SS------LYRSIIGSLL-NLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGT
                 Y S +GSL+  +  +RPDIA AVG+ +R+  +P   H ++ K IL+Y+ GT
Subjt:  SS------LYRSIIGSLL-NLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGT

P25600 Putative transposon Ty5-1 protein YCL074W3.6e-1127.04Show/hide
Query:  VIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETG-IFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSS
        + + +YV+D++    S     +   ++   + M  +G++  F+   I Q   G I  S + Y     S+  ++  K  +TP      L +  +    D +
Subjt:  VIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETG-IFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSS

Query:  LYRSIIGSLL-NLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWY
         Y+SI+G LL      RPDI++ V + +R+  +PR  HL+SA+R+L+Y+  T +  L Y
Subjt:  LYRSIIGSLL-NLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWY

P92519 Uncharacterized mitochondrial protein AtMg008108.1e-1934.25Show/hide
Query:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI
        +YV+DI+  G+S+  +   + Q+   F M  +G + +F+  QIK   +G+F SQ KYA+ +++   M   KP  TP    L  +  +T +  D S +RSI
Subjt:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI

Query:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGT
        +G+L  LT +RPDI++AV +  +   +P  +     KR+L+Y+ GT
Subjt:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGT

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.1e-2032.53Show/hide
Query:  MFIYRQGTEFVIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKD
        +F+ ++G   V + +YV+DI+  G     +   ++ +   F +    EL +F+  + K+  TG+  SQ +Y  +L+++  M  AKP  TP A   KL+  
Subjt:  MFIYRQGTEFVIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKD

Query:  ATGEQVDSSLYRSIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLW
        +  +  D + YR I+GSL  L  +RPDI++AV   +++   P   HLQ+ KRIL+Y+ GT N  ++
Subjt:  ATGEQVDSSLYRSIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLW

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.5e-2032.93Show/hide
Query:  FIYRQGTEFVIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDA
        F+    T F+ V +YV+DII    + A V +  +Q+K  F++  +G L +F+  +I +   GI   Q KYA +L+ +  +   KP   P    +  +  +
Subjt:  FIYRQGTEFVIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDA

Query:  TGEQVDSSLYRSIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYT
         G+ VD+  YR +IG L+ L  +R DI+FAV   +++   PR +H Q+  +IL YI GT    L+Y+
Subjt:  TGEQVDSSLYRSIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYT

ATMG00240.1 Gag-Pol-related retrotransposon family protein4.4e-0435.42Show/hide
Query:  LTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYT
        LT +RPD+ FAV   +++ +  RT+ +Q+  ++L Y+ GT    L+Y+
Subjt:  LTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYT

ATMG00810.1 DNA/RNA polymerases superfamily protein5.7e-2034.25Show/hide
Query:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI
        +YV+DI+  G+S+  +   + Q+   F M  +G + +F+  QIK   +G+F SQ KYA+ +++   M   KP  TP    L  +  +T +  D S +RSI
Subjt:  IYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSLYRSI

Query:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGT
        +G+L  LT +RPDI++AV +  +   +P  +     KR+L+Y+ GT
Subjt:  IGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCATATATCGACAAGGTACTGAATTTGTGATAGTGCAGATCTATGTTGAGGACATTATATTTGGTGGCACGTCCTCTGCGTATGTTAAACAATTTGTTAATCAGAT
GAAGGGAGAATTTGAAATGAGCATGGTTGGTGAACTGACATTCTTCATAGAATTTCAGATTAAACAAGACGAAACAGGGATTTTCTTTTCTCAAGAAAAATATGCAAAGA
ATCTCATCTCCAAGTTTAGAATGGATAAGGCCAAACCTAAACGAACACCAGCTGCTACTCATCTGAAATTGACAAAGGATGCCACTGGAGAACAAGTTGATTCAAGTCTA
TACAGAAGTATCATTGGTAGTTTACTCAACCTCACAGCCAGCAGACCAGATATAGCTTTTGCAGTAGGCATGTGTGCTCGTTATCAGGCTGACCCTCGAACGTCTCATCT
TCAAAGTGCTAAACGCATACTGAAATATATAATAGGTACGTGTAATTTCGATCTTTGGTATACTTTTGATACAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCATATATCGACAAGGTACTGAATTTGTGATAGTGCAGATCTATGTTGAGGACATTATATTTGGTGGCACGTCCTCTGCGTATGTTAAACAATTTGTTAATCAGAT
GAAGGGAGAATTTGAAATGAGCATGGTTGGTGAACTGACATTCTTCATAGAATTTCAGATTAAACAAGACGAAACAGGGATTTTCTTTTCTCAAGAAAAATATGCAAAGA
ATCTCATCTCCAAGTTTAGAATGGATAAGGCCAAACCTAAACGAACACCAGCTGCTACTCATCTGAAATTGACAAAGGATGCCACTGGAGAACAAGTTGATTCAAGTCTA
TACAGAAGTATCATTGGTAGTTTACTCAACCTCACAGCCAGCAGACCAGATATAGCTTTTGCAGTAGGCATGTGTGCTCGTTATCAGGCTGACCCTCGAACGTCTCATCT
TCAAAGTGCTAAACGCATACTGAAATATATAATAGGTACGTGTAATTTCGATCTTTGGTATACTTTTGATACAACTTGA
Protein sequenceShow/hide protein sequence
MFIYRQGTEFVIVQIYVEDIIFGGTSSAYVKQFVNQMKGEFEMSMVGELTFFIEFQIKQDETGIFFSQEKYAKNLISKFRMDKAKPKRTPAATHLKLTKDATGEQVDSSL
YRSIIGSLLNLTASRPDIAFAVGMCARYQADPRTSHLQSAKRILKYIIGTCNFDLWYTFDTT