; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0099671 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0099671
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:15487386..15488294
RNA-Seq ExpressionCmc04g0099671
SyntenyCmc04g0099671
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035138.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]7.2e-16995.36Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPL +PEWKWEHITMDFLFGLPRTSSGH GIWVIVDRLT T RFIPIKMT 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        TLDQLARLYVDKIVSQY VPVSIVS RDPRFTSKFWPSLQKAMGTGLKFSTSFHPQ DGQSERT+QTLEDMLRACVLQLKGSWDTHLPLMEF YNNNYQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE
        SIGMAPYEALYGRPCRTPVCWNEVGE+KLVGPELVQITTNNIKLIRENLRIAQDRQKSY DKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYI 
Subjt:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE

Query:  SY
        SY
Subjt:  SY

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.6e-16895.36Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRP GFLNPL +PEWKWEHITMDFLFGLPRTSSGH GIWVIVDRLT T RFIPIKMT 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        TLDQLARLYVDKIVSQYGVPVSIVS RDPRFTSKFWPSLQKAMGTGLKFSTSFHPQ DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE
        SIGMAPYEALYGRPCRTPVCWNEVGE+KLVGPELVQITTNNIKLIRENLR AQDRQKSY DKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYI 
Subjt:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE

Query:  SY
         Y
Subjt:  SY

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.6e-16895.36Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRP GFLNPL +PEWKWEHITMDFLFGLPRTSSGH GIWVIVDRLT T RFIPIKMT 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        TLDQLARLYVDKIVSQYGVPVSIVS RDPRFTSKFWPSLQKAMGTGLKFSTSFHPQ DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE
        SIGMAPYEALYGRPCRTPVCWNEVGE+KLVGPELVQITTNNIKLIRENLR AQDRQKSY DKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYI 
Subjt:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE

Query:  SY
         Y
Subjt:  SY

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.6e-16895.36Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRP GFLNPL +PEWKWEHITMDFLFGLPRTSSGH GIWVIVDRLT T RFIPIKMT 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        TLDQLARLYVDKIVSQYGVPVSIVS RDPRFTSKFWPSLQKAMGTGLKFSTSFHPQ DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE
        SIGMAPYEALYGRPCRTPVCWNEVGE+KLVGPELVQITTNNIKLIRENLR AQDRQKSY DKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYI 
Subjt:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE

Query:  SY
         Y
Subjt:  SY

KAA0059912.1 reverse transcriptase [Cucumis melo var. makuwa]3.6e-16895.36Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRP GFLNPL +PEWKWEHITMDFLFGLPRTSSGH GIWVIVDRLT T RFIPIKMT 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        TLDQLARLYVDKIVSQYGVPVSIVS RDPRFTSKFWPSLQKAMGTGLKFSTSFHPQ DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE
        SIGMAPYEALYGRPCRTPVCWNEVGE+KLVGPELVQITTNNIKLIRENLR AQDRQKSY DKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYI 
Subjt:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE

Query:  SY
         Y
Subjt:  SY

TrEMBL top hitse value%identityAlignment
A0A5A7SX06 DNA/RNA polymerases superfamily protein3.5e-16995.36Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPL +PEWKWEHITMDFLFGLPRTSSGH GIWVIVDRLT T RFIPIKMT 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        TLDQLARLYVDKIVSQY VPVSIVS RDPRFTSKFWPSLQKAMGTGLKFSTSFHPQ DGQSERT+QTLEDMLRACVLQLKGSWDTHLPLMEF YNNNYQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE
        SIGMAPYEALYGRPCRTPVCWNEVGE+KLVGPELVQITTNNIKLIRENLRIAQDRQKSY DKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYI 
Subjt:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE

Query:  SY
        SY
Subjt:  SY

A0A5A7T1Y5 Reverse transcriptase1.7e-16895.36Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRP GFLNPL +PEWKWEHITMDFLFGLPRTSSGH GIWVIVDRLT T RFIPIKMT 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        TLDQLARLYVDKIVSQYGVPVSIVS RDPRFTSKFWPSLQKAMGTGLKFSTSFHPQ DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE
        SIGMAPYEALYGRPCRTPVCWNEVGE+KLVGPELVQITTNNIKLIRENLR AQDRQKSY DKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYI 
Subjt:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE

Query:  SY
         Y
Subjt:  SY

A0A5A7U2V7 Reverse transcriptase1.7e-16895.36Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRP GFLNPL +PEWKWEHITMDFLFGLPRTSSGH GIWVIVDRLT T RFIPIKMT 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        TLDQLARLYVDKIVSQYGVPVSIVS RDPRFTSKFWPSLQKAMGTGLKFSTSFHPQ DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE
        SIGMAPYEALYGRPCRTPVCWNEVGE+KLVGPELVQITTNNIKLIRENLR AQDRQKSY DKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYI 
Subjt:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE

Query:  SY
         Y
Subjt:  SY

A0A5D3BHI1 Reverse transcriptase1.7e-16895.36Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRP GFLNPL +PEWKWEHITMDFLFGLPRTSSGH GIWVIVDRLT T RFIPIKMT 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        TLDQLARLYVDKIVSQYGVPVSIVS RDPRFTSKFWPSLQKAMGTGLKFSTSFHPQ DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE
        SIGMAPYEALYGRPCRTPVCWNEVGE+KLVGPELVQITTNNIKLIRENLR AQDRQKSY DKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYI 
Subjt:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE

Query:  SY
         Y
Subjt:  SY

A0A5D3BS67 Reverse transcriptase1.7e-16895.36Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRP GFLNPL +PEWKWEHITMDFLFGLPRTSSGH GIWVIVDRLT T RFIPIKMT 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        TLDQLARLYVDKIVSQYGVPVSIVS RDPRFTSKFWPSLQKAMGTGLKFSTSFHPQ DGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE
        SIGMAPYEALYGRPCRTPVCWNEVGE+KLVGPELVQITTNNIKLIRENLR AQDRQKSY DKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYI 
Subjt:  SIGMAPYEALYGRPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIE

Query:  SY
         Y
Subjt:  SY

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein4.2e-3932.14Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        +HPG   +   + + + W G++++I EYV  C  CQ  K    +P G L P+   E  WE ++MDF+  LP  SSG+  ++V+VDR +  A  +P   + 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        T +Q AR++  ++++ +G P  I++  D  FTS+ W          +KFS  + PQ DGQ+ERT QT+E +LR        +W  H+ L++ +YNN   S
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYG-RPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNL-EFQVGDQVFLK
        +  M P+E ++   P  +P+   E+        E  Q T    + ++E+L     + K Y D + + + EFQ GD V +K
Subjt:  SIGMAPYEALYG-RPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNL-EFQVGDQVFLK

P0CT41 Transposon Tf2-12 polyprotein4.2e-3932.14Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        +HPG   +   + + + W G++++I EYV  C  CQ  K    +P G L P+   E  WE ++MDF+  LP  SSG+  ++V+VDR +  A  +P   + 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        T +Q AR++  ++++ +G P  I++  D  FTS+ W          +KFS  + PQ DGQ+ERT QT+E +LR        +W  H+ L++ +YNN   S
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYG-RPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNL-EFQVGDQVFLK
        +  M P+E ++   P  +P+   E+        E  Q T    + ++E+L     + K Y D + + + EFQ GD V +K
Subjt:  SIGMAPYEALYG-RPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNL-EFQVGDQVFLK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein8.6e-4035.61Show/hide
Query:  HPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTFT
        H G T     +   Y+W  ++  I +Y+  C+ CQ +K  R R  G L PL + E +W  I+MDF+ GLP TS+    I V+VDR +  A FI  + T  
Subjt:  HPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTFT

Query:  LDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSS
          QL  L    I S +G P +I S RD R T+  +  L K +G     S++ HPQ DGQSERTIQTL  +LRA V     +W  +LP +EF YN+    +
Subjt:  LDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSS

Query:  IGMAPYEALYGRPCRTPVCW--NEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFL
        +G +P+E   G    TP     +EV  +     EL +         +E L  AQ   ++  ++RR+ L   +GD V +
Subjt:  IGMAPYEALYGRPCRTPVCW--NEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFL

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.5e-3935.25Show/hide
Query:  HPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTFT
        H G T     +   Y+W  ++  I +Y+  C+ CQ +K  R R  G L PL + E +W  I+MDF+ GLP TS+    I V+VDR +  A FI  + T  
Subjt:  HPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTFT

Query:  LDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSS
          QL  L    I S +G P +I S RD R T+  +  L K +G     S++ HPQ DGQSERTIQTL  +LRA       +W  +LP +EF YN+    +
Subjt:  LDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSS

Query:  IGMAPYEALYGRPCRTPVCW--NEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFL
        +G +P+E   G    TP     +EV  +     EL +         +E L  AQ   ++  ++RR+ L   +GD V +
Subjt:  IGMAPYEALYGRPCRTPVCW--NEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFL

Q9UR07 Transposon Tf2-11 polyprotein4.2e-3932.14Show/hide
Query:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF
        +HPG   +   + + + W G++++I EYV  C  CQ  K    +P G L P+   E  WE ++MDF+  LP  SSG+  ++V+VDR +  A  +P   + 
Subjt:  MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTF

Query:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS
        T +Q AR++  ++++ +G P  I++  D  FTS+ W          +KFS  + PQ DGQ+ERT QT+E +LR        +W  H+ L++ +YNN   S
Subjt:  TLDQLARLYVDKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQS

Query:  SIGMAPYEALYG-RPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNL-EFQVGDQVFLK
        +  M P+E ++   P  +P+   E+        E  Q T    + ++E+L     + K Y D + + + EFQ GD V +K
Subjt:  SIGMAPYEALYG-RPCRTPVCWNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNL-EFQVGDQVFLK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCCAGGTAGCACCAAGATGTACAGAACTTTAAAGAAGACTTATTGGTGGTCTGGAATGAAGCAAGAGATAGCTGAATATGTTGATAGATGTTTAATTTGTCAACA
GGTTAAACCAGTAAGACAGAGGCCAGAAGGATTTCTTAATCCTTTGCTAATGCCAGAGTGGAAATGGGAGCATATTACTATGGATTTTCTATTTGGATTACCTCGTACAT
CCAGTGGACATTATGGTATATGGGTAATAGTAGACAGACTCACCAATACGGCACGATTTATACCAATTAAAATGACATTTACGTTAGACCAGCTAGCGAGATTATATGTT
GATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCATATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAAAAAGCAATGGGAACAGGACT
AAAGTTTAGTACATCATTTCATCCCCAGCCAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTACAACTTAAAGGAAGTTGGG
ATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGGCACCATATGAAGCCTTATACGGGAGACCATGCAGAACTCCTGTGTGC
TGGAATGAAGTGGGAGAGCAGAAGTTAGTAGGTCCTGAGTTGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAGAAAATCTAAGGATAGCCCAAGATCGACAGAA
AAGTTATGTGGATAAGCGACGAAGAAACCTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGCGAGGTGTTATTCGTTTCGGAAGAAAAGGTAAGT
TAAGTCCTAGATATATTGAGTCATATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATCCAGGTAGCACCAAGATGTACAGAACTTTAAAGAAGACTTATTGGTGGTCTGGAATGAAGCAAGAGATAGCTGAATATGTTGATAGATGTTTAATTTGTCAACA
GGTTAAACCAGTAAGACAGAGGCCAGAAGGATTTCTTAATCCTTTGCTAATGCCAGAGTGGAAATGGGAGCATATTACTATGGATTTTCTATTTGGATTACCTCGTACAT
CCAGTGGACATTATGGTATATGGGTAATAGTAGACAGACTCACCAATACGGCACGATTTATACCAATTAAAATGACATTTACGTTAGACCAGCTAGCGAGATTATATGTT
GATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCATATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAAAAAGCAATGGGAACAGGACT
AAAGTTTAGTACATCATTTCATCCCCAGCCAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTACAACTTAAAGGAAGTTGGG
ATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGGCACCATATGAAGCCTTATACGGGAGACCATGCAGAACTCCTGTGTGC
TGGAATGAAGTGGGAGAGCAGAAGTTAGTAGGTCCTGAGTTGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAGAAAATCTAAGGATAGCCCAAGATCGACAGAA
AAGTTATGTGGATAAGCGACGAAGAAACCTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGCGAGGTGTTATTCGTTTCGGAAGAAAAGGTAAGT
TAAGTCCTAGATATATTGAGTCATATTAG
Protein sequenceShow/hide protein sequence
MHPGSTKMYRTLKKTYWWSGMKQEIAEYVDRCLICQQVKPVRQRPEGFLNPLLMPEWKWEHITMDFLFGLPRTSSGHYGIWVIVDRLTNTARFIPIKMTFTLDQLARLYV
DKIVSQYGVPVSIVSYRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQPDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVC
WNEVGEQKLVGPELVQITTNNIKLIRENLRIAQDRQKSYVDKRRRNLEFQVGDQVFLKLSPWRGVIRFGRKGKLSPRYIESY