; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0099681 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0099681
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:15488753..15489832
RNA-Seq ExpressionCmc04g0099681
SyntenyCmc04g0099681
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-20199.15Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        T FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVDPQKVEAVVNWERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH
        GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWR+YLFGEKCH
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH

KAA0037582.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-20199.15Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        T FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVDPQKVEAVVNWERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH
        GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWR+YLFGEKCH
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH

KAA0041108.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-20199.15Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        T FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVDPQKVEAVVNWERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH
        GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWR+YLFGEKCH
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH

KAA0056684.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-20199.15Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        T FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVDPQKVEAVVNWERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH
        GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWR+YLFGEKCH
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH

TYK27507.1 reverse transcriptase [Cucumis melo var. makuwa]1.0e-20199.15Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        T FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVDPQKVEAVVNWERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH
        GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWR+YLFGEKCH
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase4.8e-20299.15Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        T FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVDPQKVEAVVNWERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH
        GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWR+YLFGEKCH
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH

A0A5A7U2V7 Reverse transcriptase4.8e-20299.15Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        T FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVDPQKVEAVVNWERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH
        GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWR+YLFGEKCH
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH

A0A5A7UNA3 Reverse transcriptase4.8e-20299.15Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        T FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVDPQKVEAVVNWERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH
        GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWR+YLFGEKCH
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH

A0A5A7UUL6 Reverse transcriptase4.8e-20299.15Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        T FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVDPQKVEAVVNWERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH
        GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWR+YLFGEKCH
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH

A0A5D3BHI1 Reverse transcriptase4.8e-20299.15Show/hide
Query:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
        MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK
Subjt:  MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAK

Query:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
        T FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG
Subjt:  TTFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKG

Query:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
        VSVDPQKVEAVVNWERP SATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
Subjt:  VSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH
        GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWR+YLFGEKCH
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCH

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.1e-7739.38Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKT
        +E++ Q+Q+++++G IR S SP+ +P+  V KK         R+ IDYR+LN++T+ +++P+P +D++  +L     F+ IDL  G+HQ+++    ++KT
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGT-----LRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKT

Query:  TFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGV
         F T++GHYE+  MPFGL NAPA F   MN I    L++  +V++DDI+V+S   + H + L +V + L +  L  +  KCEF  ++  FLGHV++  G+
Subjt:  TFRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGV

Query:  SVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSD-KCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
          +P+K+EA+  +  PT   E+++FLGL GYYR+FI +F+ +A P+T   +KN+K + ++ + + +F++LK  +   PIL +P   K + +  DAS + L
Subjt:  SVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSD-KCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCHF
        G VL QDG+ ++Y SR L EHE NY T + EL A+V A K +R+YL G   HF
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCHF

P20825 Retrovirus-related Pol polyprotein from transposon 2971.8e-7640.57Show/hide
Query:  ELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTT
        E++ Q+QE++++G IR S SP+ +P   V KK         R+ IDYR+LN++TI ++YP+P +D++  +L     F+ IDL  G+HQ+++ E  I+KT 
Subjt:  ELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTT

Query:  FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS
        F T+ GHYE+  MPFGL NAPA F   MN I    L++  +V++DDI+++S     H   +++V   L +  L  +  KCEF  ++  FLGH+V+  G+ 
Subjt:  FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS

Query:  VDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCE--QSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL
         +P KV+A+V++  PT   E+R+FLGL GYYR+FI +++ +A P+T+  +K  K + + K E  ++F++LK  ++  PIL LP   K +V+  DAS L L
Subjt:  VDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCE--QSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGL

Query:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEK
        G VL Q+G+ I++ SR L +HE NY   + EL A+V A K +R+YL G +
Subjt:  GCVLMQDGNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.0e-6839.44Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR
        +E+   +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK TI + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KT F T 
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR

Query:  YGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQ
         G YE+ VMPFGL NAP+ F   M   F     +FV V++DDIL++S   E H +HL  VL+ L+ + L  K  KC+F  E+  FLG+ +  + ++    
Subjt:  YGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQ

Query:  KVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGCVLM
        K  A+ ++  P +  + + FLG+  YYRRFI + S++A P+        K +W++K +++ ++LK  L  +P+L +P   K +Y +  DAS+ G+G VL 
Subjt:  KVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGCVLM

Query:  QDGN------VIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCHFS
        +  N      V+ Y S+ L+  + NYP  +LEL  ++ AL  +RY L G+  HF+
Subjt:  QDGN------VIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCHFS

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.8e-7140.72Show/hide
Query:  ELKMQLQELVDKGYIRPSVSPWGAPVLFVKKK-----DGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTT
        E++ Q+ EL+  G IRPS SP+ +P+  V KK     +   R+ +D+++LN VTI + YP+P I+     L  A  F+ +DL SG+HQ+ ++ESDI KT 
Subjt:  ELKMQLQELVDKGYIRPSVSPWGAPVLFVKKK-----DGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTT

Query:  FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS
        F T  G YEF  +PFGL NAPA+F  +++ I   ++ +   V+IDDI+V+S D ++H ++LR+VL +L +  L     K  F   QV FLG++V+A G+ 
Subjt:  FRTRYGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVS

Query:  VDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR---KNVKFEWSDKCE--------QSFQELKKRLVTAPILALPVTGKDYVI
         DP+KV A+     PTS  E++ FLG+  YYR+FI+D++++A PLT LTR    N+K   S K          QSF +LK  L ++ ILA P   K + +
Subjt:  VDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTR---KNVKFEWSDKCE--------QSFQELKKRLVTAPILALPVTGKDYVI

Query:  YCDASRLGLGCVLMQD----GNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFG
          DAS   +G VL QD       IAY SR L + E NY T + E+ A++ +L   R YL+G
Subjt:  YCDASRLGLGCVLMQD----GNVIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFG

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.8e-6839.44Show/hide
Query:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR
        +E+   +Q+L+D  +I PS SP  +PV+ V KKDGT RLC+DYR LNK TI + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KT F T 
Subjt:  KELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTR

Query:  YGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQ
         G YE+ VMPFGL NAP+ F   M   F     +FV V++DDIL++S   E H +HL  VL+ L+ + L  K  KC+F  E+  FLG+ +  + ++    
Subjt:  YGHYEFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQ

Query:  KVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGCVLM
        K  A+ ++  P +  + + FLG+  YYRRFI + S++A P+        K +W++K +++  +LK  L  +P+L +P   K +Y +  DAS+ G+G VL 
Subjt:  KVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGK-DYVIYCDASRLGLGCVLM

Query:  QDGN------VIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCHFS
        +  N      V+ Y S+ L+  + NYP  +LEL  ++ AL  +RY L G+  HF+
Subjt:  QDGN------VIAYASRQLKEHECNYPTHDLELAAVVLALKIWRYYLFGEKCHFS

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.5e-2745.16Show/hide
Query:  HLRIVLQTLREKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEW
        HL +VLQ   + Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V W  P + TE+R FLGL GYYRRF++++ ++  PLT L +KN   +W
Subjt:  HLRIVLQTLREKQLYAKFSKCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAVVNWERPTSATEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEW

Query:  SDKCEQSFQELKKRLVTAPILALP
        ++    +F+ LK  + T P+LALP
Subjt:  SDKCEQSFQELKKRLVTAPILALP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCGCCGTGGGGAGCACCAGTGCTTTTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAA
GGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTTAGAACGAGGTATGGGCATTAT
GAGTTTCGAGTTATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCGGTATTTAGATCAGTTTGTGATTGTGTTCATTGA
TGATATATTAGTTTACTCGGTTGACAGAGAATCTCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGAAAAACAGTTATACGCTAAGTTCAGCAAATGTGAGT
TCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCG
ACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTT
TGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTG
ATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTT
GAGCTAGCAGCAGTTGTTTTAGCACTAAAAATATGGAGATACTATTTGTTCGGGGAAAAGTGCCATTTTTCACAGATCATAAAAGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCAAGCGAGCTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAAGGGATACATCAGGCCTAGTGTTTCGCCGTGGGGAGCACCAGTGCTTTTTGTGAA
AAAGAAAGATGGTACCCTCAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCCTTTACCACGCATCGATGACTTATTTGATCAACTAA
GGGGAGCAGCGTTGTTCTCTAAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTGCTAAGACAACATTTAGAACGAGGTATGGGCATTAT
GAGTTTCGAGTTATGCCATTCGGTTTAACGAATGCGCCAGCGGTTTTCATGGATCTCATGAACAGGATCTTCCATCGGTATTTAGATCAGTTTGTGATTGTGTTCATTGA
TGATATATTAGTTTACTCGGTTGACAGAGAATCTCATGAGGAACATCTGAGGATTGTTCTACAGACTCTACGTGAAAAACAGTTATACGCTAAGTTCAGCAAATGTGAGT
TCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGAGTTAGTGTCGATCCACAAAAAGTAGAAGCGGTTGTCAATTGGGAAAGACCAACTAGTGCG
ACAGAAGTACGTAGTTTCCTGGGTTTGGCAGGATACTATAGGCGTTTTATTGAGGATTTCTCTCGATTGGCATTGCCTTTGACCGCTTTGACAAGGAAGAATGTTAAGTT
TGAGTGGTCAGATAAATGCGAGCAAAGTTTTCAGGAATTGAAGAAAAGACTAGTTACAGCACCTATTTTGGCACTTCCTGTAACAGGGAAGGACTATGTGATTTATTGTG
ATGCTTCAAGGCTAGGATTAGGTTGTGTGCTTATGCAAGATGGGAATGTAATAGCTTATGCTTCAAGGCAGTTGAAGGAGCATGAGTGTAATTACCCTACCCATGATCTT
GAGCTAGCAGCAGTTGTTTTAGCACTAAAAATATGGAGATACTATTTGTTCGGGGAAAAGTGCCATTTTTCACAGATCATAAAAGTCTGA
Protein sequenceShow/hide protein sequence
MAPSELKELKMQLQELVDKGYIRPSVSPWGAPVLFVKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGAALFSKIDLRSGYHQLKVRESDIAKTTFRTRYGHY
EFRVMPFGLTNAPAVFMDLMNRIFHRYLDQFVIVFIDDILVYSVDRESHEEHLRIVLQTLREKQLYAKFSKCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVNWERPTSA
TEVRSFLGLAGYYRRFIEDFSRLALPLTALTRKNVKFEWSDKCEQSFQELKKRLVTAPILALPVTGKDYVIYCDASRLGLGCVLMQDGNVIAYASRQLKEHECNYPTHDL
ELAAVVLALKIWRYYLFGEKCHFSQIIKV