; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0100011 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0100011
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
Genome locationCMiso1.1chr04:15868432..15869307
RNA-Seq ExpressionCmc04g0100011
SyntenyCmc04g0100011
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025363.1 Beta-galactosidase [Cucumis melo var. makuwa]8.6e-12783.46Show/hide
Query:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSG TDHLTG SEHF++Y P AGN KI IADGSL PIAGKGQIV FDGF+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS
        ESV+FQD++ GRTIGTARHSRGLYIL+DDTS SS+S  SLLSSYFSTSE D MLWHF LGH NFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSF S
Subjt:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS

Query:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        Q YKPTQPF LI+SDVWGP KVT SSGKRWFVTFIDDHTRLTWVYLI DK EV +IFQNFYHTI+TQFH K+
Subjt:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]8.6e-12783.46Show/hide
Query:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSG TDHLTG SEHF++Y P AGN KI IADGSL PIAGKGQIV FDGF+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS
        ESV+FQD++ GRTIGTARHSRGLYIL+DDTS SS+S  SLLSSYFSTSE D MLWHF LGH NFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSF S
Subjt:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS

Query:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        Q YKPTQPF LI+SDVWGP KVT SSGKRWFVTFIDDHTRLTWVYLI DK EV +IFQNFYHTI+TQFH K+
Subjt:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

KAA0066242.1 Beta-galactosidase [Cucumis melo var. makuwa]9.4e-13488.6Show/hide
Query:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M Q   LISVDGTN WILDS  TDHLTGFSEHFVTYTP AGN KI I DGSL PIAGKGQI+L+DGFSLQNVLHVPKLSYNLLSISKITRELH KATFLP
Subjt:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS
        ESV+FQ+LN GRTIGTARHSRGLYILNDDTSGSSISTTSLLSSY STSEHD+MLWHF LGH NFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSF S
Subjt:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS

Query:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        Q YKPTQPFTLI+SDVWGP KVT  SGKRWFVTFIDDHTRLTWVYLI DK EVSAIFQNFYHTIETQFHKK+
Subjt:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]8.6e-12783.46Show/hide
Query:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSG TDHLTG SEHF++Y P AGN KI IADGSL PIAGKGQIV FDGF+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS
        ESV+FQD++ GRTIGTARHSRGLYIL+DDTS SS+S  SLLSSYFSTSE D MLWHF LGH NFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSF S
Subjt:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS

Query:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        Q YKPTQPF LI+SDVWGP KVT SSGKRWFVTFIDDHTRLTWVYLI DK EV +IFQNFYHTI+TQFH K+
Subjt:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]8.6e-12783.46Show/hide
Query:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSG TDHLTG SEHF++Y P AGN KI IADGSL PIAGKGQIV FDGF+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS
        ESV+FQD++ GRTIGTARHSRGLYIL+DDTS SS+S  SLLSSYFSTSE D MLWHF LGH NFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSF S
Subjt:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS

Query:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        Q YKPTQPF LI+SDVWGP KVT SSGKRWFVTFIDDHTRLTWVYLI DK EV +IFQNFYHTI+TQFH K+
Subjt:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

TrEMBL top hitse value%identityAlignment
A0A5A7SM64 Beta-galactosidase4.1e-12783.46Show/hide
Query:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSG TDHLTG SEHF++Y P AGN KI IADGSL PIAGKGQIV FDGF+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS
        ESV+FQD++ GRTIGTARHSRGLYIL+DDTS SS+S  SLLSSYFSTSE D MLWHF LGH NFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSF S
Subjt:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS

Query:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        Q YKPTQPF LI+SDVWGP KVT SSGKRWFVTFIDDHTRLTWVYLI DK EV +IFQNFYHTI+TQFH K+
Subjt:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

A0A5A7VD20 Beta-galactosidase4.6e-13488.6Show/hide
Query:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M Q   LISVDGTN WILDS  TDHLTGFSEHFVTYTP AGN KI I DGSL PIAGKGQI+L+DGFSLQNVLHVPKLSYNLLSISKITRELH KATFLP
Subjt:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS
        ESV+FQ+LN GRTIGTARHSRGLYILNDDTSGSSISTTSLLSSY STSEHD+MLWHF LGH NFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSF S
Subjt:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS

Query:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        Q YKPTQPFTLI+SDVWGP KVT  SGKRWFVTFIDDHTRLTWVYLI DK EVSAIFQNFYHTIETQFHKK+
Subjt:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

A0A5A7VLQ7 Beta-galactosidase4.1e-12783.46Show/hide
Query:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSG TDHLTG SEHF++Y P AGN KI IADGSL PIAGKGQIV FDGF+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS
        ESV+FQD++ GRTIGTARHSRGLYIL+DDTS SS+S  SLLSSYFSTSE D MLWHF LGH NFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSF S
Subjt:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS

Query:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        Q YKPTQPF LI+SDVWGP KVT SSGKRWFVTFIDDHTRLTWVYLI DK EV +IFQNFYHTI+TQFH K+
Subjt:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

A0A5D3BJK7 Beta-galactosidase4.1e-12783.46Show/hide
Query:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSG TDHLTG SEHF++Y P AGN KI IADGSL PIAGKGQIV FDGF+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS
        ESV+FQD++ GRTIGTARHSRGLYIL+DDTS SS+S  SLLSSYFSTSE D MLWHF LGH NFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSF S
Subjt:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS

Query:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        Q YKPTQPF LI+SDVWGP KVT SSGKRWFVTFIDDHTRLTWVYLI DK EV +IFQNFYHTI+TQFH K+
Subjt:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

A0A5D3C4T4 Beta-galactosidase4.1e-12783.46Show/hide
Query:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP
        M QS GLISVDG NPWILDSG TDHLTG SEHF++Y P AGN KI IADGSL PIAGKGQIV FDGF+LQNVLHVPKLSYNLLSISKITRELHCKA FLP
Subjt:  MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLP

Query:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS
        ESV+FQD++ GRTIGTARHSRGLYIL+DDTS SS+S  SLLSSYFSTSE D MLWHF LGH NFTYM++LFPHLF K+DVSSLSCDVCIRAKQHRVSF S
Subjt:  ESVFFQDLNLGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSS

Query:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        Q YKPTQPF LI+SDVWGP KVT SSGKRWFVTFIDDHTRLTWVYLI DK EV +IFQNFYHTI+TQFH K+
Subjt:  QLYKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.6e-2029.1Show/hide
Query:  WILDSGPTDHLTGFSEHFVTYTPYAGNV-KIWIADGSLDPIAGKGQIVLFDGFS----LQNVLHVPKLSYNLLSISKITRELHCKATFLPESVFFQD---
        W++D+  + H T   + F  Y   AG+   + + + S   IAG G I +         L++V HVP L  NL+S   + R+ +       ES F      
Subjt:  WILDSGPTDHLTGFSEHFVTYTPYAGNV-KIWIADGSLDPIAGKGQIVLFDGFS----LQNVLHVPKLSYNLLSISKITRELHCKATFLPESVFFQD---

Query:  LNLGRTIGTARHSRG-LYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKI--DVSSLSCDVCIRAKQHRVSFSSQLYK
        L  G  +     +RG LY  N +     ++         +  E    LWH  +GH +   ++ L     +      +   CD C+  KQHRVSF +   +
Subjt:  LNLGRTIGTARHSRG-LYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKI--DVSSLSCDVCIRAKQHRVSFSSQLYK

Query:  PTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
              L+YSDV GP ++    G ++FVTFIDD +R  WVY++  K +V  +FQ F+  +E +  +KL
Subjt:  PTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

Q12491 Transposon Ty2-B Gag-Pol polyprotein1.4e-1024.91Show/hide
Query:  ILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQN-------VLHVPKLSYNLLSISKITRELHCKATFLPESVFFQDLN
        ++DSG +  L   S H++ +      + I  A     PI   G +     F+ QN        LH P ++Y+LLS+S++  + +  A F   ++   D  
Subjt:  ILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQN-------VLHVPKLSYNLLSISKITRELHCKATFLPESVFFQDLN

Query:  LGRTIGTARHSRGLYILNDDTSGSSIS--TTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMK---------YLFPHLFLKIDVSSLSCDVCI--RAKQHRV
        +   I   +H    ++       S IS  T + ++   S +++ + L H  LGH+NF  ++         YL        + S+  C  C+  ++ +HR 
Subjt:  LGRTIGTARHSRGLYILNDDTSGSSIS--TTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMK---------YLFPHLFLKIDVSSLSCDVCI--RAKQHRV

Query:  SFSSQL--YKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSA--IFQNFYHTIETQFHKKLL
           S+L   +  +PF  +++D++GP      S   +F++F D+ TR  WVY + D+ E S   +F +    I+ QF+ ++L
Subjt:  SFSSQL--YKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSA--IFQNFYHTIETQFHKKLL

Q12501 Transposon Ty2-OR2 Gag-Pol polyprotein3.6e-1125.27Show/hide
Query:  ILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQN-------VLHVPKLSYNLLSISKITRELHCKATFLPESVFFQDLN
        ++DSG +  L   S H++ +      + I  A     PI   G +     F+ QN        LH P ++Y+LLS+S++T + +  A F   ++   D  
Subjt:  ILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQN-------VLHVPKLSYNLLSISKITRELHCKATFLPESVFFQDLN

Query:  LGRTIGTARHSRGLYILNDDTSGSSIS--TTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMK---------YLFPHLFLKIDVSSLSCDVCI--RAKQHRV
        +   I   +H    ++       S IS  T + ++   S +++ + L H  LGH+NF  ++         YL        + S+  C  C+  ++ +HR 
Subjt:  LGRTIGTARHSRGLYILNDDTSGSSIS--TTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMK---------YLFPHLFLKIDVSSLSCDVCI--RAKQHRV

Query:  SFSSQL--YKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSA--IFQNFYHTIETQFHKKLL
           S+L   +  +PF  +++D++GP      S   +F++F D+ TR  WVY + D+ E S   +F +    I+ QF+ ++L
Subjt:  SFSSQL--YKPTQPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSA--IFQNFYHTIETQFHKKLL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.7e-2730.45Show/hide
Query:  TNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFD---GFSLQNVLHVPKLSYNLLSISKITRELHCKATFLPESVFFQDLN
        +N W+LDSG T H+T    +   + PY G   + +ADGS  PI+  G   L       +L N+L+VP +  NL+S+ ++         F P S   +DLN
Subjt:  TNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFD---GFSLQNVLHVPKLSYNLLSISKITRELHCKATFLPESVFFQDLN

Query:  LGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFSSQLYKPT
         G  +   +    LY    +   +S    SL +S  S + H    WH  LGH   + +  +  +  L +   S   LSC  C+  K ++V FS      T
Subjt:  LGRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFSSQLYKPT

Query:  QPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        +P   IYSDVW    +      R++V F+D  TR TW+Y +  K +V   F  F + +E +F  ++
Subjt:  QPFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.3e-2630.94Show/hide
Query:  NPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVL---FDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLPESVFFQDLNL
        N W+LDSG T H+T    +   + PY G   + IADGS  PI   G   L        L  VL+VP +  NL+S+ ++         F P S   +DLN 
Subjt:  NPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVL---FDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLPESVFFQDLNL

Query:  GRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFSSQLYKPTQ
        G  +   +    LY    +   +S    S+ +S  S + H    WH  LGH +   +  +  +  L +   S   LSC  C   K H+V FS+     ++
Subjt:  GRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSS---LSCDVCIRAKQHRVSFSSQLYKPTQ

Query:  PFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL
        P   IYSDVW    ++I +  R++V F+D  TR TW+Y +  K +V   F  F   +E +F  ++
Subjt:  PFTLIYSDVWGPFKVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCAGTCCTTTGGCCTTATTAGTGTTGATGGGACGAATCCCTGGATTTTGGACTCGGGGCCCACAGATCACTTGACAGGTTTCTCGGAGCATTTTGTCACTTATAC
CCCCTATGCTGGTAATGTGAAAATCTGGATAGCCGATGGCTCTTTAGATCCGATTGCTGGAAAAGGACAAATAGTCCTCTTTGACGGTTTCTCCCTCCAGAATGTTTTGC
ATGTGCCTAAGCTTTCTTACAATCTGTTATCTATCAGTAAGATCACTCGTGAGCTGCACTGTAAAGCTACTTTCTTACCTGAGTCTGTTTTCTTTCAGGACTTGAATTTA
GGGAGGACGATTGGCACTGCCCGGCATAGCAGGGGACTTTACATCCTTAATGATGATACCTCCGGTAGTAGTATCTCTACGACTAGTTTACTGTCTTCCTATTTTAGCAC
CTCTGAACATGACTTTATGTTGTGGCATTTTTGGTTAGGTCACTCGAACTTTACGTATATGAAATATTTGTTTCCTCATCTCTTTCTTAAAATAGATGTCTCCTCATTAT
CTTGTGATGTGTGCATTCGGGCAAAACAACATCGTGTTTCTTTTTCCTCACAACTATATAAACCCACACAACCGTTTACCCTTATCTATAGTGACGTTTGGGGTCCCTTC
AAGGTCACTATCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTACCTTATCATCGATAAATTTGAGGTTTCTGCTATTTT
CCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAATTGCTATTCTTTGGAGTGACAACGGTTGGGAATTCCAAAACCATAACCTTAGTGAATTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTCAGTCCTTTGGCCTTATTAGTGTTGATGGGACGAATCCCTGGATTTTGGACTCGGGGCCCACAGATCACTTGACAGGTTTCTCGGAGCATTTTGTCACTTATAC
CCCCTATGCTGGTAATGTGAAAATCTGGATAGCCGATGGCTCTTTAGATCCGATTGCTGGAAAAGGACAAATAGTCCTCTTTGACGGTTTCTCCCTCCAGAATGTTTTGC
ATGTGCCTAAGCTTTCTTACAATCTGTTATCTATCAGTAAGATCACTCGTGAGCTGCACTGTAAAGCTACTTTCTTACCTGAGTCTGTTTTCTTTCAGGACTTGAATTTA
GGGAGGACGATTGGCACTGCCCGGCATAGCAGGGGACTTTACATCCTTAATGATGATACCTCCGGTAGTAGTATCTCTACGACTAGTTTACTGTCTTCCTATTTTAGCAC
CTCTGAACATGACTTTATGTTGTGGCATTTTTGGTTAGGTCACTCGAACTTTACGTATATGAAATATTTGTTTCCTCATCTCTTTCTTAAAATAGATGTCTCCTCATTAT
CTTGTGATGTGTGCATTCGGGCAAAACAACATCGTGTTTCTTTTTCCTCACAACTATATAAACCCACACAACCGTTTACCCTTATCTATAGTGACGTTTGGGGTCCCTTC
AAGGTCACTATCTCATCTGGGAAAAGGTGGTTTGTAACCTTCATTGATGATCATACCCGTCTTACCTGGGTCTACCTTATCATCGATAAATTTGAGGTTTCTGCTATTTT
CCAAAACTTCTATCACACCATTGAAACACAATTCCATAAAAAATTGCTATTCTTTGGAGTGACAACGGTTGGGAATTCCAAAACCATAACCTTAGTGAATTTCTAG
Protein sequenceShow/hide protein sequence
MSQSFGLISVDGTNPWILDSGPTDHLTGFSEHFVTYTPYAGNVKIWIADGSLDPIAGKGQIVLFDGFSLQNVLHVPKLSYNLLSISKITRELHCKATFLPESVFFQDLNL
GRTIGTARHSRGLYILNDDTSGSSISTTSLLSSYFSTSEHDFMLWHFWLGHSNFTYMKYLFPHLFLKIDVSSLSCDVCIRAKQHRVSFSSQLYKPTQPFTLIYSDVWGPF
KVTISSGKRWFVTFIDDHTRLTWVYLIIDKFEVSAIFQNFYHTIETQFHKKLLFFGVTTVGNSKTITLVNF