CuGenDBv2

Gene ID	Cmc04g0100571
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr04:16582088..16582459
RNA-Seq Expression	Cmc04g0100571
Synteny	Cmc04g0100571
Gene Ontology terms	GO:0006952 - defense response (biological process) GO:0007165 - signal transduction (biological process) GO:0009231 - riboflavin biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003935 - GTP cyclohydrolase II activity (molecular function) GO:0005525 - GTP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity (molecular function) GO:0043531 - ADP binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0031640.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.0e-61

95.12

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Query:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        MDHWKAAKKVLRYL+GTKDYMLTYKRSDHLEVIGYSDSDF GCVDT+KSTFGYLFLLAEGAISWKSAKQSIIAASTME EFVACFEATVHGLWLRNFISG
Subjt:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAVFF
        LGI+DSI KPLRIYCDNSAAVFF
Subjt:  LGIVDSIAKPLRIYCDNSAAVFF

KAA0039623.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.8e-60

94.31

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Query:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        MDHWKAAKKVLRYL+GTKDYMLTYKRSDHLEVIGY DSDFAGCVD +KSTFGYLFLLAEGAISWKSAKQSII  STMEAEFVACFEATVHGLWLRNFISG
Subjt:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAVFF
        LGIV+SIAKPLRIYCDNSAAVFF
Subjt:  LGIVDSIAKPLRIYCDNSAAVFF

KAA0051161.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.1e-62

98.37

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Query:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDT+KSTFGYLFLLAEGAISWKSAKQSIIAAS MEAEFVACFEATVHGLWLRNFISG
Subjt:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAVFF
        LGIVDSIAKPLRIYCDNSAAVFF
Subjt:  LGIVDSIAKPLRIYCDNSAAVFF

KAA0061857.1 copia-like pol polyprotein [Cucumis melo var. makuwa]

1.7e-60

95.12

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Query:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        MDHWK AKKVLRYL+GTKDYMLTYKRSDHLEVIGYSDSDF GCVDT+KSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
Subjt:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAVFF
        LGIVD  AKPLRIYCDNSAAVFF
Subjt:  LGIVDSIAKPLRIYCDNSAAVFF

TYK04469.1 copia-like pol polyprotein [Cucumis melo var. makuwa]

2.0e-61

95.12

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Query:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        MDHWKAAKKVLRYL+GTKDYMLTYKRSDHLEVIGYSDSDF GCVDT+KSTFGYLFLLAEGAISWKSAKQSIIAASTME EFVACFEATVHGLWLRNFISG
Subjt:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAVFF
        LGI+DSI KPLRIYCDNSAAVFF
Subjt:  LGIVDSIAKPLRIYCDNSAAVFF

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SLM2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.8e-62

95.12

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Query:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        MDHWKAAKKVLRYL+GTKDYMLTYKRSDHLEVIGYSDSDF GCVDT+KSTFGYLFLLAEGAISWKSAKQSIIAASTME EFVACFEATVHGLWLRNFISG
Subjt:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAVFF
        LGI+DSI KPLRIYCDNSAAVFF
Subjt:  LGIVDSIAKPLRIYCDNSAAVFF

A0A5A7UCB2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.2e-63

98.37

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Query:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDT+KSTFGYLFLLAEGAISWKSAKQSIIAAS MEAEFVACFEATVHGLWLRNFISG
Subjt:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAVFF
        LGIVDSIAKPLRIYCDNSAAVFF
Subjt:  LGIVDSIAKPLRIYCDNSAAVFF

A0A5A7V4M3 Copia-like pol polyprotein

8.3e-61

95.12

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Query:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        MDHWK AKKVLRYL+GTKDYMLTYKRSDHLEVIGYSDSDF GCVDT+KSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
Subjt:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAVFF
        LGIVD  AKPLRIYCDNSAAVFF
Subjt:  LGIVDSIAKPLRIYCDNSAAVFF

A0A5D3BPH8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-60

94.31

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Query:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        MDHWKAAKKVLRYL+GTKDYMLTYKRSDHLEVIGY DSDFAGCVD +KSTFGYLFLLAEGAISWKSAKQSII  STMEAEFVACFEATVHGLWLRNFISG
Subjt:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAVFF
        LGIV+SIAKPLRIYCDNSAAVFF
Subjt:  LGIVDSIAKPLRIYCDNSAAVFF

A0A5D3C256 Copia-like pol polyprotein

9.8e-62

95.12

Show/hide

Query:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        MDHWKAAKKVLRYL+GTKDYMLTYKRSDHLEVIGYSDSDF GCVDT+KSTFGYLFLLAEGAISWKSAKQSIIAASTME EFVACFEATVHGLWLRNFISG
Subjt:  MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAVFF
        LGI+DSI KPLRIYCDNSAAVFF
Subjt:  LGIVDSIAKPLRIYCDNSAAVFF

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

9.9e-19

41.32

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Query:  WKAAKKVLRYLEGTKDYMLTYKRSDHLE--VIGYSDSDFAGCVDTKKSTFGYLFLLAE-GAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG
        W+  K+VLRYL+GT D  L +K++   E  +IGY DSD+AG    +KST GYLF + +   I W + +Q+ +AAS+ EAE++A FEA    LWL+  ++ 
Subjt:  WKAAKKVLRYLEGTKDYMLTYKRSDHLE--VIGYSDSDFAGCVDTKKSTFGYLFLLAE-GAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISG

Query:  LGIVDSIAKPLRIYCDNSAAV
        + I   +  P++IY DN   +
Subjt:  LGIVDSIAKPLRIYCDNSAAV

P0CV72 Secreted RxLR effector protein 161

1.2e-19

47.83

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Query:  HWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWL
        HW+A K+VLRYL+ T+ Y L + R+   +++GYSD+D+AG V++++ST GYLF L  G +SW+S KQ  +A S+ E E++A  EAT   +WL
Subjt:  HWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.6e-21

42.5

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Query:  DHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGL
        +HW+A K +LRYL GT    L +  SD + + GY+D+D AG +D +KS+ GYLF  + GAISW+S  Q  +A ST EAE++A  E     +WL+ F+  L
Subjt:  DHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGL

Query:  GIVDSIAKPLRIYCDNSAAV
        G+     K   +YCD+ +A+
Subjt:  GIVDSIAKPLRIYCDNSAAV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.7e-15

36.36

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Query:  DHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGL
        +H +A K++LRYL GT ++ +  K+ + L +  YSD+D+AG  D   ST GY+  L    ISW S KQ  +  S+ EAE+ +    +    W+ + ++ L
Subjt:  DHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGL

Query:  GIVDSIAKPLRIYCDNSAAVF
        GI   + +P  IYCDN  A +
Subjt:  GIVDSIAKPLRIYCDNSAAVF

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

4.9e-18

39.67

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Query:  DHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGL
        DHW A K+VLRYL GT D+ +  K+ + L +  YSD+D+AG  D   ST GY+  L    ISW S KQ  +  S+ EAE+ +    +    W+ + ++ L
Subjt:  DHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGL

Query:  GIVDSIAKPLRIYCDNSAAVF
        GI   ++ P  IYCDN  A +
Subjt:  GIVDSIAKPLRIYCDNSAAVF

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

5.9e-19

37.82

Show/hide

Query:  HWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGLG
        H +A  K+L Y++GT    L Y     +++  +SD+ F  C DT++ST GY   L    ISWKS KQ +++ S+ EAE+ A   AT   +WL  F   L 
Subjt:  HWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGLG

Query:  IVDSIAKPLRIYCDNSAAV
        +   ++KP  ++CDN+AA+
Subjt:  IVDSIAKPLRIYCDNSAAV

ATMG00240.1 Gag-Pol-related retrotransposon family protein

1.1e-04

37.74

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Query:  KAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLL
        +A  KVL Y++GT    L Y  +  L++  ++DSD+A C DT++S  G+  L+
Subjt:  KAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLL

ATMG00810.1 DNA/RNA polymerases superfamily protein

1.9e-09

38.16

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Query:  KKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVA
        K+VLRY++GT  + L   ++  L V  + DSD+AGC  T++ST G+   L    ISW + +Q  ++ S+ E E+ A
Subjt:  KKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVA

Sequences

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CDS sequence

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ATGGATCATTGGAAAGCTGCAAAGAAAGTTTTAAGGTATCTGGAAGGAACAAAAGATTATATGCTTACTTACAAGAGATCTGATCATCTTGAGGTGATTGGATATTCAGA
TTCAGATTTTGCCGGATGTGTGGATACAAAAAAATCCACTTTTGGCTATTTGTTCCTTCTAGCTGAAGGAGCAATTTCATGGAAAAGTGCAAAGCAGTCTATTATTGCTG
CATCCACTATGGAAGCTGAATTTGTAGCATGCTTTGAGGCTACAGTTCATGGTTTATGGCTGCGGAACTTTATCTCAGGACTTGGAATTGTCGACAGTATTGCCAAGCCG
CTGAGAATTTATTGTGATAATTCTGCAGCAGTTTTCTTCTAA

mRNA sequence

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Protein sequence

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MDHWKAAKKVLRYLEGTKDYMLTYKRSDHLEVIGYSDSDFAGCVDTKKSTFGYLFLLAEGAISWKSAKQSIIAASTMEAEFVACFEATVHGLWLRNFISGLGIVDSIAKP
LRIYCDNSAAVFF

Cmc04g0100571 (gene) of Melon (Charmono) v1.1 genome