CuGenDBv2

Gene ID	Cmc04g0101091
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr04:17284609..17285550
RNA-Seq Expression	Cmc04g0101091
Synteny	Cmc04g0101091
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0055085 - transmembrane transport (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016787 - hydrolase activity (molecular function) GO:0140359 - ABC-type transmembrane transporter activity (molecular function)
InterPro domains	IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025181.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.9e-165

95.24

Show/hide

Query:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
        M VLNLIREFELQKMKETESIKEYSV+LLDIANQIRLLGS FKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
Subjt:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE

Query:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE
        GALPAKHHENVRN KKKKFFKKNQISTRESS YNKAGVKKGSYPP SHCNKQGHPPFKCWRRP+AKCTKCNQMGHEAVICRNNNQQQGVEAKIA  +++E
Subjt:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE

Query:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
        EDQLFVATCF+GGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
Subjt:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV

Query:  TFENEYCLIKDTTNQ
        TFENEYCLIKD  NQ
Subjt:  TFENEYCLIKDTTNQ

KAA0035947.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.9e-165

95.24

Show/hide

Query:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
        M VLNLIREFELQKMKETESIKEYSV+LLDIANQIRLLGS FKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
Subjt:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE

Query:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE
        GALPAKHHENVRN KKKKFFKKNQISTRESS YNKAGVKKGSYPP SHCNKQGHPPFKCWRRP+AKCTKCNQMGHEAVICRNNNQQQGVEAKIA  +++E
Subjt:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE

Query:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
        EDQLFVATCF+GGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
Subjt:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV

Query:  TFENEYCLIKDTTNQ
        TFENEYCLIKD  NQ
Subjt:  TFENEYCLIKDTTNQ

KAA0064094.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.9e-165

95.24

Show/hide

Query:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
        M VLNLIREFELQKMKETESIKEYSV+LLDIANQIRLLGS FKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
Subjt:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE

Query:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE
        GALPAKHHENVRN KKKKFFKKNQISTRESS YNKAGVKKGSYPP SHCNKQGHPPFKCWRRP+AKCTKCNQMGHEAVICRNNNQQQGVEAKIA  +++E
Subjt:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE

Query:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
        EDQLFVATCF+GGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
Subjt:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV

Query:  TFENEYCLIKDTTNQ
        TFENEYCLIKD  NQ
Subjt:  TFENEYCLIKDTTNQ

TYJ95793.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.9e-165

95.24

Show/hide

Query:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
        M VLNLIREFELQKMKETESIKEYSV+LLDIANQIRLLGS FKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
Subjt:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE

Query:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE
        GALPAKHHENVRN KKKKFFKKNQISTRESS YNKAGVKKGSYPP SHCNKQGHPPFKCWRRP+AKCTKCNQMGHEAVICRNNNQQQGVEAKIA  +++E
Subjt:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE

Query:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
        EDQLFVATCF+GGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
Subjt:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV

Query:  TFENEYCLIKDTTNQ
        TFENEYCLIKD  NQ
Subjt:  TFENEYCLIKDTTNQ

TYK21117.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.9e-165

95.24

Show/hide

Query:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
        M VLNLIREFELQKMKETESIKEYSV+LLDIANQIRLLGS FKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
Subjt:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE

Query:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE
        GALPAKHHENVRN KKKKFFKKNQISTRESS YNKAGVKKGSYPP SHCNKQGHPPFKCWRRP+AKCTKCNQMGHEAVICRNNNQQQGVEAKIA  +++E
Subjt:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE

Query:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
        EDQLFVATCF+GGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
Subjt:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV

Query:  TFENEYCLIKDTTNQ
        TFENEYCLIKD  NQ
Subjt:  TFENEYCLIKDTTNQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T2Z4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-165

95.24

Show/hide

Query:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
        M VLNLIREFELQKMKETESIKEYSV+LLDIANQIRLLGS FKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
Subjt:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE

Query:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE
        GALPAKHHENVRN KKKKFFKKNQISTRESS YNKAGVKKGSYPP SHCNKQGHPPFKCWRRP+AKCTKCNQMGHEAVICRNNNQQQGVEAKIA  +++E
Subjt:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE

Query:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
        EDQLFVATCF+GGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
Subjt:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV

Query:  TFENEYCLIKDTTNQ
        TFENEYCLIKD  NQ
Subjt:  TFENEYCLIKDTTNQ

A0A5D3BL45 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-165

95.24

Show/hide

Query:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
        M VLNLIREFELQKMKETESIKEYSV+LLDIANQIRLLGS FKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
Subjt:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE

Query:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE
        GALPAKHHENVRN KKKKFFKKNQISTRESS YNKAGVKKGSYPP SHCNKQGHPPFKCWRRP+AKCTKCNQMGHEAVICRNNNQQQGVEAKIA  +++E
Subjt:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE

Query:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
        EDQLFVATCF+GGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
Subjt:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV

Query:  TFENEYCLIKDTTNQ
        TFENEYCLIKD  NQ
Subjt:  TFENEYCLIKDTTNQ

A0A5D3DBU0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-165

95.24

Show/hide

Query:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
        M VLNLIREFELQKMKETESIKEYSV+LLDIANQIRLLGS FKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
Subjt:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE

Query:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE
        GALPAKHHENVRN KKKKFFKKNQISTRESS YNKAGVKKGSYPP SHCNKQGHPPFKCWRRP+AKCTKCNQMGHEAVICRNNNQQQGVEAKIA  +++E
Subjt:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE

Query:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
        EDQLFVATCF+GGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
Subjt:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV

Query:  TFENEYCLIKDTTNQ
        TFENEYCLIKD  NQ
Subjt:  TFENEYCLIKDTTNQ

A0A5D3DMJ1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-165

95.24

Show/hide

Query:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
        M VLNLIREFELQKMKETESIKEYSV+LLDIANQIRLLGS FKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
Subjt:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE

Query:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE
        GALPAKHHENVRN KKKKFFKKNQISTRESS YNKAGVKKGSYPP SHCNKQGHPPFKCWRRP+AKCTKCNQMGHEAVICRNNNQQQGVEAKIA  +++E
Subjt:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE

Query:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
        EDQLFVATCF+GGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
Subjt:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV

Query:  TFENEYCLIKDTTNQ
        TFENEYCLIKD  NQ
Subjt:  TFENEYCLIKDTTNQ

A0A5D3E2V7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-165

95.24

Show/hide

Query:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
        M VLNLIREFELQKMKETESIKEYSV+LLDIANQIRLLGS FKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE
Subjt:  MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVE

Query:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE
        GALPAKHHENVRN KKKKFFKKNQISTRESS YNKAGVKKGSYPP SHCNKQGHPPFKCWRRP+AKCTKCNQMGHEAVICRNNNQQQGVEAKIA  +++E
Subjt:  GALPAKHHENVRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIA--DQKE

Query:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
        EDQLFVATCF+GGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV
Subjt:  EDQLFVATCFMGGESNESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKV

Query:  TFENEYCLIKDTTNQ
        TFENEYCLIKD  NQ
Subjt:  TFENEYCLIKDTTNQ

SwissProt top hits

e value

%identity

Alignment

P25601 Putative transposon Ty5-1 protein YCL075W

8.9e-08

37.33

Show/hide

Query:  NESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSV
        +  W+ D+GCT+HM HD+ +F     ++      G G  I + G GT+ I    GT  + DV +VPD+  NL+SV
Subjt:  NESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

4.3e-10

24.84

Show/hide

Query:  QKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAV--EGALPAKHHEN
        Q  K T++I +Y   L+   +Q+ LLG        VE++L ++PE+++  I  +   KD T  TL EI   L   E +        V    A    H   
Subjt:  QKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAV--EGALPAKHHEN

Query:  VRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIADQKEEDQLFV----AT
                  + N+   R ++  +K         P+   +   HP     +    KC  C   GH A  C   +Q Q   + +  Q+           A 
Subjt:  VRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIADQKEEDQLFV----AT

Query:  CFMGGE-SNESWLIDSGCTNHMTHDKELFKDLKP-TNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIE-KGFKVTFENE
          +G   S+ +WL+DSG T+H+T D       +P T    V + +G  I +   G+ ++++     ++ ++L+VP+I++NL+SV +L    G  V F   
Subjt:  CFMGGE-SNESWLIDSGCTNHMTHDKELFKDLKP-TNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIE-KGFKVTFENE

Query:  YCLIKD
           +KD
Subjt:  YCLIKD

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

4.0e-08

25.09

Show/hide

Query:  NQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQR-RAMRQEGAVEGALPAKHHENVRNKKKKKFFKKNQISTRESS
        +Q+ LLG        VE++L ++P+ ++  I  +   KD T  +L EI   L  +E +  A+     V        H N           +NQ +  ++ 
Subjt:  NQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQR-RAMRQEGAVEGALPAKHHENVRNKKKKKFFKKNQISTRESS

Query:  AYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIADQKEEDQLFV-----ATCFMGGESN-ESWLIDSGCTN
         YN    +  S+ P S  ++  +   K +     +C  C+  GH A  C   +Q Q       +Q++    F      A   +    N  +WL+DSG T+
Subjt:  AYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIADQKEEDQLFV-----ATCFMGGESN-ESWLIDSGCTN

Query:  HMTHDKELFKDLKP-TNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQL
        H+T D       +P T    V I +G  I +   G+ ++ +   +  +  VL+VP+I++NL+SV +L
Subjt:  HMTHDKELFKDLKP-TNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQL

Arabidopsis top hits

e value

%identity

Alignment

AT3G20980.1 Gag-Pol-related retrotransposon family protein

8.9e-11

37.39

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Query:  VATCFMGGESNES-WLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGD-----YISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFK
        VA CF     +E+ WLI S  +NHMT   + F  L  +   KV+  +GD        V+G G +   + +G K I++VL+VP I  N LSV QL   GF+
Subjt:  VATCFMGGESNES-WLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGD-----YISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFK

Query:  VTFENEY-CLIKDTT
        V+ E    C + D T
Subjt:  VTFENEY-CLIKDTT

AT3G21000.1 Gag-Pol-related retrotransposon family protein

4.6e-07

27.13

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Query:  RNNNQQQGVEAKIADQKEEDQLFVATCF-------MGGES--NESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKH
        +NN+ Q+  + +I   KEE +  +   +       +G ++  ++ W+I      +MT   + F  L  T    V   +G  + V+GKG + I   +G K 
Subjt:  RNNNQQQGVEAKIADQKEEDQLFVATCF-------MGGES--NESWLIDSGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKH

Query:  -IQDVLFVPDINQNLLSVGQLIEKGFKVT
         I++V+FVP +N+N+LS G+++ K + ++
Subjt:  -IQDVLFVPDINQNLLSVGQLIEKGFKVT

Sequences

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CDS sequence

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ATGTGTGTGCTAAACTTGATTCGAGAATTCGAGTTGCAGAAGATGAAGGAAACAGAATCAATTAAAGAGTATTCTGTTAAGTTATTGGACATTGCAAACCAAATCAGATT
ACTTGGTTCTGAGTTCAAGGACTCAAGAATTGTAGAAAAAATTCTTGTATCAGTGCCTGAAAAATTTGAGGCATCTATTTCTGCATTAGAAAATACCAAAGATTTGACTC
AAATCACTCTTGCAGAGATACTCAATGCTTTGCAAGCGCAGGAACAAAGAAGAGCCATGAGGCAAGAAGGTGCTGTTGAAGGAGCCTTGCCAGCAAAGCATCATGAGAAC
GTTAGGAACAAGAAGAAGAAGAAGTTTTTCAAGAAGAATCAAATTTCTACTAGAGAATCTTCAGCTTACAACAAAGCAGGAGTCAAGAAGGGATCCTATCCTCCCTATTC
ACATTGCAATAAACAGGGTCATCCTCCTTTTAAATGCTGGAGGAGACCAGACGCCAAGTGCACCAAATGTAACCAAATGGGGCATGAAGCTGTAATTTGCAGGAACAATA
ATCAACAACAAGGTGTAGAGGCCAAAATTGCTGATCAAAAGGAGGAGGATCAATTGTTTGTGGCAACATGCTTCATGGGTGGTGAGTCAAATGAAAGCTGGTTGATTGAC
AGTGGATGTACCAACCATATGACTCATGACAAGGAGTTGTTTAAAGATCTGAAGCCAACAAATATCACCAAAGTCAGAATTGGCAATGGGGACTACATCTCAGTCAAAGG
AAAGGGGACTATTGCGATTGCAAGTTGTAAAGGTACAAAACATATACAGGATGTTCTTTTTGTACCTGACATTAACCAAAATCTGTTGAGTGTGGGTCAACTTATTGAAA
AAGGTTTTAAAGTTACTTTTGAAAATGAATATTGCTTGATTAAGGATACAACAAATCAATAG

mRNA sequence

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Protein sequence

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MCVLNLIREFELQKMKETESIKEYSVKLLDIANQIRLLGSEFKDSRIVEKILVSVPEKFEASISALENTKDLTQITLAEILNALQAQEQRRAMRQEGAVEGALPAKHHEN
VRNKKKKKFFKKNQISTRESSAYNKAGVKKGSYPPYSHCNKQGHPPFKCWRRPDAKCTKCNQMGHEAVICRNNNQQQGVEAKIADQKEEDQLFVATCFMGGESNESWLID
SGCTNHMTHDKELFKDLKPTNITKVRIGNGDYISVKGKGTIAIASCKGTKHIQDVLFVPDINQNLLSVGQLIEKGFKVTFENEYCLIKDTTNQ

Cmc04g0101091 (gene) of Melon (Charmono) v1.1 genome