CuGenDBv2

Gene ID	Cmc04g0101111
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr04:17358610..17359188
RNA-Seq Expression	Cmc04g0101111
Synteny	Cmc04g0101111
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

7.2e-106

98.92

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC
        FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRPCRTPVC
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

7.2e-106

98.92

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Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC
        FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRPCRTPVC
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

KAA0059912.1 reverse transcriptase [Cucumis melo var. makuwa]

7.2e-106

98.92

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC
        FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRPCRTPVC
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

KAA0061889.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

7.2e-106

98.92

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC
        FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRPCRTPVC
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

TYK05214.1 reverse transcriptase [Cucumis melo var. makuwa]

7.2e-106

98.92

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC
        FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRPCRTPVC
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

3.5e-106

98.92

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC
        FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRPCRTPVC
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

A0A5A7U2V7 Reverse transcriptase

3.5e-106

98.92

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC
        FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRPCRTPVC
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

A0A5A7UUL6 Reverse transcriptase

3.5e-106

98.92

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC
        FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRPCRTPVC
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

A0A5D3BHI1 Reverse transcriptase

3.5e-106

98.92

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC
        FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRPCRTPVC
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

A0A5D3BS67 Reverse transcriptase

3.5e-106

98.92

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC
        FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRPCRTPVC
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

4.2e-32

37.29

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  ++++ +G P  I++D D  FTS+
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALY
         W          +KFS  + PQTDGQ+ERT QT+E +LR        +W  H+ L++ +YNN   S+  MTP+E ++
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALY

P0CT41 Transposon Tf2-12 polyprotein

4.2e-32

37.29

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  ++++ +G P  I++D D  FTS+
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALY
         W          +KFS  + PQTDGQ+ERT QT+E +LR        +W  H+ L++ +YNN   S+  MTP+E ++
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALY

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.4e-35

43.48

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQ +K  R R  G L PLP+ E +W  I+MDF+ GLP TS+  + I V+VDR +K   FI  + T    QL  L    I S +G P +I SDRD R T+ 
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTP
         +  L K +G     S++ HPQTDGQSERTIQTL  +LRA V     +W ++LP +EF YN+    ++G +P+E   G    TP
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTP

Q99315 Transposon Ty3-G Gag-Pol polyprotein

6.9e-35

42.93

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQ +K  R R  G L PLP+ E +W  I+MDF+ GLP TS+  + I V+VDR +K   FI  + T    QL  L    I S +G P +I SDRD R T+ 
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTP
         +  L K +G     S++ HPQTDGQSERTIQTL  +LRA       +W ++LP +EF YN+    ++G +P+E   G    TP
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTP

Q9UR07 Transposon Tf2-11 polyprotein

4.2e-32

37.29

Show/hide

Query:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK
        CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  ++++ +G P  I++D D  FTS+
Subjt:  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSK

Query:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALY
         W          +KFS  + PQTDGQ+ERT QT+E +LR        +W  H+ L++ +YNN   S+  MTP+E ++
Subjt:  FWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALY

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTGTGATGTTTTTGATTGTCAACAGGTTAAACCAGTAAGACAGAGGCCAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAATGGGAGCATATTACTATGGA
TTTTCTATTTGGATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGATTAAAATGACATCTACGT
TAGACCAGCTAGCAAGATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGT
TTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATG
TGTCCTACAACTTAAAGGAAGTTGGGATATCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGACACCATATGAAGCCTTATATG
GGAGACCATGCAGAACTCCTGTGTGCTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MCDVFDCQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPS
LQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

Cmc04g0101111 (gene) of Melon (Charmono) v1.1 genome