CuGenDBv2

Gene ID	Cmc04g0101171
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr04:17445307..17446210
RNA-Seq Expression	Cmc04g0101171
Synteny	Cmc04g0101171
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR041588 - Integrase zinc-binding domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035938.1 pol protein [Cucumis melo var. makuwa]

3.1e-158

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ PAGLLQPLSIPEWKWENVSMDFITGLPR+LRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSI                 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWD+HLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG
        TIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPR +G
Subjt:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG

KAA0043669.1 pol protein [Cucumis melo var. makuwa]

2.7e-157

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ PAGLLQPLSIPEWKWENVSMDFITGLPR+LRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSI                 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP SWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG
        TIGMAPFEALYGRCCRSPVCW EVGEQRLMGPELVQSTNEA+QKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPR +G
Subjt:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

6.3e-159

92.67

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ PAGLLQPLSIPEWKWENVSMDFITGLPR+LRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSI                 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG
        TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPR +G
Subjt:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

1.8e-158

92.33

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ PAGLLQPLSIPEWKWENVSMDFITGLPR+LRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSI                 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG
        TIGM PFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPR +G
Subjt:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

7.0e-158

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTK+YQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ PAGLLQPLSIPEWKWENVSMDFITGLPR+LRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSI                 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG
        TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPM+GV+RFERRGKLSPR +G
Subjt:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZD6 Pol protein

1.5e-158

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ PAGLLQPLSIPEWKWENVSMDFITGLPR+LRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSI                 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWD+HLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG
        TIGMAPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPR +G
Subjt:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG

A0A5A7TR61 Pol protein

1.3e-157

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ PAGLLQPLSIPEWKWENVSMDFITGLPR+LRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSI                 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFP SWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG
        TIGMAPFEALYGRCCRSPVCW EVGEQRLMGPELVQSTNEA+QKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPR +G
Subjt:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG

A0A5A7U7V9 Reverse transcriptase

3.1e-159

92.67

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ PAGLLQPLSIPEWKWENVSMDFITGLPR+LRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSI                 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG
        TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPR +G
Subjt:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG

A0A5A7VDP3 Pol protein

8.9e-159

92.33

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ PAGLLQPLSIPEWKWENVSMDFITGLPR+LRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSI                 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG
        TIGM PFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPR +G
Subjt:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG

A0A5A7VJE2 Reverse transcriptase

3.4e-158

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        MHPGSTK+YQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQ PAGLLQPLSIPEWKWENVSMDFITGLPR+LRGFTVIWVVVDRLTKSAHFVPGKSTY
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TASKWAQLYMSEIVRLHGVPVSI                 TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
Subjt:  TASKWAQLYMSEIVRLHGVPVSI-----------------TAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG
        TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPM+GV+RFERRGKLSPR +G
Subjt:  TIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLG

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.4e-36

31.46

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+    P G LQP+   E  WE++SMDFIT LP S  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSITAMGTR-----------------LDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I A                     + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSITAMGTR-----------------LDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRC-CRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMKGVLRFERRGKLSPRL
           M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P  
Subjt:  TIGMAPFEALYGRC-CRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMKGVLRFERRGKLSPRL

Query:  LG
         G
Subjt:  LG

P0CT41 Transposon Tf2-12 polyprotein

1.4e-36

31.46

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+    P G LQP+   E  WE++SMDFIT LP S  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSITAMGTR-----------------LDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I A                     + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSITAMGTR-----------------LDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRC-CRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMKGVLRFERRGKLSPRL
           M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P  
Subjt:  TIGMAPFEALYGRC-CRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMKGVLRFERRGKLSPRL

Query:  LG
         G
Subjt:  LG

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.1e-36

32.01

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Query:  HPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTYT
        H G T     +  +Y+W  ++  + +++  C+ CQ +K+ R    GLLQPL I E +W ++SMDF+TGLP +     +I VVVDR +K AHF+  + T  
Subjt:  HPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTYT

Query:  ASKWAQLYMSEIVRLHGVPVSITA-----------------MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT
        A++   L    I   HG P +IT+                 +G +   S+A HPQTDGQ+ER  Q L  +LRA       +W  +L  +EF YN++   T
Subjt:  ASKWAQLYMSEIVRLHGVPVSITA-----------------MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT

Query:  IGMAPFEALYGRCCRSPVCWG--EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFL
        +G +PFE   G    +P      EV  +     EL +       + + ++  AQ   ++  + RRK L   +GD V +
Subjt:  IGMAPFEALYGRCCRSPVCWG--EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFL

Q99315 Transposon Ty3-G Gag-Pol polyprotein

3.7e-37

32.37

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Query:  HPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTYT
        H G T     +  +Y+W  ++  + +++  C+ CQ +K+ R    GLLQPL I E +W ++SMDF+TGLP +     +I VVVDR +K AHF+  + T  
Subjt:  HPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTYT

Query:  ASKWAQLYMSEIVRLHGVPVSITA-----------------MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT
        A++   L    I   HG P +IT+                 +G +   S+A HPQTDGQ+ER  Q L  +LRA A     +W  +L  +EF YN++   T
Subjt:  ASKWAQLYMSEIVRLHGVPVSITA-----------------MGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT

Query:  IGMAPFEALYGRCCRSPVCWG--EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFL
        +G +PFE   G    +P      EV  +     EL +       + + ++  AQ   ++  + RRK L   +GD V +
Subjt:  IGMAPFEALYGRCCRSPVCWG--EVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFL

Q9UR07 Transposon Tf2-11 polyprotein

1.4e-36

31.46

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Query:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY
        +HPG   +   + R + W+ +++++ E+V  C  CQ  K+    P G LQP+   E  WE++SMDFIT LP S  G+  ++VVVDR +K A  VP   + 
Subjt:  MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTY

Query:  TASKWAQLYMSEIVRLHGVPVSITAMGTR-----------------LDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA
        TA + A+++   ++   G P  I A                     + FS  + PQTDGQTER NQ +E +LR      P +W  H+ L++ +YNN+  +
Subjt:  TASKWAQLYMSEIVRLHGVPVSITAMGTR-----------------LDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQA

Query:  TIGMAPFEALYGRC-CRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMKGVLRFERRGKLSPRL
           M PFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P  
Subjt:  TIGMAPFEALYGRC-CRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDL-EFEVGDKVFLKVAPMKGVLRFERRGKLSPRL

Query:  LG
         G
Subjt:  LG

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACATGAAGAGGGAAGTAGCAGAATTTGTTAGTAAATGCCTGGTGTGTCAGCA
GGTTAAGGCACCAAGGCAGAACCCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGGAAGTGGGAGAACGTGTCCATGGATTTCATTACAGGGCTACCGAGAAGTC
TGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATG
TCTGAGATAGTGAGATTACACGGAGTGCCAGTGTCGATTACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCT
GAACCAGGTTTTAGAGGATATGTTGCGAGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTA
CTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTAGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCT
ACTAACGAAGCGATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTTGAGGTAGGGGATAA
GGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTGTTGGGCGTTTGA

mRNA sequence

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Protein sequence

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MHPGSTKMYQDLKRVYWWRNMKREVAEFVSKCLVCQQVKAPRQNPAGLLQPLSIPEWKWENVSMDFITGLPRSLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYM
SEIVRLHGVPVSITAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQS
TNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRLLGV

Cmc04g0101171 (gene) of Melon (Charmono) v1.1 genome