CuGenDBv2

Gene ID	Cmc04g0101191
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr04:17467338..17468256
RNA-Seq Expression	Cmc04g0101191
Synteny	Cmc04g0101191
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

1.9e-152

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0051368.1 pol protein [Cucumis melo var. makuwa]

2.5e-152

97.43

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0063715.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.2e-152

97.06

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT+GM PFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVLRF+RRGKLSPRFVGPFEI+ERIGPVAYR+ALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

2.5e-152

97.43

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

KAA0066456.1 pol protein [Cucumis melo var. makuwa]

1.9e-152

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U7V9 Reverse transcriptase

1.2e-152

97.43

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7VCR4 Ty3-gypsy retrotransposon protein

3.5e-152

97.06

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQAT+GM PFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGVLRF+RRGKLSPRFVGPFEI+ERIGPVAYR+ALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7VDP3 Pol protein

1.2e-152

97.43

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFE+GDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

A0A5A7VJE2 Reverse transcriptase

9.1e-153

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPMRGV+RFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

Q84KB0 Pol protein

9.1e-153

97.79

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLY+SEIVRLHGVPVSIV DRDARFTSKFWKGLQTAMGTRLDFSTAFHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVR

Query:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
        RKDLEFEVGDKVFLKVAPM+GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK
Subjt:  RKDLEFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

1.5e-38

35.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I+ D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT35 Transposon Tf2-2 polyprotein

1.5e-38

35.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I+ D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT36 Transposon Tf2-3 polyprotein

1.5e-38

35.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I+ D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

P0CT41 Transposon Tf2-12 polyprotein

1.5e-38

35.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I+ D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

Q9UR07 Transposon Tf2-11 polyprotein

1.5e-38

35.27

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I+ D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++  ++T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADV

Query:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK
        + +++ EF+ GD V +K     G L   +  KL+P F GPF +L++ GP  Y L LP S+  +    FHVS L K
Subjt:  RRKDL-EFEVGDKVFLKVAPMRGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTV-HDVFHVSMLRK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTTCATTACAGGGCTGCCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACCAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTA
TACTGCTAGTAAGTGGGCACAGCTGTACTTGTCGGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTTTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGA
AGGGTTTGCAGACTGCTATGGGCACGAGGTTAGACTTTAGTACAGCTTTCCATCCACAGATTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGA
GCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGACACCATTTGAGGCCTT
GTACGGCAAATGTTGTAGATCCCCGGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATACAGAAGATTAGAT
CACGCATGCATACCGCTCAGAGTAGGCAGAAGAGTTATGCAGATGTGAGGCGGAAGGATCTTGAGTTTGAGGTAGGGGACAAGGTGTTCTTAAAGGTAGCACCTATGAGA
GGTGTCTTACGATTTGAAAGGAGGGGAAAGCTGAGTCCCCGTTTTGTTGGGCCGTTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTGCCACCATC
ACTCTCGACAGTTCATGATGTGTTTCATGTTTCTATGTTGAGGAAGTGA

mRNA sequence

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Protein sequence

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MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYLSEIVRLHGVPVSIVFDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQIDGQTERLNQVLEDMLR
ACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMR
GVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRK

Cmc04g0101191 (gene) of Melon (Charmono) v1.1 genome