CuGenDBv2

Gene ID	Cmc04g0101301
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related pol polyprotein from transposon tnt 1-94
Genome location	CMiso1.1chr04:17610506..17610805
RNA-Seq Expression	Cmc04g0101301
Synteny	Cmc04g0101301
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0056915.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

3.0e-47

96.97

Show/hide

Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        MESPTTTHLKV KRILRYLRGTLDYGLFYSSSKEFKLEGY DSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYV AASCVCHAVWL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

TYK03241.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.0e-47

96.97

Show/hide

Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        MESPTTTHLKV KRILRYLRGTLDYGLFYSSSKEFKLEGY DSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYV AASCVCHAVWL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

TYK06895.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.0e-47

96.97

Show/hide

Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        MESPTTTHLKV KRILRYLRGTLDYGLFYSSSKEFKLEGY DSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYV AASCVCHAVWL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.0e-47

96.97

Show/hide

Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        MESPTTTHLKV KRILRYLRGTLDYGLFYSSSKEFKLEGY DSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYV AASCVCHAVWL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

TYK18362.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.0e-47

96.97

Show/hide

Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        MESPTTTHLKV KRILRYLRGTLDYGLFYSSSKEFKLEGY DSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYV AASCVCHAVWL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SH73 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-47

96.97

Show/hide

Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        MESPTTTHLKV KRILRYLRGTLDYGLFYSSSKEFKLEGY DSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYV AASCVCHAVWL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-47

96.97

Show/hide

Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        MESPTTTHLKV KRILRYLRGTLDYGLFYSSSKEFKLEGY DSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYV AASCVCHAVWL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-47

96.97

Show/hide

Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        MESPTTTHLKV KRILRYLRGTLDYGLFYSSSKEFKLEGY DSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYV AASCVCHAVWL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

A0A5D3D497 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-47

96.97

Show/hide

Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        MESPTTTHLKV KRILRYLRGTLDYGLFYSSSKEFKLEGY DSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYV AASCVCHAVWL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

A0A5D3D557 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.4e-47

96.97

Show/hide

Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        MESPTTTHLKV KRILRYLRGTLDYGLFYSSSKEFKLEGY DSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYV AASCVCHAVWL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

SwissProt top hits

e value

%identity

Alignment

P0CV72 Secreted RxLR effector protein 161

1.1e-17

46.88

Show/hide

Query:  PTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        P  TH +  KR+LRYL+ T  YGL ++ +   KL GY D+DWAGD   R+STSGY+F +     +W SKKQ  V LS+ E EY+  +     AVWL
Subjt:  PTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.5e-14

44.44

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Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        +E+P   H +  K ILRYLRGT    L +  S    L+GY D+D AGD ++RKS++GY+F     A +W SK Q  V LST EAEY+ A       +WL
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

P92519 Uncharacterized mitochondrial protein AtMg00810

2.4e-15

37.76

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Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVW
        M  PT     + KR+LRY++GT+ +GL+   + +  ++ + DSDWAG T+ R+ST+G+  F+G    +WS+K+QP V+ S+ E EY   A       W
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

3.3e-17

44.44

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Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        M  PT  HL+  KRILRYL GT ++G+F        L  Y D+DWAGD +D  ST+GY+ ++G+   +WSSKKQ  V  S+ EAEY   A+      W+
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.5e-17

44.44

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Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        M  PT  H    KR+LRYL GT D+G+F        L  Y D+DWAGDT+D  ST+GY+ ++G+   +WSSKKQ  V  S+ EAEY   A+      W+
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

3.2e-15

37.76

Show/hide

Query:  ESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL
        E+P   H +   +IL Y++GT+  GLFYSS  E +L+ + D+ +    + R+ST+GY  F+G +  +W SKKQ +V+ S+ EAEY   +      +WL
Subjt:  ESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

ATMG00240.1 Gag-Pol-related retrotransposon family protein

2.1e-06

35.85

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Query:  TTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGY
        T  ++   ++L Y++GT+  GLFYS++ + +L+ + DSDWA   + R+S +G+
Subjt:  TTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGY

ATMG00810.1 DNA/RNA polymerases superfamily protein

1.7e-16

37.76

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Query:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVW
        M  PT     + KR+LRY++GT+ +GL+   + +  ++ + DSDWAG T+ R+ST+G+  F+G    +WS+K+QP V+ S+ E EY   A       W
Subjt:  MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVW

Sequences

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CDS sequence

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ATGGAATCTCCTACAACTACTCATTTGAAAGTGACAAAGAGAATTCTTCGTTACCTCAGAGGTACGCTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTCAAGCT
TGAAGGCTATTATGATAGTGACTGGGCTGGAGATACTAATGATCGAAAGAGCACTAGTGGATATGTTTTCTTCATTGGCAATACTGCATTTACATGGAGTTCTAAGAAGC
AACCTATTGTGACATTATCCACTTGTGAGGCAGAATACGTTGTTGCAGCTTCCTGTGTTTGTCATGCAGTTTGGTTATGA

mRNA sequence

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Protein sequence

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MESPTTTHLKVTKRILRYLRGTLDYGLFYSSSKEFKLEGYYDSDWAGDTNDRKSTSGYVFFIGNTAFTWSSKKQPIVTLSTCEAEYVVAASCVCHAVWL

Cmc04g0101301 (gene) of Melon (Charmono) v1.1 genome