| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 2.3e-97 | 86.89 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
MDVKT FLNGNLEESIYMVQPEGFI + QEQKVCKL+KSIYGLKQASRSWNI+FD AIKSY FEQNVDEPCVYKKI+NS VAFL+LYVDDILLIGNDV +
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
LTD+KKWL TQFQMKDLG AQY+LGIQIV+NRKNKTLAMSQ SYIDK+LSRYKMQNSKK LP+R+GIHLSKEQCPKTPQEVEDM NIPY+SAVGS MYA
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRP
MLCTRP
Subjt: MLCTRP
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| KAA0045356.1 gag/pol protein [Cucumis melo var. makuwa] | 1.4e-102 | 92.23 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
MDVKT FLNGNLEESIYMVQPEGFIQKGQEQKVCKL+KSIYGLKQASRSWNI+FD IKSY FEQNVDEPCVYK+IINSTVAFLVLYVDDILLIGN+V H
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
LTDIK+WL TQFQMKDLG+AQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKK LLPYRYGIHLSKEQCPKTPQEV+DMSNIPYASAVGS MYA
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRP
MLC RP
Subjt: MLCTRP
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| TYK03644.1 gag/pol protein [Cucumis melo var. makuwa] | 9.8e-101 | 90.34 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
MDVKTTFLN NLEESIYMVQPE FIQKGQEQK+CKL+KSIYGLKQASRS NI+FD AIKSY EQNVDEPCVYK+I+NSTVAFLVLYVDDILLIGNDVGH
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
L DIKKWLA QFQMKDLGNAQYVLG+QIV+NRKNKTLAMSQTSYIDKMLSRYKM NSKK LLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGS MY
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRPS
MLCTRP+
Subjt: MLCTRPS
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| TYK09500.1 gag/pol protein [Cucumis melo var. makuwa] | 4.5e-98 | 86.41 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
+DVKT FLNGNLEESIYM QPEGFI+KGQEQK+CK +KSIYGLKQASRSWNI+FD AIKSY FEQNVD+PCVYKK++NS VAFLVLYVDDILL+GNDVG+
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
LTDIKKWLATQFQMKD G+AQYVLGIQIV+NRKN+TLAMS+ SYIDKMLSRYKMQNSKK LLPYRYGIHLSKEQCPKTPQEVEDM IPYA VGS MYA
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRP
MLCTRP
Subjt: MLCTRP
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| TYK11050.1 gag/pol protein [Cucumis melo var. makuwa] | 2.0e-93 | 92.02 | Show/hide |
Query: MVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDL
MVQPEGFIQKGQEQKVCKLKKSIYGLKQ +RSWNI+FD AIKSY FEQNVDEPCVYK+ IN+TVAFL+LYVDDILLIGNDVGHLTDIK+WLATQFQMKDL
Subjt: MVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDL
Query: GNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYAMLCTR
GNAQYVLGIQIV+N KNKTLAMSQTSYIDKMLSRYKMQNSKK LLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASA+GS MYAMLCTR
Subjt: GNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYAMLCTR
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TTA2 Gag/pol protein | 6.6e-103 | 92.23 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
MDVKT FLNGNLEESIYMVQPEGFIQKGQEQKVCKL+KSIYGLKQASRSWNI+FD IKSY FEQNVDEPCVYK+IINSTVAFLVLYVDDILLIGN+V H
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
LTDIK+WL TQFQMKDLG+AQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKK LLPYRYGIHLSKEQCPKTPQEV+DMSNIPYASAVGS MYA
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRP
MLC RP
Subjt: MLCTRP
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| A0A5D3BX45 Gag/pol protein | 4.7e-101 | 90.34 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
MDVKTTFLN NLEESIYMVQPE FIQKGQEQK+CKL+KSIYGLKQASRS NI+FD AIKSY EQNVDEPCVYK+I+NSTVAFLVLYVDDILLIGNDVGH
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
L DIKKWLA QFQMKDLGNAQYVLG+QIV+NRKNKTLAMSQTSYIDKMLSRYKM NSKK LLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGS MY
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRPS
MLCTRP+
Subjt: MLCTRPS
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| A0A5D3CDT9 Gag/pol protein | 2.2e-98 | 86.41 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
+DVKT FLNGNLEESIYM QPEGFI+KGQEQK+CK +KSIYGLKQASRSWNI+FD AIKSY FEQNVD+PCVYKK++NS VAFLVLYVDDILL+GNDVG+
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
LTDIKKWLATQFQMKD G+AQYVLGIQIV+NRKN+TLAMS+ SYIDKMLSRYKMQNSKK LLPYRYGIHLSKEQCPKTPQEVEDM IPYA VGS MYA
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRP
MLCTRP
Subjt: MLCTRP
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| A0A5D3CI71 Gag/pol protein | 9.6e-94 | 92.02 | Show/hide |
Query: MVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDL
MVQPEGFIQKGQEQKVCKLKKSIYGLKQ +RSWNI+FD AIKSY FEQNVDEPCVYK+ IN+TVAFL+LYVDDILLIGNDVGHLTDIK+WLATQFQMKDL
Subjt: MVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGHLTDIKKWLATQFQMKDL
Query: GNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYAMLCTR
GNAQYVLGIQIV+N KNKTLAMSQTSYIDKMLSRYKMQNSKK LLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASA+GS MYAMLCTR
Subjt: GNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYAMLCTR
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| E2GK51 Gag/pol protein (Fragment) | 1.1e-97 | 86.89 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
MDVKT FLNGNLEESIYMVQPEGFI + QEQKVCKL+KSIYGLKQASRSWNI+FD AIKSY FEQNVDEPCVYKKI+NS VAFL+LYVDDILLIGNDV +
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
LTD+KKWL TQFQMKDLG AQY+LGIQIV+NRKNKTLAMSQ SYIDK+LSRYKMQNSKK LP+R+GIHLSKEQCPKTPQEVEDM NIPY+SAVGS MYA
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRP
MLCTRP
Subjt: MLCTRP
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 3.6e-29 | 37.09 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVY---KKIINSTVAFLVLYVDDILLIGND
MDVKT FLNG L+E IYM P+G VCKL K+IYGLKQA+R W F+ A+K F + + C+Y K IN + +++LYVDD+++ D
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVY---KKIINSTVAFLVLYVDDILLIGND
Query: VGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLP----YRYGIHLSKEQCPKTPQEVEDMSNIPYASA
+ + + K++L +F+M DL ++ +GI+I + + +SQ++Y+ K+LS++ M+N P Y + S E C N P S
Subjt: VGHLTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLP----YRYGIHLSKEQCPKTPQEVEDMSNIPYASA
Query: VGSPMYAMLCTRP
+G MY MLCTRP
Subjt: VGSPMYAMLCTRP
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.7e-52 | 49.28 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVY-KKIINSTVAFLVLYVDDILLIGNDVG
+DVKT FL+G+LEE IYM QPEGF G++ VCKL KS+YGLKQA R W +KFD +KS + + +PCVY K+ + L+LYVDD+L++G D G
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVY-KKIINSTVAFLVLYVDDILLIGNDVG
Query: HLTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMY
+ +K L+ F MKDLG AQ +LG++IV+ R ++ L +SQ YI+++L R+ M+N+K P + LSK+ CP T +E +M+ +PY+SAVGS MY
Subjt: HLTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMY
Query: AMLCTRP
AM+CTRP
Subjt: AMLCTRP
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| P25600 Putative transposon Ty5-1 protein YCL074W | 3.1e-17 | 30.58 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
MDV T FLN ++E IY+ QP GF+ + V +L +YGLKQA WN + +K F ++ E +Y + + ++ +YVDD+L+
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
+K+ L + MKDLG LG+ I Q+ N + +S YI K S ++ K P + SK T ++D++ PY S VG ++
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRP
RP
Subjt: MLCTRP
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 9.4e-22 | 33.98 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
+DV FL G L + +YM QP GFI K + VCKL+K++YGLKQA R+W ++ + + F +V + ++ ++ ++++YVDDIL+ GND
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
L + L+ +F +KD Y LGI+ R L +SQ YI +L+R M +K P LS K E Y VGS Y
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRP
+ TRP
Subjt: MLCTRP
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 7.2e-22 | 32.04 | Show/hide |
Query: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
+DV FL G L + +YM QP GF+ K + VC+L+K+IYGLKQA R+W ++ + + F ++ + ++ ++ ++++YVDDIL+ GND
Subjt: MDVKTTFLNGNLEESIYMVQPEGFIQKGQEQKVCKLKKSIYGLKQASRSWNIKFDIAIKSYCFEQNVDEPCVYKKIINSTVAFLVLYVDDILLIGNDVGH
Query: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
L L+ +F +K+ + Y LGI+ R + L +SQ Y +L+R M +K P L+ K P E Y VGS Y
Subjt: LTDIKKWLATQFQMKDLGNAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKKDLLPYRYGIHLSKEQCPKTPQEVEDMSNIPYASAVGSPMYA
Query: MLCTRP
+ TRP
Subjt: MLCTRP
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