; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0101501 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0101501
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationCMiso1.1chr04:17870614..17871432
RNA-Seq ExpressionCmc04g0101501
SyntenyCmc04g0101501
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KZV31144.1 hypothetical protein F511_24590 [Dorcoceras hygrometricum]2.1e-9564.29Show/hide
Query:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQ-------NRSNDELNTD--EELRRS
        VKIGPK  D IFIGYA+N+ AYRFLV +SDI  IH +T +  RNA FFENVFP K        +   N  ++E++        RS ++++    +E RRS
Subjt:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQ-------NRSNDELNTD--EELRRS

Query:  KRMRISKSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGL
        KR RI KSFG DF++Y+L+NEP+T KE +SSP+AP WKE VNSEIESIMHNHTWELVDLP G+KPLG KWI K K K DG+IDKYKARLV KG++Q+EG+
Subjt:  KRMRISKSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGL

Query:  DYFDTYSPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ
        DYFDTYSPV+RITSIRM IAI+ LH  EIHQMD+KT FLNGEL+EEIY+++PEG V+P QEKNVC+L++SLYGLKQAPKQ
Subjt:  DYFDTYSPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ

PSR86206.1 Endonuclease [Actinidia chinensis var. chinensis]3.9e-9765.56Show/hide
Query:  KIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRISKSFG
        KIGPK +DC+FIGYA N+ AYRFLV +S I DIH +T M  RNA+FFE++FP++   E+   +R+ +     SQ++ ++    + +LRRSKR RIS SFG
Subjt:  KIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRISKSFG

Query:  LDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVS
         DFLTY+L++EPQT+KE +S PE P WKE + SEIESI+ NHTWELV+LP GSKPLG KWIFKRKMK DGSIDKYKARLV KGY+Q+EGLDYFDTYSPVS
Subjt:  LDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVS

Query:  RITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ
        RITSIRM IAI+ L   EIHQMD+KT FLNG+LDEEIY+++PEG  +P +E  VC+L+RSLYGLKQAPKQ
Subjt:  RITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ

PSS35063.1 Endonuclease [Actinidia chinensis var. chinensis]3.9e-9765.56Show/hide
Query:  KIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRISKSFG
        KIGPK +DC+FIGYA N+ AYRFLV +S I DIH +T M  RNA+FFE++FP++   E+   +R+ +     SQ++ ++    + +LRRSKR RIS SFG
Subjt:  KIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRISKSFG

Query:  LDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVS
         DFLTY+L++EPQT+KE +S PE P WKE + SEIESI+ NHTWELV+LP GSKPLG KWIFKRKMK DGSIDKYKARLV KGY+Q+EGLDYFDTYSPVS
Subjt:  LDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVS

Query:  RITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ
        RITSIRM IAI+ L   EIHQMD+KT FLNG+LDEEIY+++PEG  +P +E  VC+L+RSLYGLKQAPKQ
Subjt:  RITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ

RVW67328.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.6e-10368.25Show/hide
Query:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQ---NRSNDELNTDEELRRSKRMRIS
        VKI PK IDCIFIGYA+N+ AYRFLV +S+I D+HVNTI+  RNA FFE +FP+    E   ++R+ +     +Q   N+ + E   DE+ RR KR R S
Subjt:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQ---NRSNDELNTDEELRRSKRMRIS

Query:  KSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTY
         SFG DFLTYLL+N+PQTFKE MSSPEA YWKE +NSEIESI+ NHTWELVDLP G+K LGCKWIFK+KMK DGSIDKYKARLV KGYKQ+EGLDYFDTY
Subjt:  KSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTY

Query:  SPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ
        SPVSRITSIRM IAI+ ++  +IHQMD+KTTFLNGELDEEIY+ +PEG ++P QE+ VCKL++SLYGLKQAPKQ
Subjt:  SPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ

RVW67960.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.6e-10367.88Show/hide
Query:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQ---NRSNDELNTDEELRRSKRMRIS
        VKIGPK IDCIFIGYA+N+ AYRFLV +S+I D+HVNTI+  RNA FFE +FP+    E   ++R+ +     +Q   N+ + E   D++LRR KR R S
Subjt:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQ---NRSNDELNTDEELRRSKRMRIS

Query:  KSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTY
         SFG DFLTYLL+N+PQTFKE MSSPEA YWKE +NSEIESI+ NHTWELVDLP G+K LGCKWIFK+KMK +GSIDKYKARLV KGYKQ+EGLDYFDTY
Subjt:  KSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTY

Query:  SPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ
        SPVS+ITSIRM IAI+ ++  EIHQMD+KT FLNGELDEEIY+ +PEG ++P QE  VCKL++SLYGLKQAPKQ
Subjt:  SPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ

TrEMBL top hitse value%identityAlignment
A0A2N9FGP9 Integrase catalytic domain-containing protein3.6e-10166.79Show/hide
Query:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRISKSF
        VKIGPK +DC+FIGYA N+ AYRFL+ +SDI D+HVNTI+  RN +FFE +FP K + E    +R+  + +S S ++   E   + E RRSKR + SK+F
Subjt:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRISKSF

Query:  GLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPV
        G DFLT++L++EPQ+FKE MS PEAP WKE VNSEIESI+ NHTWELVDLP G KPLG KWIFKRKMK DGSIDKYKARLV KGYKQ+EG+DYFDTYSPV
Subjt:  GLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPV

Query:  SRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ
        +RITSIRM IAI+ L+  EIHQMD+KT FLNGELDEEIY+++PEG + P +EK VC+L++SLYGLKQAPKQ
Subjt:  SRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ

A0A2N9HX08 Integrase catalytic domain-containing protein4.8e-10166.79Show/hide
Query:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEA---RLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRIS
        VKIGPK +DC+FIGYA N+ AYRFL+ +SDI D+HVNTI+  RNA+FFE +FP K + E       +R+  + +S S ++   E   + E RRSKR ++S
Subjt:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEA---RLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRIS

Query:  KSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTY
        K+FGLDFLT++L++EPQ+FKE MS PEAP WKE VNSEIESI+ NHTWELVDLP G KPLG KWIFKRKMK DGSIDKYKARLV KGYKQ+EG+DYFDTY
Subjt:  KSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTY

Query:  SPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ
        SPV+RITSIRM IAI+ L+  EIHQMD+KT FLNGELDEEIY+++PEG + P +EK VC+L++SLYGLKQAPKQ
Subjt:  SPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ

A0A2N9J5F7 Integrase catalytic domain-containing protein1.6e-10167.16Show/hide
Query:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRISKSF
        VKIGPK +DC+FIGYA N+ AYRFL+ +SDI D+HVNTI+  RNA+FFE +FP K + E    +R+  + +S S ++   E   + E RRSKR + SK+F
Subjt:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRISKSF

Query:  GLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPV
        G DFLT++L++EPQ+FKE MS PEAP WKE VNSEIESI+ NHTWELVDLP G KPLG KWIFKRKMK DGSIDKYKARLV KGYKQ+EG+DYFDTYSPV
Subjt:  GLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPV

Query:  SRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ
        +RITSIRM IAI+ L+  EIHQMD+KT FLNGELDEEIY+++PEG + P +EK VC+L++SLYGLKQAPKQ
Subjt:  SRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ

A0A438G546 Retrovirus-related Pol polyprotein from transposon TNT 1-947.9e-10468.25Show/hide
Query:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQ---NRSNDELNTDEELRRSKRMRIS
        VKI PK IDCIFIGYA+N+ AYRFLV +S+I D+HVNTI+  RNA FFE +FP+    E   ++R+ +     +Q   N+ + E   DE+ RR KR R S
Subjt:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQ---NRSNDELNTDEELRRSKRMRIS

Query:  KSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTY
         SFG DFLTYLL+N+PQTFKE MSSPEA YWKE +NSEIESI+ NHTWELVDLP G+K LGCKWIFK+KMK DGSIDKYKARLV KGYKQ+EGLDYFDTY
Subjt:  KSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTY

Query:  SPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ
        SPVSRITSIRM IAI+ ++  +IHQMD+KTTFLNGELDEEIY+ +PEG ++P QE+ VCKL++SLYGLKQAPKQ
Subjt:  SPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ

A0A438G6X1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-10367.88Show/hide
Query:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQ---NRSNDELNTDEELRRSKRMRIS
        VKIGPK IDCIFIGYA+N+ AYRFLV +S+I D+HVNTI+  RNA FFE +FP+    E   ++R+ +     +Q   N+ + E   D++LRR KR R S
Subjt:  VKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQ---NRSNDELNTDEELRRSKRMRIS

Query:  KSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTY
         SFG DFLTYLL+N+PQTFKE MSSPEA YWKE +NSEIESI+ NHTWELVDLP G+K LGCKWIFK+KMK +GSIDKYKARLV KGYKQ+EGLDYFDTY
Subjt:  KSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTY

Query:  SPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ
        SPVS+ITSIRM IAI+ ++  EIHQMD+KT FLNGELDEEIY+ +PEG ++P QE  VCKL++SLYGLKQAPKQ
Subjt:  SPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ

SwissProt top hitse value%identityAlignment
P04146 Copia protein9.4e-3033.85Show/hide
Query:  NRSNDELNTDEELRRSKRMRISKSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDK
        NR ++ L T  ++  ++         L+  T +  + P +F E+    +   W+E +N+E+ +   N+TW +   P     +  +W+F  K    G+  +
Subjt:  NRSNDELNTDEELRRSKRMRISKSFGLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDK

Query:  YKARLVTKGYKQQEGLDYFDTYSPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPK
        YKARLV +G+ Q+  +DY +T++PV+RI+S R  +++   +  ++HQMD+KT FLNG L EEIY++ P+G+       NVCKL +++YGLKQA +
Subjt:  YKARLVTKGYKQQEGLDYFDTYSPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPK

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-4234.08Show/hide
Query:  KIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQ---RSFNAITSESQNRSNDELNTDE------------
        K+  K+I CIFIGY      YR       + D     ++  R+  F E+          +++     +F  I S S N ++ E  TDE            
Subjt:  KIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQ---RSFNAITSESQNRSNDELNTDE------------

Query:  ------------------------ELRRSKRMRI-SKSF-GLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCK
                                 LRRS+R R+ S+ +   +++      EP++ KEV+S PE     + +  E+ES+  N T++LV+LP G +PL CK
Subjt:  ------------------------ELRRSKRMRI-SKSF-GLDFLTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCK

Query:  WIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIR
        W+FK K   D  + +YKARLV KG++Q++G+D+ + +SPV ++TSIR  ++++     E+ Q+D+KT FL+G+L+EEIY+++PEG     ++  VCKL +
Subjt:  WIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIR

Query:  SLYGLKQAPKQ
        SLYGLKQAP+Q
Subjt:  SLYGLKQAPKQ

P92520 Uncharacterized mitochondrial protein AtMg008201.5e-1942.72Show/hide
Query:  LTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSRIT
        +T  +K EP   K V+ + + P W + +  E++++  N TW LV  P+    LGCKW+FK K+ +DG++D+ KARLV KG+ Q+EG+ + +TYSPV R  
Subjt:  LTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSRIT

Query:  SIR
        +IR
Subjt:  SIR

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.4e-3541.98Show/hide
Query:  KNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPL-GCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSRITSIRM
        ++EP+T  + +       W+  + SEI + + NHTW+LV  P     + GC+WIF +K  +DGS+++YKARLV KGY Q+ GLDY +T+SPV + TSIR+
Subjt:  KNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPL-GCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSRITSIRM

Query:  PIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPK
         + ++    + I Q+D+   FL G L +++Y+ +P G +  D+   VCKL ++LYGLKQAP+
Subjt:  PIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPK

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.0e-3540.31Show/hide
Query:  LNTDEELRRSKRMRISKSFGLDFLTYLLKN-EPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPL-GCKWIFKRKMKTDGSIDKYKAR
        +NT     R+K      +    + T L  N EP+T  + M       W++ + SEI + + NHTW+LV  P  S  + GC+WIF +K  +DGS+++YKAR
Subjt:  LNTDEELRRSKRMRISKSFGLDFLTYLLKN-EPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPL-GCKWIFKRKMKTDGSIDKYKAR

Query:  LVTKGYKQQEGLDYFDTYSPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPK
        LV KGY Q+ GLDY +T+SPV + TSIR+ + ++    + I Q+D+   FL G L +E+Y+ +P G V  D+   VC+L +++YGLKQAP+
Subjt:  LVTKGYKQQEGLDYFDTYSPVSRITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.2e-4145.66Show/hide
Query:  FLTYLLK-NEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSR
        FL  + K  EP T+ E   + E   W   ++ EI ++   HTWE+  LP   KP+GCKW++K K  +DG+I++YKARLV KGY QQEG+D+ +T+SPV +
Subjt:  FLTYLLK-NEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSR

Query:  ITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQE----KNVCKLIRSLYGLKQAPKQ
        +TS+++ +AIS ++ F +HQ+DI   FLNG+LDEEIY++ P G  +   +      VC L +S+YGLKQA +Q
Subjt:  ITSIRMPIAISTLHGFEIHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQE----KNVCKLIRSLYGLKQAPKQ

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.1e-2042.72Show/hide
Query:  LTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSRIT
        +T  +K EP   K V+ + + P W + +  E++++  N TW LV  P+    LGCKW+FK K+ +DG++D+ KARLV KG+ Q+EG+ + +TYSPV R  
Subjt:  LTYLLKNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSRIT

Query:  SIR
        +IR
Subjt:  SIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAAAATAGGACCAAAAGCTATTGATTGCATATTTATTGGTTATGCTAGCAACAATTGTGCATATCGATTTCTAGTTCGTCAATCAGATATCTCAGATATACATGT
TAATACGATCATGTTACTAAGGAATGCAACATTCTTTGAGAATGTTTTTCCACACAAAATGTCTTGTGAAGCAAGGTTAGAACAACGTTCTTTTAATGCTATAACGAGTG
AATCTCAAAATAGATCAAATGATGAGTTAAACACGGATGAGGAACTTAGACGAAGTAAAAGGATGAGGATCTCAAAATCATTTGGGCTTGATTTTTTAACATATTTGTTA
AAAAATGAACCTCAAACATTTAAAGAGGTCATGTCCTCTCCTGAAGCTCCATATTGGAAAGAGGTTGTGAATAGTGAAATAGAGTCCATTATGCATAACCATACTTGGGA
GCTAGTTGATCTTCCATTAGGAAGTAAACCACTTGGTTGCAAATGGATTTTCAAACGAAAGATGAAGACCGATGGGTCAATAGATAAATATAAGGCAAGACTTGTTACCA
AAGGTTATAAGCAACAAGAAGGACTTGACTATTTTGATACATACTCACCAGTTAGTAGAATTACTTCCATTCGCATGCCCATAGCAATATCAACTTTGCATGGATTTGAG
ATACATCAAATGGATATCAAAACAACATTTTTAAATGGTGAGTTAGATGAAGAGATCTACATACAAAAACCTGAAGGGTTGGTTTCCCCCGATCAAGAAAAGAATGTTTG
CAAATTAATTAGGTCTCTTTATGGACTAAAACAAGCACCAAAACAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTAAAATAGGACCAAAAGCTATTGATTGCATATTTATTGGTTATGCTAGCAACAATTGTGCATATCGATTTCTAGTTCGTCAATCAGATATCTCAGATATACATGT
TAATACGATCATGTTACTAAGGAATGCAACATTCTTTGAGAATGTTTTTCCACACAAAATGTCTTGTGAAGCAAGGTTAGAACAACGTTCTTTTAATGCTATAACGAGTG
AATCTCAAAATAGATCAAATGATGAGTTAAACACGGATGAGGAACTTAGACGAAGTAAAAGGATGAGGATCTCAAAATCATTTGGGCTTGATTTTTTAACATATTTGTTA
AAAAATGAACCTCAAACATTTAAAGAGGTCATGTCCTCTCCTGAAGCTCCATATTGGAAAGAGGTTGTGAATAGTGAAATAGAGTCCATTATGCATAACCATACTTGGGA
GCTAGTTGATCTTCCATTAGGAAGTAAACCACTTGGTTGCAAATGGATTTTCAAACGAAAGATGAAGACCGATGGGTCAATAGATAAATATAAGGCAAGACTTGTTACCA
AAGGTTATAAGCAACAAGAAGGACTTGACTATTTTGATACATACTCACCAGTTAGTAGAATTACTTCCATTCGCATGCCCATAGCAATATCAACTTTGCATGGATTTGAG
ATACATCAAATGGATATCAAAACAACATTTTTAAATGGTGAGTTAGATGAAGAGATCTACATACAAAAACCTGAAGGGTTGGTTTCCCCCGATCAAGAAAAGAATGTTTG
CAAATTAATTAGGTCTCTTTATGGACTAAAACAAGCACCAAAACAATGA
Protein sequenceShow/hide protein sequence
MVKIGPKAIDCIFIGYASNNCAYRFLVRQSDISDIHVNTIMLLRNATFFENVFPHKMSCEARLEQRSFNAITSESQNRSNDELNTDEELRRSKRMRISKSFGLDFLTYLL
KNEPQTFKEVMSSPEAPYWKEVVNSEIESIMHNHTWELVDLPLGSKPLGCKWIFKRKMKTDGSIDKYKARLVTKGYKQQEGLDYFDTYSPVSRITSIRMPIAISTLHGFE
IHQMDIKTTFLNGELDEEIYIQKPEGLVSPDQEKNVCKLIRSLYGLKQAPKQ