; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0101691 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0101691
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr04:18107684..18108268
RNA-Seq ExpressionCmc04g0101691
SyntenyCmc04g0101691
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035460.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.4e-6372.41Show/hide
Query:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
        MVANV YTS +EPTTV+A L DEHWILA+QEELLQFERNQVW LVPKPP+ NIIGTKWIFKNK DE+GR+IRNK R VAQGYSQI+GLDFGETFAP ARL
Subjt:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL

Query:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNK
        EAIRL+LS+ CF  FKLFQMDVKSVFLNGYLSEEVYVAQPKG++   + +     L K L +G++ +P   Y +
Subjt:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNK

KAA0058506.1 flocculation protein FLO11-like [Cucumis melo var. makuwa]6.8e-8898.79Show/hide
Query:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
        MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
Subjt:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL

Query:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMR
        EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEH  R
Subjt:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMR

KAA0059225.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.0e-7181.03Show/hide
Query:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
        MVANVCYTSLLEPTTVSA L DEHWIL +QEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKAR VAQGYSQIEGLDFGETFAPVARL
Subjt:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL

Query:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNK
        EAIRLLLSYACFWRFKLFQMDVKS FLNGYL EEVYVAQPKG++   + E     L K L + ++ +P   Y +
Subjt:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNK

KAA0059939.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.8e-6579.17Show/hide
Query:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
        MVANVCYTS LEPT VSA L DEHWIL MQEELLQFERNQ+WELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKAR VAQ Y QIEGLDFGETF PVARL
Subjt:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL

Query:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSP
        E IRLLLSYA F RFKLFQMDVKS FLNGYLSEEVYVAQPKG++   + +     L K L +G++ +P
Subjt:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSP

TYK07239.1 flocculation protein FLO11-like [Cucumis melo var. makuwa]6.8e-8898.79Show/hide
Query:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
        MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
Subjt:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL

Query:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMR
        EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEH  R
Subjt:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMR

TrEMBL top hitse value%identityAlignment
A0A5A7SWP6 Gag-pol polyprotein1.6e-6372.41Show/hide
Query:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
        MVANV YTS +EPTTV+A L DEHWILA+QEELLQFERNQVW LVPKPP+ NIIGTKWIFKNK DE+GR+IRNK R VAQGYSQI+GLDFGETFAP ARL
Subjt:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL

Query:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNK
        EAIRL+LS+ CF  FKLFQMDVKSVFLNGYLSEEVYVAQPKG++   + +     L K L +G++ +P   Y +
Subjt:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNK

A0A5A7UWF9 Flocculation protein FLO11-like3.3e-8898.79Show/hide
Query:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
        MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
Subjt:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL

Query:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMR
        EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEH  R
Subjt:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMR

A0A5A7V046 Gag-pol polyprotein9.6e-7281.03Show/hide
Query:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
        MVANVCYTSLLEPTTVSA L DEHWIL +QEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKAR VAQGYSQIEGLDFGETFAPVARL
Subjt:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL

Query:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNK
        EAIRLLLSYACFWRFKLFQMDVKS FLNGYL EEVYVAQPKG++   + E     L K L + ++ +P   Y +
Subjt:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNK

A0A5A7V293 Gag-pol polyprotein1.3e-6579.17Show/hide
Query:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
        MVANVCYTS LEPT VSA L DEHWIL MQEELLQFERNQ+WELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKAR VAQ Y QIEGLDFGETF PVARL
Subjt:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL

Query:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSP
        E IRLLLSYA F RFKLFQMDVKS FLNGYLSEEVYVAQPKG++   + +     L K L +G++ +P
Subjt:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSP

A0A5D3CAA3 Flocculation protein FLO11-like3.3e-8898.79Show/hide
Query:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
        MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL
Subjt:  MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARL

Query:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMR
        EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEH  R
Subjt:  EAIRLLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMR

SwissProt top hitse value%identityAlignment
P04146 Copia protein4.0e-2243.22Show/hide
Query:  WILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQMDVKS
        W  A+  EL   + N  W +  +P   NI+ ++W+F  K +E G  IR KAR VA+G++Q   +D+ ETFAPVAR+ + R +LS    +  K+ QMDVK+
Subjt:  WILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQMDVKS

Query:  VFLNGYLSEEVYVAQPKG
         FLNG L EE+Y+  P+G
Subjt:  VFLNGYLSEEVYVAQPKG

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-942.3e-2238.1Show/hide
Query:  AMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQMDVKSVFL
        AMQEE+   ++N  ++LV  P     +  KW+FK K D + +++R KAR V +G+ Q +G+DF E F+PV ++ +IR +LS A     ++ Q+DVK+ FL
Subjt:  AMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYACFWRFKLFQMDVKSVFL

Query:  NGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNK
        +G L EE+Y+ QP+G+ ++   +     LNK L +G++ +P   Y K
Subjt:  NGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNK

P92520 Uncharacterized mitochondrial protein AtMg008202.0e-1844.17Show/hide
Query:  EPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYA-
        EP +V   L D  W  AMQEEL    RN+ W LVP P   NI+G KW+FK K   +G + R KAR VA+G+ Q EG+ F ET++PV R   IR +L+ A 
Subjt:  EPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYA-

Query:  -------CFWRFKL-FQMDV
                 W FK+ F M +
Subjt:  -------CFWRFKL-FQMDV

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE15.0e-2539.51Show/hide
Query:  EPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPP-YANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYA
        EP T    L DE W  AM  E+     N  W+LVP PP +  I+G +WIF  K + +G + R KAR VA+GY+Q  GLD+ ETF+PV +  +IR++L  A
Subjt:  EPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPP-YANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYA

Query:  CFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCY
            + + Q+DV + FL G L+++VY++QP G+I   +       L K L +G++ +P   Y
Subjt:  CFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.2e-2441.79Show/hide
Query:  EPTTVSATLFDEHWILAMQEELLQFERNQVWELV-PKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYA
        EP T    + D+ W  AM  E+     N  W+LV P PP   I+G +WIF  K + +G + R KAR VA+GY+Q  GLD+ ETF+PV +  +IR++L  A
Subjt:  EPTTVSATLFDEHWILAMQEELLQFERNQVWELV-PKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYA

Query:  CFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWI
            + + Q+DV + FL G L++EVY++QP G++
Subjt:  CFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 87.1e-2740.29Show/hide
Query:  VCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIR
        VC     EP+T +       W  AM +E+   E    WE+   PP    IG KW++K K + +G + R KAR VA+GY+Q EG+DF ETF+PV +L +++
Subjt:  VCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIR

Query:  LLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGW
        L+L+ +  + F L Q+D+ + FLNG L EE+Y+  P G+
Subjt:  LLLSYACFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGW

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)1.4e-1944.17Show/hide
Query:  EPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYA-
        EP +V   L D  W  AMQEEL    RN+ W LVP P   NI+G KW+FK K   +G + R KAR VA+G+ Q EG+ F ET++PV R   IR +L+ A 
Subjt:  EPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYA-

Query:  -------CFWRFKL-FQMDV
                 W FK+ F M +
Subjt:  -------CFWRFKL-FQMDV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCTAATGTGTGCTACACATCTTTACTAGAACCAACCACAGTCTCTGCAACACTTTTCGATGAACACTGGATCTTGGCTATGCAGGAAGAGCTACTACAGTTTGA
AAGAAACCAAGTATGGGAGTTAGTGCCAAAGCCACCTTATGCTAACATAATTGGTACTAAATGGATCTTTAAGAACAAAACAGATGAAGAAGGTAGAGTTATCCGTAATA
AAGCTAGAAGGGTTGCTCAAGGGTATTCTCAAATAGAAGGACTGGACTTTGGAGAAACATTTGCCCCGGTTGCCAGATTAGAAGCCATCCGACTACTGCTAAGCTACGCA
TGCTTCTGGAGGTTCAAATTGTTCCAAATGGATGTAAAGAGTGTGTTCCTAAATGGGTACTTATCTGAGGAAGTGTATGTGGCACAACCAAAAGGATGGATCATGTCTAC
AAACTTCGAAAGGCAATCTATGGACTTAAACAAGCTCCTAGAGCATGGTATGAGAGACTCTCCACTTACCTGTTACAACAAGGATATCAAAGGGGTAGTGCAGATCAAAC
TATGTTTATATACCGTCAAGACACTGACTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCTAATGTGTGCTACACATCTTTACTAGAACCAACCACAGTCTCTGCAACACTTTTCGATGAACACTGGATCTTGGCTATGCAGGAAGAGCTACTACAGTTTGA
AAGAAACCAAGTATGGGAGTTAGTGCCAAAGCCACCTTATGCTAACATAATTGGTACTAAATGGATCTTTAAGAACAAAACAGATGAAGAAGGTAGAGTTATCCGTAATA
AAGCTAGAAGGGTTGCTCAAGGGTATTCTCAAATAGAAGGACTGGACTTTGGAGAAACATTTGCCCCGGTTGCCAGATTAGAAGCCATCCGACTACTGCTAAGCTACGCA
TGCTTCTGGAGGTTCAAATTGTTCCAAATGGATGTAAAGAGTGTGTTCCTAAATGGGTACTTATCTGAGGAAGTGTATGTGGCACAACCAAAAGGATGGATCATGTCTAC
AAACTTCGAAAGGCAATCTATGGACTTAAACAAGCTCCTAGAGCATGGTATGAGAGACTCTCCACTTACCTGTTACAACAAGGATATCAAAGGGGTAGTGCAGATCAAAC
TATGTTTATATACCGTCAAGACACTGACTTTTTAA
Protein sequenceShow/hide protein sequence
MVANVCYTSLLEPTTVSATLFDEHWILAMQEELLQFERNQVWELVPKPPYANIIGTKWIFKNKTDEEGRVIRNKARRVAQGYSQIEGLDFGETFAPVARLEAIRLLLSYA
CFWRFKLFQMDVKSVFLNGYLSEEVYVAQPKGWIMSTNFERQSMDLNKLLEHGMRDSPLTCYNKDIKGVVQIKLCLYTVKTLTF