CuGenDBv2

Gene ID	Cmc04g0101701
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr04:18122576..18123289
RNA-Seq Expression	Cmc04g0101701
Synteny	Cmc04g0101701
Gene Ontology terms	GO:0006468 - protein phosphorylation (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domains	IPR025724 - GAG-pre-integrase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN74303.1 hypothetical protein VITISV_032980 [Vitis vinifera]

1.5e-92

67.36

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Query:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD
        M CH N+ T  N+WY+D GCSNHMCGDK AF +LDE+FR +V FGDNS V V+GKG V I +K  S   IS+V FVPDLKT L SV +L EKGYE+ +KD
Subjt:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD

Query:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW
        G+CRIQD ++GLIAQVNM  NRMFPLYL NTT +CFS KL D  WLWHFRYGHLNFGGLKTL+QKN  TGLP I   +++CEECVV KQH+  FP GKSW
Subjt:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW

Query:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYSQKT
        R  + LELVHSD+C  INP SNGGKRY ITF+ DYS KT
Subjt:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYSQKT

DAD22982.1 TPA_asm: hypothetical protein HUJ06_024445 [Nelumbo nucifera]

4.5e-102

75.42

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Query:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD
        MVCHV E T +N+WYLD GCSNHMCGDK AF  LDESFR+ VKFGDNS V V+GKGRVTIQTKG+S+  IS+VLFVP+LKT L S+ +L EKGYE+S+KD
Subjt:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD

Query:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW
        G+CRIQD ++GLIAQVNMIANRMF LYL N THSCFS KLKD +WLWHFRYGHLNFGGLKTL+QKN  TGLPQI   +EVCEECVVSKQH++ FP GKSW
Subjt:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW

Query:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYS
        RAK+ LELVHS+LC  I+P SNGGKRYIITF+DDY+
Subjt:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYS

KAA0058510.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.7e-101

98.4

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Query:  MCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKDGICRIQDIEMGLIAQVNMIANRM
        MCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKDGICRIQDIEMGLIAQVNMIANRM
Subjt:  MCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKDGICRIQDIEMGLIAQVNMIANRM

Query:  FPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKNTGLPQIEVSAEVCEECVVSKQHQDPFPTGKSWRAKRPLELVHSD
        FPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKNTGLPQIEVSAEVCEECVVSKQHQDPFPTGKSWRAKRPLEL  S+
Subjt:  FPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKNTGLPQIEVSAEVCEECVVSKQHQDPFPTGKSWRAKRPLELVHSD

KAF7132250.1 hypothetical protein RHSIM_Rhsim09G0033700 [Rhododendron simsii]

3.0e-93

73.33

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Query:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD
        MVCHV E T QNMWYLD GCSNHMCGDKK F  LDESF NTVKFGDNS V V+GKG VTIQ KGN THTIS+VLFVPDLKT L SV +L EKGYE+S+K 
Subjt:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD

Query:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW
        G+C+IQD ++GLIAQVNM ANRMFPL+L NT HSCFS K++DV+WLWHFRYGHLNFGGLKTL+QKN   GLPQI   + VCEECVVSKQ ++ FP G SW
Subjt:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW

Query:  RAKRPLELVHSDLCSLINPFSNGGK
        RAK+ L LVHSD+C  I P SNG K
Subjt:  RAKRPLELVHSDLCSLINPFSNGGK

RVW92024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

5.4e-95

68.2

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Query:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD
        M CH N+ T  N+WY+D GCSNHMCGDK AF +LDE+FRN+V FGDNS V V+GKG V I +K  S   IS+V FVPDLKT L SV +L EKGYE+ +KD
Subjt:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD

Query:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW
        G+CRIQD ++GLIAQVNM  NRMFPLYL NTT +CFS KL D  WLWHFRYGHLNFGGLKTL+QKN  TGLP I+  +++CEECVV KQH+  FP GKSW
Subjt:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW

Query:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYSQKT
        RA + LELVHSD+C  INP SNGGK Y ITF+DDYS+KT
Subjt:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYSQKT

TrEMBL top hits

e value

%identity

Alignment

A0A438I5N6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.6e-95

68.2

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Query:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD
        M CH N+ T  N+WY+D GCSNHMCGDK AF +LDE+FRN+V FGDNS V V+GKG V I +K  S   IS+V FVPDLKT L SV +L EKGYE+ +KD
Subjt:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD

Query:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW
        G+CRIQD ++GLIAQVNM  NRMFPLYL NTT +CFS KL D  WLWHFRYGHLNFGGLKTL+QKN  TGLP I+  +++CEECVV KQH+  FP GKSW
Subjt:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW

Query:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYSQKT
        RA + LELVHSD+C  INP SNGGK Y ITF+DDYS+KT
Subjt:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYSQKT

A0A438I7U4 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.6e-87

67.71

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Query:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD
        M CH N+ T  N+WY+D GCSNHMCGDK AF +LDE+FRN+V FGDNS V V+GKG V I +K  S   IS+V FVPDLKT L SV +L EKGYE+ +KD
Subjt:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD

Query:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW
        G+CRIQD ++GLIAQVNM  NRMFPLYL NTT +CFS KL D  WLWHFRYGHLNFGGLKTL+QKN  TGLP I+  +++CEECVV KQH+  FP GKSW
Subjt:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW

Query:  RAKRPLELVHSDLCSLINPFSNG
        RA + LELVHSD+C  INP SNG
Subjt:  RAKRPLELVHSDLCSLINPFSNG

A0A5D3CA86 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.4e-102

98.4

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Query:  MCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKDGICRIQDIEMGLIAQVNMIANRM
        MCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKDGICRIQDIEMGLIAQVNMIANRM
Subjt:  MCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKDGICRIQDIEMGLIAQVNMIANRM

Query:  FPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKNTGLPQIEVSAEVCEECVVSKQHQDPFPTGKSWRAKRPLELVHSD
        FPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKNTGLPQIEVSAEVCEECVVSKQHQDPFPTGKSWRAKRPLEL  S+
Subjt:  FPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKNTGLPQIEVSAEVCEECVVSKQHQDPFPTGKSWRAKRPLELVHSD

A5ALW9 Uncharacterized protein

1.9e-90

65.69

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Query:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD
        M CH N+ T  N+WY+D  CSNHMCGDK AF +LDE+FRN+V FGDNS V V+GKG V I +K  S   IS+V FVPDLKT L SV +L EKGYE+ +KD
Subjt:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD

Query:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW
        G+CRIQD ++GLIAQVNM  NRMFPLYL NTT +CFS+KL D  WLWHFRYGHLNF  LKTL+ KN  TGLP I+  +++CEECV  KQH+  FP GKSW
Subjt:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW

Query:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYSQKT
        R  + LELVHSD+C  INP SNGGKRY ITF+ DYS KT
Subjt:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYSQKT

A5B902 Uncharacterized protein

7.1e-93

67.36

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Query:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD
        M CH N+ T  N+WY+D GCSNHMCGDK AF +LDE+FR +V FGDNS V V+GKG V I +K  S   IS+V FVPDLKT L SV +L EKGYE+ +KD
Subjt:  MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKD

Query:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW
        G+CRIQD ++GLIAQVNM  NRMFPLYL NTT +CFS KL D  WLWHFRYGHLNFGGLKTL+QKN  TGLP I   +++CEECVV KQH+  FP GKSW
Subjt:  GICRIQDIEMGLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN--TGLPQIEVSAEVCEECVVSKQHQDPFPTGKSW

Query:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYSQKT
        R  + LELVHSD+C  INP SNGGKRY ITF+ DYS KT
Subjt:  RAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYSQKT

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

4.2e-18

28.16

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Query:  MVCHVNEATQQNM--WYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSV
        MV  VN  +  +   + LD G S+H+  D+  + +  E               +    R  ++ + +   T+  VLF  +    L SV +L E G  +  
Subjt:  MVCHVNEATQQNM--WYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSV

Query:  KDGICRIQDIEMGLIAQVNMIAN---RMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN-----TGLPQIEVSAEVCEECVVSKQHQD
              I    + ++    M+ N     F  Y  N  H       K+   LWH R+GH++ G L  +K+KN     + L  +E+S E+CE C+  KQ + 
Subjt:  KDGICRIQDIEMGLIAQVNMIAN---RMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKN-----TGLPQIEVSAEVCEECVVSKQHQD

Query:  PFPTGK-SWRAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYS
        PF   K     KRPL +VHSD+C  I P +   K Y + FVD ++
Subjt:  PFPTGK-SWRAKRPLELVHSDLCSLINPFSNGGKRYIITFVDDYS

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.4e-18

27.88

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Query:  QNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKDGICRIQDIEM
        ++ W +D   S+H    +  F         TVK G+ S   + G G + I+T    T  +  V  VPDL+  L S   L   GYE    +   R+   + 
Subjt:  QNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKDGICRIQDIEM

Query:  GLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKNTGLPQIEVSAEVCEECVVSKQHQDPFPTGKSWRAKRPLELVHSD
         L+    +    ++    +       + + +    LWH R GH++  GL+ L +K+        + + C+ C+  KQH+  F T  S R    L+LV+SD
Subjt:  GLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKNTGLPQIEVSAEVCEECVVSKQHQDPFPTGKSWRAKRPLELVHSD

Query:  LCSLINPFSNGGKRYIITFVDDYSQK
        +C  +   S GG +Y +TF+DD S+K
Subjt:  LCSLINPFSNGGKRYIITFVDDYSQK

Arabidopsis top hits

e value

%identity

Alignment

AT3G21000.1 Gag-Pol-related retrotransposon family protein

1.2e-07

34.02

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Query:  NMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSV-KDGICRIQD
        ++W +      +M    K F  LD +F+ TV   D +++LV GKG V I+ K     TI +V+FVP L   + S  K++ K Y +S    G C + D
Subjt:  NMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSV-KDGICRIQD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTGTGCCATGTAAATGAAGCAACTCAACAAAACATGTGGTATTTAGATATAGGATGCAGCAATCACATGTGTGGAGACAAGAAGGCTTTTTTCGAACTTGATGAGTC
ATTCCGCAATACTGTTAAATTTGGTGATAACTCCATCGTTTTGGTCTTGGGAAAAGGACGGGTGACTATCCAAACCAAAGGGAACTCTACCCACACCATTTCTAGTGTTC
TTTTTGTTCCAGATTTAAAGACCAAACTTTTCAGTGTGAGCAAGTTGCTAGAAAAAGGGTATGAATTATCTGTTAAAGATGGAATCTGTAGAATTCAAGATATAGAGATG
GGTTTAATTGCTCAAGTGAATATGATAGCAAACCGAATGTTCCCACTTTATCTACAAAACACAACTCATTCTTGCTTCTCAATGAAATTGAAGGATGTCTCTTGGCTATG
GCATTTTCGCTATGGTCACTTGAACTTTGGTGGATTGAAAACTCTAAAGCAGAAAAATACCGGGCTTCCTCAAATTGAAGTTTCTGCTGAAGTTTGTGAAGAGTGTGTTG
TCAGCAAGCAACATCAAGATCCTTTTCCAACAGGAAAGTCATGGAGAGCAAAGAGACCATTAGAGTTGGTGCATTCAGATTTGTGCAGCCTGATAAATCCCTTTTCAAAT
GGAGGAAAACGATATATAATCACCTTCGTTGATGATTATAGTCAGAAAACTTAG

mRNA sequence

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Protein sequence

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MVCHVNEATQQNMWYLDIGCSNHMCGDKKAFFELDESFRNTVKFGDNSIVLVLGKGRVTIQTKGNSTHTISSVLFVPDLKTKLFSVSKLLEKGYELSVKDGICRIQDIEM
GLIAQVNMIANRMFPLYLQNTTHSCFSMKLKDVSWLWHFRYGHLNFGGLKTLKQKNTGLPQIEVSAEVCEECVVSKQHQDPFPTGKSWRAKRPLELVHSDLCSLINPFSN
GGKRYIITFVDDYSQKT

Cmc04g0101701 (gene) of Melon (Charmono) v1.1 genome