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Cmc04g0101921 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0101921
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
Genome locationCMiso1.1chr04:18432700..18433938
RNA-Seq ExpressionCmc04g0101921
SyntenyCmc04g0101921
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051415.1 retrotransposon protein [Cucumis melo var. makuwa]9.2e-0464.86Show/hide
Query:  GRAETFANIESNDPSEYERFQPHDGNNMDIPTINNQG
        GRAETF ++ESN PS Y+ F PHDGN+M I T+ NQG
Subjt:  GRAETFANIESNDPSEYERFQPHDGNNMDIPTINNQG

KAA0054019.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-0450.94Show/hide
Query:  ETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTI
        ETF +I SNDPS YE FQP DGN+M+IPTI +QG    +   +L  +VE  ++
Subjt:  ETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTI

KAA0056139.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-0959.26Show/hide
Query:  AETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTI
        AETFA+++SNDPS YE FQ HD N+++IPT+ NQG    +RIY  +DLVEHP +
Subjt:  AETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTI

KAA0065627.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.9e-2698.31Show/hide
Query:  MEGRAETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTIE
        MEGRAETFANI SNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTIE
Subjt:  MEGRAETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTIE

TYK14144.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-0961.54Show/hide
Query:  AETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHP
        AETFA+++SNDP+ YE FQ HD N+++IPT+ NQG    KRIY  +DLVEHP
Subjt:  AETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHP

TrEMBL top hitse value%identityAlignment
A0A5A7URM1 Retrotransposon protein7.1e-1059.26Show/hide
Query:  AETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTI
        AETFA+++SNDPS YE FQ HD N+++IPT+ NQG    +RIY  +DLVEHP +
Subjt:  AETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTI

A0A5D3C6Z6 Putative nuclease HARBI11.4e-2698.31Show/hide
Query:  MEGRAETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTIE
        MEGRAETFANI SNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTIE
Subjt:  MEGRAETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTIE

A0A5D3CSY3 Retrotransposon protein1.2e-0961.54Show/hide
Query:  AETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHP
        AETFA+++SNDP+ YE FQ HD N+++IPT+ NQG    KRIY  +DLVEHP
Subjt:  AETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHP

A0A5D3DB07 Retrotransposon protein1.5e-0450.94Show/hide
Query:  ETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTI
        ETF +I SNDPS YE FQP DGN+M+IPTI +QG    +   +L  +VE  ++
Subjt:  ETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTI

A0A5D3DG43 Retrotransposon protein4.5e-0464.86Show/hide
Query:  GRAETFANIESNDPSEYERFQPHDGNNMDIPTINNQG
        GRAETF ++ESN PS Y+ F PHDGN+M I T+ NQG
Subjt:  GRAETFANIESNDPSEYERFQPHDGNNMDIPTINNQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGGACGTGCGGAAACATTTGCCAACATCGAGTCGAATGACCCTAGCGAGTATGAGAGATTTCAACCGCATGATGGAAACAATATGGACATCCCTACTATAAATAA
CCAGGGATTAACATGTTGCAAGAGGATATACGAGCTCTATGATCTGGTCGAGCATCCGACGATAGAATGA
mRNA sequenceShow/hide mRNA sequence
GTCAATAGGCTATCCTTCGTGGCAAGTCATACTACCCTATCCAAGTTCAACGTTGCACGATTCTAACATGTTTCCTACTGCACAATCTGATACATAGGGAGATGACCAAT
GTCGATGATTTGGAGGACATCGACAAGGGAGACTCGACCTACACGATGACCGCAGGTGACGACATTCACTACACTAAGACCTCAAACAAATGGACTCAGTGGTAGGATGA
ATTAGCCTTGGAGATGTTCAATCAATGGCATATGGCAAGTTCGTCACGTGCATCGAACCATGTGTGGACAAAGGAGGAGGCCACACTCGTGGATTGCTTGGTGGAGTTAG
TATCTACTGGTGAATGAAAGTCAGACAATGACACGTTTAGACTAGATTACCTGGCACAACTTGTTCGAATGATGGCGGCGAAGTTGTCGAGGTGCAATGTCTAAGCTACT
ACTGTTATTAACTGTCGTATAAAGATGTTGAAGCGAACATTCCAAGCAATAGCAAAAATGTATGACCCATCATGCAGTAAATTTGAATTTAATGATGAGGCTAAGTGCAT
AATTTGAGAAGGACCTGTTCGACAGTTGGGTTAAGACACATCCTATAGCAAAGGATCTCCTCAACAAGCCTTTTCTCTACTACGACCAACTGTCCTATGTGTTTGGGAAA
AATAGGGCAATGGAAGGACGTGCGGAAACATTTGCCAACATCGAGTCGAATGACCCTAGCGAGTATGAGAGATTTCAACCGCATGATGGAAACAATATGGACATCCCTAC
TATAAATAACCAGGGATTAACATGTTGCAAGAGGATATACGAGCTCTATGATCTGGTCGAGCATCCGACGATAGAATGAGATCAAGTGGATCAAAAAGCATCTGACGTCC
ATACGATAGAACGGGATTAATGGAAGGCAGCATGCAAAAACCGTTAACCTCATCCATGACG
Protein sequenceShow/hide protein sequence
MEGRAETFANIESNDPSEYERFQPHDGNNMDIPTINNQGLTCCKRIYELYDLVEHPTIE