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Cmc04g0101951 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0101951
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr04:18506351..18506656
RNA-Seq ExpressionCmc04g0101951
SyntenyCmc04g0101951
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026067.1 gag/pol protein [Cucumis melo var. makuwa]8.8e-4794.06Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        MRHIPYASAVGSLMY MLCTRPDICYA+GIVSRYQSNP LAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTD+DSRKSTLGS+FTLNGG V
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Query:  V
        V
Subjt:  V

KAA0046416.1 gag/pol protein [Cucumis melo var. makuwa]7.5e-4693.07Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        MRHIPYASAVGSLMY MLCTRPDICYAVGIVSRYQSNP LAHWT VKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTD+DSRKST GS+FTLNGG V
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Query:  V
        V
Subjt:  V

KAA0054309.1 gag/pol protein [Cucumis melo var. makuwa]7.5e-4693.07Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        MRHIPYASAVGSLMY MLCTRPDICYAVGIVSRYQSNP LAHWT VKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTD+DSRKST GS+FTLNGG V
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Query:  V
        V
Subjt:  V

KAA0055498.1 gag-pol fusion protein [Cucumis melo var. makuwa]3.4e-4693.07Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        MRHIPYASAVGSLMY+MLCTRPDICYAVGIVSRYQSNP LAHWT VKTILKYLRRTRDYMLVYG KDLILTGYTDSDFQTD+DSRKSTLGS+FTLNGG V
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Query:  V
        V
Subjt:  V

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]3.7e-4592.08Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        MRHIPYASAVGSLMY MLCTRPDICYAVGIVSRYQSNP LAHWT VKTILKYLRRTRDY LVYGSKDLILTGYTDSDFQTD+DSRKST GS+FTLNGG V
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Query:  V
        V
Subjt:  V

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein1.8e-4592.08Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        MRHIPYASAVGSLMY MLCTRPDICYAVGIVSRYQSNP LAHWT VKTILKYLRRTRDY LVYGSKDLILTGYTDSDFQTD+DSRKST GS+FTLNGG V
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Query:  V
        V
Subjt:  V

A0A5A7SMW0 Gag/pol protein4.3e-4794.06Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        MRHIPYASAVGSLMY MLCTRPDICYA+GIVSRYQSNP LAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTD+DSRKSTLGS+FTLNGG V
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Query:  V
        V
Subjt:  V

A0A5A7TWI0 Gag/pol protein3.6e-4693.07Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        MRHIPYASAVGSLMY MLCTRPDICYAVGIVSRYQSNP LAHWT VKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTD+DSRKST GS+FTLNGG V
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Query:  V
        V
Subjt:  V

A0A5A7UKD1 Gag-pol fusion protein1.6e-4693.07Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        MRHIPYASAVGSLMY+MLCTRPDICYAVGIVSRYQSNP LAHWT VKTILKYLRRTRDYMLVYG KDLILTGYTDSDFQTD+DSRKSTLGS+FTLNGG V
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Query:  V
        V
Subjt:  V

A0A5A7ULH1 Gag/pol protein3.6e-4693.07Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        MRHIPYASAVGSLMY MLCTRPDICYAVGIVSRYQSNP LAHWT VKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTD+DSRKST GS+FTLNGG V
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Query:  V
        V
Subjt:  V

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.9e-1343.16Show/hide
Query:  PYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLI----LTGYTDSDFQTDKDSRKSTLGSMFTL
        P  S +G LMY+MLCTRPD+  AV I+SRY S      W  +K +L+YL+ T D  L++  K+L     + GY DSD+   +  RKST G +F +
Subjt:  PYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLI----LTGYTDSDFQTDKDSRKSTLGSMFTL

P0CV72 Secreted RxLR effector protein 1617.3e-2045.54Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLI-LTGYTDSDFQTDKDSRKSTLGSMFTLNGGV
        M+++PY SAVG++MY+M+ TRPD+  AVG++S++ S+P   HW  +K +L+YL+ T+ Y L +       L GY+D+D+  D +SR+ST G +F LNGG 
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLI-LTGYTDSDFQTDKDSRKSTLGSMFTLNGGV

Query:  V
        V
Subjt:  V

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.9e-2656Show/hide
Query:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        M  +PY+SAVGSLMY M+CTRPDI +AVG+VSR+  NP   HW  VK IL+YLR T    L +G  D IL GYTD+D   D D+RKS+ G +FT +GG +
Subjt:  MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

P25600 Putative transposon Ty5-1 protein YCL074W3.8e-0838.14Show/hide
Query:  PYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGS-KDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        PY S VG L++     RPDI Y V ++SR+   PR  H  + + +L+YL  TR   L Y S   L LT Y D+      D   ST G +  L G  V
Subjt:  PYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGS-KDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.8e-0839.53Show/hide
Query:  YASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDY-MLVYGSKDLILTGYTDSDFQTDKDSRKSTLG
        Y   VGSL Y+   TRPD+ YAV  +S+Y   P   HW  +K +L+YL  T D+ + +     L L  Y+D+D+  D D   ST G
Subjt:  YASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDY-MLVYGSKDLILTGYTDSDFQTDKDSRKSTLG

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.2e-1037.5Show/hide
Query:  YASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSK-DLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV
        Y   +G LMY+ + TR DI +AV  +S++   PRLAH   V  IL Y++ T    L Y S+ ++ L  ++D+ FQ+ KD+R+ST G    L   ++
Subjt:  YASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSK-DLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVV

ATMG00240.1 Gag-Pol-related retrotransposon family protein1.8e-0535.9Show/hide
Query:  MYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVY-GSKDLILTGYTDSDFQTDKDSRKSTLG
        MY+ + TRPD+ +AV  +S++ S  R A    V  +L Y++ T    L Y  + DL L  + DSD+ +  D+R+S  G
Subjt:  MYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVY-GSKDLILTGYTDSDFQTDKDSRKSTLG

ATMG00810.1 DNA/RNA polymerases superfamily protein1.9e-0736.05Show/hide
Query:  YASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDY-MLVYGSKDLILTGYTDSDFQTDKDSRKSTLG
        + S VG+L Y+ L TRPDI YAV IV +    P LA +  +K +L+Y++ T  + + ++ +  L +  + DSD+     +R+ST G
Subjt:  YASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDY-MLVYGSKDLILTGYTDSDFQTDKDSRKSTLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGACATATCCCTTATGCATCAGCTGTTGGCAGTTTGATGTATATGATGTTATGTACTAGACCTGACATCTGTTATGCGGTGGGGATAGTCAGCAGATATCAATCTAA
TCCAAGATTAGCTCACTGGACTACCGTTAAAACTATCCTTAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACA
CAGACTCTGACTTTCAAACTGATAAAGATTCTAGGAAATCTACTTTAGGTTCAATGTTCACTCTTAACGGAGGAGTTGTAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGACATATCCCTTATGCATCAGCTGTTGGCAGTTTGATGTATATGATGTTATGTACTAGACCTGACATCTGTTATGCGGTGGGGATAGTCAGCAGATATCAATCTAA
TCCAAGATTAGCTCACTGGACTACCGTTAAAACTATCCTTAAGTATCTTAGGAGAACGAGGGACTACATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACA
CAGACTCTGACTTTCAAACTGATAAAGATTCTAGGAAATCTACTTTAGGTTCAATGTTCACTCTTAACGGAGGAGTTGTAGTTTAG
Protein sequenceShow/hide protein sequence
MRHIPYASAVGSLMYMMLCTRPDICYAVGIVSRYQSNPRLAHWTTVKTILKYLRRTRDYMLVYGSKDLILTGYTDSDFQTDKDSRKSTLGSMFTLNGGVVV