; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0102441 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0102441
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr04:19231007..19231897
RNA-Seq ExpressionCmc04g0102441
SyntenyCmc04g0102441
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031710.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.9e-15091.55Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        MIRT+FSCPIKTL  +NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGR ERKHR ILDSVR LLLSASCPEKFWGEAALTSVYTIN L SSVLQNISP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        FEKLYGT  NYSNLKTFGCACFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLRISRHV FWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
        F  SESPLGNELAQSAPTSATSDQSSISDGS EPTPDTPP RSTRVRE PIHLQDYHCFSTI+SLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

KAA0047306.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.7e-15291.89Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSC HTSQQNGR ERKHR ILDSVR LLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        FEKLYGTP NYSNLKTFGCACFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLR+SRH+TFWEHTMFSRLSSFHTSFSSPQ FFT+TSIDL
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
        F  SESPLGNELAQSAPTSATSDQSSISDGS EPTPDTPP RSTRVREPPIHLQDYH FSTI+SLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

KAA0050251.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.5e-15291.89Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGRVERKH  ILDSVR LLLSASCP+KFWGEAALTSVY+INRLPSSVLQNISP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        FEKLYGTP NYSNLKTFGCACFVLLHPHEHTKLEPR  L  FLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
        F  SESPLGNELAQSAPTSA SDQSSI D S EPTPDTPP RSTRVREPPIHLQDYHCFSTI+SLVE TSYQEAST+PLWQKAMNDELQALEKTHT
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

KAA0064888.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.1e-15291.89Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGR ERKHR ILDSVR LLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        FEKLYGTP NYSNLKTFG ACFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
        F  SESP+GNELAQSAPTSATS+QSSIS GS EPTPDTPP RSTRVREPPIHLQDYHCFSTI+SLVEPTSYQEAS NP+WQKAMNDELQALEKTHT
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

TYJ98155.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.4e-15392.23Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGRVERKH  ILDSVR LLLSASCP+KFWGEAALTSVY+INRLPSSVLQNISP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        FEKLYGTP NYSNLKTFGCACFVLLHPHEHTKLEPR  L  FLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
        F  SESPLGNELAQSAPTSA SDQSSI D S EPTPDTPP RSTRVREPPIHLQDYHCFSTI+SLVEPTSYQEAST+PLWQKAMNDELQALEKTHT
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

TrEMBL top hitse value%identityAlignment
A0A5A7SLT8 Retrovirus-related Pol polyprotein from transposon TNT 1-949.3e-15191.55Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        MIRT+FSCPIKTL  +NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGR ERKHR ILDSVR LLLSASCPEKFWGEAALTSVYTIN L SSVLQNISP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        FEKLYGT  NYSNLKTFGCACFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLRISRHV FWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
        F  SESPLGNELAQSAPTSATSDQSSISDGS EPTPDTPP RSTRVRE PIHLQDYHCFSTI+SLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

A0A5A7TZC4 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-15291.89Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSC HTSQQNGR ERKHR ILDSVR LLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        FEKLYGTP NYSNLKTFGCACFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLR+SRH+TFWEHTMFSRLSSFHTSFSSPQ FFT+TSIDL
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
        F  SESPLGNELAQSAPTSATSDQSSISDGS EPTPDTPP RSTRVREPPIHLQDYH FSTI+SLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

A0A5A7U9P9 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-15291.89Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGRVERKH  ILDSVR LLLSASCP+KFWGEAALTSVY+INRLPSSVLQNISP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        FEKLYGTP NYSNLKTFGCACFVLLHPHEHTKLEPR  L  FLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
        F  SESPLGNELAQSAPTSA SDQSSI D S EPTPDTPP RSTRVREPPIHLQDYHCFSTI+SLVE TSYQEAST+PLWQKAMNDELQALEKTHT
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

A0A5A7VBA1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.0e-15291.89Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGR ERKHR ILDSVR LLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        FEKLYGTP NYSNLKTFG ACFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
        F  SESP+GNELAQSAPTSATS+QSSIS GS EPTPDTPP RSTRVREPPIHLQDYHCFSTI+SLVEPTSYQEAS NP+WQKAMNDELQALEKTHT
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

A0A5D3BI36 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-15392.23Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGRVERKH  ILDSVR LLLSASCP+KFWGEAALTSVY+INRLPSSVLQNISP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        FEKLYGTP NYSNLKTFGCACFVLLHPHEHTKLEPR  L  FLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
        F  SESPLGNELAQSAPTSA SDQSSI D S EPTPDTPP RSTRVREPPIHLQDYHCFSTI+SLVEPTSYQEAST+PLWQKAMNDELQALEKTHT
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.7e-1631.52Show/hide
Query:  FSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNIS--PFEK
        F+  +  L  +N  EY  + +  F  ++G     + PHT Q NG  ER  R I +  R ++  A   + FWGEA LT+ Y INR+PS  L + S  P+E 
Subjt:  FSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNIS--PFEK

Query:  LYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMF-SRLSSFHTSF
         +       +L+ FG   +V +  ++  K + +     F+GY  E  GF  WD ++ +  ++R V   E  M  SR   F T F
Subjt:  LYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMF-SRLSSFHTSF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.2e-2229.67Show/hide
Query:  IKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPL
        +K L ++N  EY       + S  G   +++ P T Q NG  ER +R I++ VR +L  A  P+ FWGEA  T+ Y INR PS  L    P        +
Subjt:  IKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPL

Query:  NYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQP-FFTDTSIDLFLLSESPL
        +YS+LK FGC  F  +   + TKL+ +     F+GYG E  G+  WDP+  ++  SR V F E  + +         +   P F T  S      S    
Subjt:  NYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQP-FFTDTSIDLFLLSESPL

Query:  GNELAQSA--PTSATSDQSSISDGSSE---PTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLV----EPTSYQEASTNP---LWQKAMNDELQALEKTHT
         +E+++    P         + +G  E   PT     ++  R  E P  ++     ST   L+    EP S +E  ++P      KAM +E+++L+K  T
Subjt:  GNELAQSA--PTSATSDQSSISDGSSE---PTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLV----EPTSYQEASTNP---LWQKAMNDELQALEKTHT

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE16.2e-2732.38Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        ++  +F   I T  ++N  E+    L  + SQ G     S PHT + NG  ERKHR I+++   LL  AS P+ +W  A   +VY INRLP+ +LQ  SP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL
        F+KL+GT  NY  L+ FGCAC+  L P+   KL+ +     FLGY      + C    ++RL ISRHV F E+      S++  + S  Q    ++S   
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDL

Query:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQ
             SP    L    P       S     ++ P+  + P+R+++V    +   D    S+  S  EPT+ ++    P  Q
Subjt:  FLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQ

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.7e-2934.33Show/hide
Query:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP
        ++  +F   I TL ++N  E+   +L  +LSQ G     S PHT + NG  ERKHR I++    LL  AS P+ +W  A   +VY INRLP+ +LQ  SP
Subjt:  MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISP

Query:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQ--------PF
        F+KL+G P NY  LK FGCAC+  L P+   KLE +     F+GY      + C    + RL  SRHV F E       ++F  S S  Q        P 
Subjt:  FEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQ--------PF

Query:  FTDTSIDLFLLSESP-LGNELAQS-------APTSATSDQSS-------ISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTN
         T       +L   P LG  L  S       +P   T   SS        S  SSEPT   P +   +    P   Q+ +  S I++   P S    S N
Subjt:  FTDTSIDLFLLSESP-LGNELAQS-------APTSATSDQSS-------ISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCGCACCCAATTCTCTTGTCCCATCAAAACCCTTTGCACCAACAATGCCTTGGAGTATAAAGACTCCATTCTTCTATCTTTTCTCTCCCAACAGGGCAATCTTGT
TCAGCGCTCCTGCCCCCACACTTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGCCAAATTCTTGACTCAGTACGTGGCCTCCTTCTTTCTGCCTCATGCCCTGAGA
AATTTTGGGGTGAAGCAGCTCTTACATCTGTCTATACTATCAATCGTCTTCCTTCCTCCGTTCTTCAGAATATCTCTCCATTCGAAAAACTATATGGTACTCCTCTCAAC
TATTCTAATCTTAAAACCTTCGGTTGTGCTTGCTTTGTTCTTCTGCATCCTCATGAACACACTAAACTTGAACCACGTGTCCACCTCTATTATTTTCTTGGCTATGGCAC
AGAACATAAAGGTTTTCATTGCTGGGATCCCCTTTCTAATAGACTTCGTATATCTCGTCATGTCACATTTTGGGAGCACACTATGTTCTCTCGTTTGTCCTCCTTCCACA
CCTCCTTCTCTAGTCCTCAACCTTTCTTCACTGACACATCTATTGACCTTTTTCTTCTCTCCGAGTCCCCTCTTGGTAATGAGCTTGCTCAATCTGCACCTACTTCGGCA
ACCTCGGACCAATCATCCATCTCTGATGGTAGTTCTGAACCTACTCCAGACACCCCTCCTTATCGTTCTACTCGGGTAAGGGAACCTCCTATTCATCTCCAAGATTATCA
CTGTTTTTCCACTATTGTTTCCCTTGTTGAACCTACCTCTTATCAAGAGGCTAGTACTAACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGA
CGCATACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCGCACCCAATTCTCTTGTCCCATCAAAACCCTTTGCACCAACAATGCCTTGGAGTATAAAGACTCCATTCTTCTATCTTTTCTCTCCCAACAGGGCAATCTTGT
TCAGCGCTCCTGCCCCCACACTTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGCCAAATTCTTGACTCAGTACGTGGCCTCCTTCTTTCTGCCTCATGCCCTGAGA
AATTTTGGGGTGAAGCAGCTCTTACATCTGTCTATACTATCAATCGTCTTCCTTCCTCCGTTCTTCAGAATATCTCTCCATTCGAAAAACTATATGGTACTCCTCTCAAC
TATTCTAATCTTAAAACCTTCGGTTGTGCTTGCTTTGTTCTTCTGCATCCTCATGAACACACTAAACTTGAACCACGTGTCCACCTCTATTATTTTCTTGGCTATGGCAC
AGAACATAAAGGTTTTCATTGCTGGGATCCCCTTTCTAATAGACTTCGTATATCTCGTCATGTCACATTTTGGGAGCACACTATGTTCTCTCGTTTGTCCTCCTTCCACA
CCTCCTTCTCTAGTCCTCAACCTTTCTTCACTGACACATCTATTGACCTTTTTCTTCTCTCCGAGTCCCCTCTTGGTAATGAGCTTGCTCAATCTGCACCTACTTCGGCA
ACCTCGGACCAATCATCCATCTCTGATGGTAGTTCTGAACCTACTCCAGACACCCCTCCTTATCGTTCTACTCGGGTAAGGGAACCTCCTATTCATCTCCAAGATTATCA
CTGTTTTTCCACTATTGTTTCCCTTGTTGAACCTACCTCTTATCAAGAGGCTAGTACTAACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGA
CGCATACTTAA
Protein sequenceShow/hide protein sequence
MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLN
YSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSA
TSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT