CuGenDBv2

Gene ID	Cmc04g0103431
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Beta-galactosidase
Genome location	CMiso1.1chr04:20490515..20490895
RNA-Seq Expression	Cmc04g0103431
Synteny	Cmc04g0103431
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0005739 - mitochondrion (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0005525 - GTP binding (molecular function) GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031941.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.1e-62

92.86

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        MKALEKNRTWEICALPK HKTVGCKWVFSLKYKADG LDRHKARLVAKGFTQTYGIDYSETFSPVAKLN VRVLLSVAVNKDWPLYQLDV NAF NGDL+
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +EVYMSPPPGFEAQFGQ+VCKLQK+L
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.1e-62

92.86

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        MKALEKNRTWEICALPK HKTVGCKWVFSLKYKADG LDRHKARLVAKGFTQTYGIDYSETFSPVAKLN VRVLLSVAVNKDWPLYQLDV NAF NGDL+
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +EVYMSPPPGFEAQFGQ+VCKLQK+L
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

KAA0063166.1 Beta-galactosidase [Cucumis melo var. makuwa]

4.9e-63

93.65

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        MKALEKNRTWEICALPK HKTVGCKWVFSLKYKADG LDRHKARLVAKGFTQTYGIDYSETFSPVAKLN VRVLLSVAVNKDWPLYQLDV NAF NGDL+
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +EVYMSPPPGFEAQFGQQVCKLQK+L
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.1e-62

92.86

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        MKALEKNRTWEICALPK HKTVGCKWVFSLKYKADG LDRHKARLVAKGFTQTYGIDYSETFSPVAKLN VRVLLSVAVNKDWPLYQLDV NAF NGDL+
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +EVYMSPPPGFEAQFGQ+VCKLQK+L
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.1e-62

92.86

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        MKALEKNRTWEICALPK HKTVGCKWVFSLKYKADG LDRHKARLVAKGFTQTYGIDYSETFSPVAKLN VRVLLSVAVNKDWPLYQLDV NAF NGDL+
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +EVYMSPPPGFEAQFGQ+VCKLQK+L
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SM64 Beta-galactosidase

5.3e-63

92.86

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        MKALEKNRTWEICALPK HKTVGCKWVFSLKYKADG LDRHKARLVAKGFTQTYGIDYSETFSPVAKLN VRVLLSVAVNKDWPLYQLDV NAF NGDL+
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +EVYMSPPPGFEAQFGQ+VCKLQK+L
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

A0A5A7V9P8 Beta-galactosidase

2.4e-63

93.65

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        MKALEKNRTWEICALPK HKTVGCKWVFSLKYKADG LDRHKARLVAKGFTQTYGIDYSETFSPVAKLN VRVLLSVAVNKDWPLYQLDV NAF NGDL+
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +EVYMSPPPGFEAQFGQQVCKLQK+L
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

A0A5A7VLQ7 Beta-galactosidase

5.3e-63

92.86

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        MKALEKNRTWEICALPK HKTVGCKWVFSLKYKADG LDRHKARLVAKGFTQTYGIDYSETFSPVAKLN VRVLLSVAVNKDWPLYQLDV NAF NGDL+
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +EVYMSPPPGFEAQFGQ+VCKLQK+L
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

A0A5D3BJK7 Beta-galactosidase

5.3e-63

92.86

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        MKALEKNRTWEICALPK HKTVGCKWVFSLKYKADG LDRHKARLVAKGFTQTYGIDYSETFSPVAKLN VRVLLSVAVNKDWPLYQLDV NAF NGDL+
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +EVYMSPPPGFEAQFGQ+VCKLQK+L
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

A0A5D3C4T4 Beta-galactosidase

5.3e-63

92.86

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        MKALEKNRTWEICALPK HKTVGCKWVFSLKYKADG LDRHKARLVAKGFTQTYGIDYSETFSPVAKLN VRVLLSVAVNKDWPLYQLDV NAF NGDL+
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +EVYMSPPPGFEAQFGQ+VCKLQK+L
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.2e-24

44.44

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        + A + N TW I   P+    V  +WVFS+KY   G   R+KARLVA+GFTQ Y IDY ETF+PVA+++  R +LS+ +  +  ++Q+DV  AF NG L 
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFEAQFGQQVCKLQKTL
        +E+YM  P G        VCKL K +
Subjt:  KEVYMSPPPGFEAQFGQQVCKLQKTL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.8e-28

50.39

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI
        M++L+KN T+++  LPK  + + CKWVF LK   D  L R+KARLV KGF Q  GID+ E FSPV K+  +R +LS+A + D  + QLDV  AF +GDL 
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLI

Query:  KEVYMSPPPGFE-AQFGQQVCKLQKTL
        +E+YM  P GFE A     VCKL K+L
Subjt:  KEVYMSPPPGFE-AQFGQQVCKLQKTL

P92520 Uncharacterized mitochondrial protein AtMg00820

1.4e-15

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVA
        + AL +N+TW +   P     +GCKWVF  K  +DG LDR KARLVAKGF Q  GI + ET+SPV +   +R +L+VA
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

9.4e-33

54.1

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Query:  NRTWEICALPKRHKT-VGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLIKEVYM
        N TW++   P  H T VGC+W+F+ KY +DG L+R+KARLVAKG+ Q  G+DY+ETFSPV K   +R++L VAV++ WP+ QLDV NAF  G L  +VYM
Subjt:  NRTWEICALPKRHKT-VGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLIKEVYM

Query:  SPPPGF-EAQFGQQVCKLQKTL
        S PPGF +      VCKL+K L
Subjt:  SPPPGF-EAQFGQQVCKLQKTL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

6.7e-31

51.64

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Query:  NRTWEICALPKRHKT-VGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLIKEVYM
        N TW++   P    T VGC+W+F+ K+ +DG L+R+KARLVAKG+ Q  G+DY+ETFSPV K   +R++L VAV++ WP+ QLDV NAF  G L  EVYM
Subjt:  NRTWEICALPKRHKT-VGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLIKEVYM

Query:  SPPPGF-EAQFGQQVCKLQKTL
        S PPGF +      VC+L+K +
Subjt:  SPPPGF-EAQFGQQVCKLQKTL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

3.2e-36

51.16

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Query:  ALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLIKE
        A+E   TWEIC LP   K +GCKWV+ +KY +DG ++R+KARLVAKG+TQ  GID+ ETFSPV KL  V+++L+++   ++ L+QLD+ NAF NGDL +E
Subjt:  ALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLIKE

Query:  VYMSPPPGFEAQFGQQ-----VCKLQKTL
        +YM  PPG+ A+ G       VC L+K++
Subjt:  VYMSPPPGFEAQFGQQ-----VCKLQKTL

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

9.7e-17

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Query:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVA
        + AL +N+TW +   P     +GCKWVF  K  +DG LDR KARLVAKGF Q  GI + ET+SPV +   +R +L+VA
Subjt:  MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVA

Sequences

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CDS sequence

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ATGAAGGCTTTGGAAAAGAATAGAACTTGGGAGATCTGTGCTTTACCCAAGAGACATAAAACTGTAGGATGCAAATGGGTATTCTCTCTCAAATACAAAGCAGATGGTAT
GCTTGATAGACACAAAGCAAGGTTAGTTGCAAAGGGATTCACTCAAACCTATGGTATTGACTATTCAGAAACTTTTTCTCCAGTTGCTAAATTGAATATTGTTAGAGTCC
TGCTATCTGTTGCTGTGAACAAAGATTGGCCTCTATACCAGCTGGATGTTATGAATGCTTTTTCGAATGGAGACCTTATTAAGGAAGTCTACATGAGCCCCCCGCCAGGA
TTTGAAGCCCAATTTGGTCAGCAGGTGTGTAAACTCCAAAAAACCCTATAG

mRNA sequence

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Protein sequence

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MKALEKNRTWEICALPKRHKTVGCKWVFSLKYKADGMLDRHKARLVAKGFTQTYGIDYSETFSPVAKLNIVRVLLSVAVNKDWPLYQLDVMNAFSNGDLIKEVYMSPPPG
FEAQFGQQVCKLQKTL

Cmc04g0103431 (gene) of Melon (Charmono) v1.1 genome