CuGenDBv2

Gene ID	Cmc04g0103771
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	50S ribosomal protein L35
Genome location	CMiso1.1chr04:20985027..20996438
RNA-Seq Expression	Cmc04g0103771
Synteny	Cmc04g0103771
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:1990904 - ribonucleoprotein complex (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR021137 - Ribosomal protein L35 IPR037229 - Ribosomal protein L35 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004144409.1 uncharacterized protein LOC101219338 [Cucumis sativus]

7.9e-77

95.24

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Query:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLR CAKLRSAAAKPSQI+ SVSSTRRIFHSAPSLYQPLHFS NNLNSRSLFNA  QTHSPLAAYQCIRSS LPLSVVQVRHVSSRDRRNKRKPTTPATS
Subjt:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN
        KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC+
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN

XP_008460439.1 PREDICTED: uncharacterized protein LOC103499252 [Cucumis melo]

4.3e-83

100

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Query:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKL
        MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKL
Subjt:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKL

Query:  KKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN
        KKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN
Subjt:  KKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN

XP_022156090.1 uncharacterized protein LOC111023059 [Momordica charantia]

1.2e-69

85.63

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Query:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLRWCAKLRSAAAKPSQ+V SVSSTRRIFHS+PSLYQPLHF+PNNL+SRS+FNA  QTHS LAAYQCIRSS LPLSVVQVRHVSSR+RR +RKP TP TS
Subjt:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+MKDGSIKRR EGKRHNAH KSK+SKR+LR+PA VPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

XP_023532529.1 uncharacterized protein LOC111794661 [Cucurbita pepo subsp. pepo]

1.9e-67

83.83

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Query:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLRWC+KLRSAAAKPSQIV SVSSTRRIFHSAPSLYQPLHFSPNNL+SRSL NA  QTHS LAAYQCIRSSL PL  VQVRHVSSR+R+ +RKP TP TS
Subjt:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+ KDGSIKRR EGKRHNAH KSK++KR+LR+PA VPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

XP_038887770.1 uncharacterized protein LOC120077803 [Benincasa hispida]

1.6e-74

92.22

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Query:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLRWCAKLRSAAAKPSQIV S SSTRRIFHS+ SLYQPLHFSPNNLNSRSLFNA  QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRR KRK TTP TS
Subjt:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTKLK YSSYKSRFW+MKDGSIKRRMEGKRHNAHSKSKRSKR+LR+PAIVPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBT5 Uncharacterized protein

3.8e-77

95.24

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Query:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLR CAKLRSAAAKPSQI+ SVSSTRRIFHSAPSLYQPLHFS NNLNSRSLFNA  QTHSPLAAYQCIRSS LPLSVVQVRHVSSRDRRNKRKPTTPATS
Subjt:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN
        KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC+
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN

A0A1S3CDR4 uncharacterized protein LOC103499252

2.1e-83

100

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Query:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKL
        MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKL
Subjt:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKL

Query:  KKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN
        KKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN
Subjt:  KKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN

A0A5A7VRB4 50S ribosomal protein L35

2.7e-67

100

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Query:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKL
        MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKL
Subjt:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKL

Query:  KKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSK
        KKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSK
Subjt:  KKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSK

A0A6J1DPB8 uncharacterized protein LOC111023059

5.9e-70

85.63

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Query:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLRWCAKLRSAAAKPSQ+V SVSSTRRIFHS+PSLYQPLHF+PNNL+SRS+FNA  QTHS LAAYQCIRSS LPLSVVQVRHVSSR+RR +RKP TP TS
Subjt:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+MKDGSIKRR EGKRHNAH KSK+SKR+LR+PA VPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

A0A6J1ESK5 uncharacterized protein LOC111437349

2.7e-67

83.23

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Query:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS
        MLRWC+KLRSAAAKPSQIV SVSSTRRIFHSAPSLYQPLHFSPNNL+SRSL NA  QTHS LAAYQCIRSSL PL  VQVRHVSSR+R+ +RKP TP TS
Subjt:  MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNA--QTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATS

Query:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+ KDGSIKRR EGKRHNAH KSK++KR+LR+P  VPLAYAKVMKKLNFC
Subjt:  KLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFC

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G45590.1 Ribosomal protein L35

1.2e-25

43.68

Show/hide

Query:  MLRWCAKLRSAAAKPSQIVKSV-SSTRRIFHSAPSLYQPLHFSP---NNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDR----RNKRKP
        M R+C KLRS + + ++ +    +S  R+ H +PS  + L  +     N    S   A    P +    + ++ +P   VQVR+++S+++    + K +P
Subjt:  MLRWCAKLRSAAAKPSQIVKSV-SSTRRIFHSAPSLYQPLHFSP---NNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDR----RNKRKP

Query:  TTPATSKLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN
         TP TSK+KK K+K YSS+K RF  + DG+I+R  EGKRHNAH KSK+SKR+LR+P +VP AYAKVMKKLNFCN
Subjt:  TTPATSKLKKTKLKAYSSYKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTCAGGTGGTGTGCCAAGCTCCGATCTGCGGCGGCGAAGCCATCTCAAATTGTAAAATCCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTATACCA
GCCCCTCCACTTCTCTCCGAATAATTTGAATTCCAGGTCCCTTTTCAATGCACAGACTCATTCTCCGCTCGCCGCTTACCAGTGTATTCGCTCTTCACTCTTGCCTCTCT
CTGTTGTTCAAGTGCGGCATGTTTCATCAAGAGACCGGCGGAATAAGAGAAAGCCAACGACGCCGGCCACTTCCAAATTGAAGAAAACTAAATTGAAAGCTTACTCGTCT
TACAAGTCTAGGTTTTGGTTGATGAAGGATGGGAGCATTAAACGTCGAATGGAAGGGAAAAGGCACAATGCACATTCCAAGTCTAAAAGATCAAAGCGGAAACTGAGAAA
ACCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTTGCAATTAG

mRNA sequence

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GTAGGTTTCTCTCTCCGAAAAAATTTCCATTGTCCTTGAATTACGACGGCGACGACGATGCTCAGGTGGTGTGCCAAGCTCCGATCTGCGGCGGCGAAGCCATCTCAAAT
TGTAAAATCCGTTTCTTCCACCCGCAGGATCTTTCACTCTGCTCCATCACTATACCAGCCCCTCCACTTCTCTCCGAATAATTTGAATTCCAGGTCCCTTTTCAATGCAC
AGACTCATTCTCCGCTCGCCGCTTACCAGTGTATTCGCTCTTCACTCTTGCCTCTCTCTGTTGTTCAAGTGCGGCATGTTTCATCAAGAGACCGGCGGAATAAGAGAAAG
CCAACGACGCCGGCCACTTCCAAATTGAAGAAAACTAAATTGAAAGCTTACTCGTCTTACAAGTCTAGGTTTTGGTTGATGAAGGATGGGAGCATTAAACGTCGAATGGA
AGGGAAAAGGCACAATGCACATTCCAAGTCTAAAAGATCAAAGCGGAAACTGAGAAAACCTGCCATTGTCCCATTAGCTTATGCCAAGGTAATGAAGAAGCTCAACTTTT
GCAATTAGGCTATTTGGTTTATTCCTTCACCTGTACTATTATATGGATTGAACGAGCTTCAACATCACCATTCAACTGCTTCTTCATTTTCCTTTTTTGGATTTCGAACT
CAAAGCTCTTAGAACAAACTAAGATGGAGAATAATTATTTCTTAGTTATATGAAGTGATTGCAGAGATTGTTATGATTTCAAATAGAGGTTATCTTTCTATTGTTATAAT
GTGTGAATTTTAGGGGTTAGGAGAGTTGAAATGTAATTATAATTACTTAATATTTGAGGGGTATTGGAATGCGCAAGTAATCGGGACAAAATGGAAATGGAATTGTAAAA
CGTGACGGTTAGAAAAAGTAGTTTATAAAAATGTTTTTTTTTAAAAAAAAATTTGATTCTTTAAAGTAGTTGTAAGCAAGTA

Protein sequence

Show/hide protein sequence

MLRWCAKLRSAAAKPSQIVKSVSSTRRIFHSAPSLYQPLHFSPNNLNSRSLFNAQTHSPLAAYQCIRSSLLPLSVVQVRHVSSRDRRNKRKPTTPATSKLKKTKLKAYSS
YKSRFWLMKDGSIKRRMEGKRHNAHSKSKRSKRKLRKPAIVPLAYAKVMKKLNFCN

Cmc04g0103771 (gene) of Melon (Charmono) v1.1 genome