| GenBank top hits | e value | %identity | Alignment |
|---|
| ADJ18449.1 gag/pol protein, partial [Bryonia dioica] | 3.4e-107 | 86.88 | Show/hide |
Query: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
MNDVD DQWIK+M+LEMESMY NSVWTLV+ P+DVKPIGCKWIYKRKRDQAGK QTFKARLVA GYTQKEG+DYEETFSPVAM+KSIRILLSIATFY+YE
Subjt: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
Query: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
IWQMDVKTAFLNGNLEESIYMVQP+GFI + +EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYK+I+N +VAFL+LYVDDILLIGND
Subjt: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
Query: VSHLTDIKKWLATQFQMKFLG
V +LTD+KKWL TQFQMK LG
Subjt: VSHLTDIKKWLATQFQMKFLG
|
|
| KAA0043610.1 gag/pol protein [Cucumis melo var. makuwa] | 6.6e-103 | 84.23 | Show/hide |
Query: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
MNDVDCDQW+K+MDL++ESMYSNSVWTLV+Q NDVK IGCKWIYKRKRDQAGK QTFKARLV GY +KEG++Y+ETFSPV M+KSIRILLSI TFYDYE
Subjt: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
Query: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
I QMDVKTAFLNGNLEESIYMVQP+GFI+KG+EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFE NVDEPCVYKRII VAFLVL VD+ILLIGND
Subjt: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
Query: VSHLTDIKKWLATQFQMKFLGN
+ HLT+IKKWLATQFQMK L N
Subjt: VSHLTDIKKWLATQFQMKFLGN
|
|
| KAA0045356.1 gag/pol protein [Cucumis melo var. makuwa] | 8.0e-109 | 88.24 | Show/hide |
Query: NDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEI
NDVD DQWIK+MDL+MESMYSNSVWTLV+QPN+++PIGCKWIYKRKRDQ K QTF+ARLVA GYTQKEGIDYEETFSP+AMIKSIRILLSIATFYDYEI
Subjt: NDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEI
Query: WQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGNDV
WQMDVKTAFLNGNLEESIYMVQP+GFI+KG+EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYKRIIN VAFLVLYVDDILLIGN+V
Subjt: WQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGNDV
Query: SHLTDIKKWLATQFQMKFLGN
HLTDIK+WL TQFQMK LG+
Subjt: SHLTDIKKWLATQFQMKFLGN
|
|
| TYK03644.1 gag/pol protein [Cucumis melo var. makuwa] | 3.2e-105 | 88.29 | Show/hide |
Query: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
MNDVD DQWIK+MDLEMESMYSNSVWTLV+QPNDVKPIGCKWIYKRKRDQAGK QTFKARLVA GYTQKEGIDYEE FS AMIKSIRILLSIATFYDYE
Subjt: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
Query: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
IWQMDVKT FLN NLEESIYMVQP+ FI+KG+EQK+ KLQKSIYGLKQASRS NIRFDT IKSYG EQNVDEPCVYKRI+N VAFLVLYVDDILLIGND
Subjt: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
Query: VSHLTDIKKWLATQFQMKFLGN
V HL DIKKWLA QFQMK LGN
Subjt: VSHLTDIKKWLATQFQMKFLGN
|
|
| TYK15984.1 gag/pol protein [Cucumis melo var. makuwa] | 2.1e-101 | 83.26 | Show/hide |
Query: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
MNDVD DQW+K+MDLEMESMY NSVW LV+ P VKPIGCKWIYKRKRD AGK QTFKARLVA GYTQ+EG+DYEETFSPVAM+KSIRILLSIATFYDYE
Subjt: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
Query: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
IWQMDVKTAFLNGNLEESI+M QP+GFI +G+EQKV KL +SIYGLKQASRSWNIRFDT IKSYGF+QNVDEPCVYK+I VAFLVLYVDDILLIGND
Subjt: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
Query: VSHLTDIKKWLATQFQMKFLG
V +LTD+K WLA QFQMK LG
Subjt: VSHLTDIKKWLATQFQMKFLG
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TK28 Gag/pol protein | 3.2e-103 | 84.23 | Show/hide |
Query: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
MNDVDCDQW+K+MDL++ESMYSNSVWTLV+Q NDVK IGCKWIYKRKRDQAGK QTFKARLV GY +KEG++Y+ETFSPV M+KSIRILLSI TFYDYE
Subjt: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
Query: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
I QMDVKTAFLNGNLEESIYMVQP+GFI+KG+EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFE NVDEPCVYKRII VAFLVL VD+ILLIGND
Subjt: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
Query: VSHLTDIKKWLATQFQMKFLGN
+ HLT+IKKWLATQFQMK L N
Subjt: VSHLTDIKKWLATQFQMKFLGN
|
|
| A0A5A7TTA2 Gag/pol protein | 3.9e-109 | 88.24 | Show/hide |
Query: NDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEI
NDVD DQWIK+MDL+MESMYSNSVWTLV+QPN+++PIGCKWIYKRKRDQ K QTF+ARLVA GYTQKEGIDYEETFSP+AMIKSIRILLSIATFYDYEI
Subjt: NDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEI
Query: WQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGNDV
WQMDVKTAFLNGNLEESIYMVQP+GFI+KG+EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYKRIIN VAFLVLYVDDILLIGN+V
Subjt: WQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGNDV
Query: SHLTDIKKWLATQFQMKFLGN
HLTDIK+WL TQFQMK LG+
Subjt: SHLTDIKKWLATQFQMKFLGN
|
|
| A0A5A7TZD0 Gag/pol protein | 1.0e-101 | 83.26 | Show/hide |
Query: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
MNDVD DQW+K+MDLEMESMY NSVW LV+ P VKPIGCKWIYKRKRD AGK QTFKARLVA GYTQ+EG+DYEETFSPVAM+KSIRILLSIATFYDYE
Subjt: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
Query: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
IWQMDVKTAFLNGNLEESI+M QP+GFI +G+EQKV KL +SIYGLKQASRSWNIRFDT IKSYGF+QNVDEPCVYK+I VAFLVLYVDDILLIGND
Subjt: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
Query: VSHLTDIKKWLATQFQMKFLG
V +LTD+K WLA QFQMK LG
Subjt: VSHLTDIKKWLATQFQMKFLG
|
|
| A0A5D3BX45 Gag/pol protein | 1.5e-105 | 88.29 | Show/hide |
Query: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
MNDVD DQWIK+MDLEMESMYSNSVWTLV+QPNDVKPIGCKWIYKRKRDQAGK QTFKARLVA GYTQKEGIDYEE FS AMIKSIRILLSIATFYDYE
Subjt: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
Query: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
IWQMDVKT FLN NLEESIYMVQP+ FI+KG+EQK+ KLQKSIYGLKQASRS NIRFDT IKSYG EQNVDEPCVYKRI+N VAFLVLYVDDILLIGND
Subjt: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
Query: VSHLTDIKKWLATQFQMKFLGN
V HL DIKKWLA QFQMK LGN
Subjt: VSHLTDIKKWLATQFQMKFLGN
|
|
| E2GK51 Gag/pol protein (Fragment) | 1.6e-107 | 86.88 | Show/hide |
Query: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
MNDVD DQWIK+M+LEMESMY NSVWTLV+ P+DVKPIGCKWIYKRKRDQAGK QTFKARLVA GYTQKEG+DYEETFSPVAM+KSIRILLSIATFY+YE
Subjt: MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYE
Query: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
IWQMDVKTAFLNGNLEESIYMVQP+GFI + +EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYK+I+N +VAFL+LYVDDILLIGND
Subjt: IWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGND
Query: VSHLTDIKKWLATQFQMKFLG
V +LTD+KKWL TQFQMK LG
Subjt: VSHLTDIKKWLATQFQMKFLG
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.4e-39 | 39.35 | Show/hide |
Query: DCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQM
D W ++++ E+ + N+ WT+ ++P + + +W++ K ++ G +KARLVA G+TQK IDYEETF+PVA I S R +LS+ Y+ ++ QM
Subjt: DCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQM
Query: DVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVY---KRIINFIVAFLVLYVDDILLIGNDV
DVKTAFLNG L+E IYM P+G V KL K+IYGLKQA+R W F+ +K F + + C+Y K IN + +++LYVDD+++ D+
Subjt: DVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVY---KRIINFIVAFLVLYVDDILLIGNDV
Query: SHLTDIKKWLATQFQM
+ + + K++L +F+M
Subjt: SHLTDIKKWLATQFQM
|
|
| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.1e-51 | 48.62 | Show/hide |
Query: DQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDV
+Q +K+M EMES+ N + LVE P +P+ CKW++K K+D K +KARLV G+ QK+GID++E FSPV + SIR +LS+A D E+ Q+DV
Subjt: DQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDV
Query: KTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVY-KRII--NFIVAFLVLYVDDILLIGNDVSH
KTAFL+G+LEE IYM QP+GF G++ V KL KS+YGLKQA R W ++FD+ +KS + + +PCVY KR NFI+ L+LYVDD+L++G D
Subjt: KTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVY-KRII--NFIVAFLVLYVDDILLIGNDVSH
Query: LTDIKKWLATQFQMKFLG
+ +K L+ F MK LG
Subjt: LTDIKKWLATQFQMKFLG
|
|
| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 3.9e-13 | 28.57 | Show/hide |
Query: DQWIKSMDLEMESMYSNSVWTLVE--QPNDVKP---IGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEI
D++I++ E+ + + W + ND+ P I +I+ +KRD T KAR VA G Q + S ++ LSIA DY I
Subjt: DQWIKSMDLEMESMYSNSVWTLVE--QPNDVKP---IGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEI
Query: WQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSY-----GFEQNVDEPCVYKRIINFIVAFLVLYVDDILL
Q+D+ +A+L +++E +Y+ P G K+ +L+KS+YGLKQ+ +W ++T IKSY ++ CV+K + L+VDD++L
Subjt: WQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSY-----GFEQNVDEPCVYKRIINFIVAFLVLYVDDILL
Query: IGNDVSHLTDIKKWLATQFQMKFL
D++ I L Q+ K +
Subjt: IGNDVSHLTDIKKWLATQFQMKFL
|
|
| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.2e-40 | 39.91 | Show/hide |
Query: DQWIKSMDLEMESMYSNSVWTLV-EQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMD
++W +M E+ + N W LV P+ V +GC+WI+ +K + G +KARLVA GY Q+ G+DY ETFSPV SIRI+L +A + I Q+D
Subjt: DQWIKSMDLEMESMYSNSVWTLV-EQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMD
Query: VKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGNDVSHLT
V AFL G L + +YM QP GFI K R V KL+K++YGLKQA R+W + + + GF +V + ++ + ++++YVDDIL+ GND + L
Subjt: VKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGNDVSHLT
Query: DIKKWLATQFQMK
+ L+ +F +K
Subjt: DIKKWLATQFQMK
|
|
| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.3e-40 | 39.91 | Show/hide |
Query: DQWIKSMDLEMESMYSNSVWTLV-EQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMD
D+W ++M E+ + N W LV P V +GC+WI+ +K + G +KARLVA GY Q+ G+DY ETFSPV SIRI+L +A + I Q+D
Subjt: DQWIKSMDLEMESMYSNSVWTLV-EQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMD
Query: VKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGNDVSHLT
V AFL G L + +YM QP GF+ K R V +L+K+IYGLKQA R+W + T + + GF ++ + ++ + ++++YVDDIL+ GND L
Subjt: VKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGNDVSHLT
Query: DIKKWLATQFQMK
L+ +F +K
Subjt: DIKKWLATQFQMK
|
|
