; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0104191 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0104191
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:21622421..21623317
RNA-Seq ExpressionCmc04g0104191
SyntenyCmc04g0104191
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035455.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]6.0e-15292.62Show/hide
Query:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE
        MRK VSRSL S+LKAEKLLRKGC AFLAHIVVVQ EKLKPEDVPVVKEFLDVFPDDLSGL  DREIEFTIELLPGTAPISQAPYRMAPS LKELKMQLQE
Subjt:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE

Query:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM
        LVD  YIRPSVSPWGAPVLF KKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGA LFS+IDLRSGYHQLKVRESDIAKT FRTRYGHYEFRVM
Subjt:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM

Query:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
        PF LTNAP+VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVL TL +KQLYAKF  CEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
Subjt:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN

KAA0036676.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-15292.95Show/hide
Query:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE
        MRK VSRSL S+LKAEKLLRKGC AFLAHIVVVQ EKLKPEDVPVVKEFLDVFPDDLSGL  DREIEFTIELLPGTAPISQAPYRMAPS LKELKMQLQE
Subjt:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE

Query:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM
        LVD  YIRPSVSPWGAPVLF KKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFS+IDLRSGYHQLKVRESDIAKT FRTRYGHYEFRVM
Subjt:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM

Query:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
        PF LTNAP+VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVL TL +KQLYAKF  CEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
Subjt:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-15292.95Show/hide
Query:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE
        MRK VSRSL S+LKAEKLLRKGC AFLAHIVVVQ EKLKPEDVPVVKEFLDVFPDDLSGL  DREIEFTIELLPGTAPISQAPYRMAPS LKELKMQLQE
Subjt:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE

Query:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM
        LVD  YIRPSVSPWGAPVLF KKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFS+IDLRSGYHQLKVRESDIAKT FRTRYGHYEFRVM
Subjt:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM

Query:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
        PF LTNAP+VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVL TL +KQLYAKF  CEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
Subjt:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN

KAA0062270.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.6e-15292.62Show/hide
Query:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE
        MRK VSRSL S+LKAEKLLRKGC  FLAHIVVVQ EKLKPEDVPVVKEFLDVFPDDLSGL  DREIEFTIELLPGTAPISQAPYRMAPS LKELKMQLQE
Subjt:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE

Query:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM
        LVD  YIRPSVSPWGAPVLF KKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFS+IDLRSGYHQLKVRESDIAKT FRTRYGHYEFRVM
Subjt:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM

Query:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
        PF LTNAP+VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVL TL +KQLYAKF  CEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
Subjt:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN

KAA0066849.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-15292.95Show/hide
Query:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE
        MRK VSRSL S+LKAEKLLRKGC AFLAHIVVVQ EKLKPEDVPVVKEFLDVFPDDLSGL  DREIEFTIELLPGTAPISQAPYRMAPS LKELKMQLQE
Subjt:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE

Query:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM
        LVD  YIRPSVSPWGAPVLF KKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFS+IDLRSGYHQLKVRESDIAKT FRTRYGHYEFRVM
Subjt:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM

Query:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
        PF LTNAP+VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVL TL +KQLYAKF  CEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
Subjt:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN

TrEMBL top hitse value%identityAlignment
A0A5A7T3K4 Reverse transcriptase7.7e-15392.95Show/hide
Query:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE
        MRK VSRSL S+LKAEKLLRKGC AFLAHIVVVQ EKLKPEDVPVVKEFLDVFPDDLSGL  DREIEFTIELLPGTAPISQAPYRMAPS LKELKMQLQE
Subjt:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE

Query:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM
        LVD  YIRPSVSPWGAPVLF KKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFS+IDLRSGYHQLKVRESDIAKT FRTRYGHYEFRVM
Subjt:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM

Query:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
        PF LTNAP+VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVL TL +KQLYAKF  CEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
Subjt:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN

A0A5A7U2V7 Reverse transcriptase2.9e-15292.62Show/hide
Query:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE
        MRK VSRSL S+LKAEKLLRKGC AFLAHIVVVQ EKLKPEDVPVVKEFLDVFPDDLSGL  DREIEFTIELLPGTAPISQAPYRMAPS LKELKMQLQE
Subjt:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE

Query:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM
        LVD  YIRPSVSPWGAPVLF KKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGA LFS+IDLRSGYHQLKVRESDIAKT FRTRYGHYEFRVM
Subjt:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM

Query:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
        PF LTNAP+VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVL TL +KQLYAKF  CEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
Subjt:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN

A0A5A7U819 Reverse transcriptase7.7e-15392.95Show/hide
Query:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE
        MRK VSRSL S+LKAEKLLRKGC AFLAHIVVVQ EKLKPEDVPVVKEFLDVFPDDLSGL  DREIEFTIELLPGTAPISQAPYRMAPS LKELKMQLQE
Subjt:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE

Query:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM
        LVD  YIRPSVSPWGAPVLF KKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFS+IDLRSGYHQLKVRESDIAKT FRTRYGHYEFRVM
Subjt:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM

Query:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
        PF LTNAP+VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVL TL +KQLYAKF  CEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
Subjt:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN

A0A5A7V4W9 Reverse transcriptase2.2e-15292.62Show/hide
Query:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE
        MRK VSRSL S+LKAEKLLRKGC  FLAHIVVVQ EKLKPEDVPVVKEFLDVFPDDLSGL  DREIEFTIELLPGTAPISQAPYRMAPS LKELKMQLQE
Subjt:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE

Query:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM
        LVD  YIRPSVSPWGAPVLF KKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFS+IDLRSGYHQLKVRESDIAKT FRTRYGHYEFRVM
Subjt:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM

Query:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
        PF LTNAP+VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVL TL +KQLYAKF  CEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
Subjt:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN

A0A5A7VNK4 Reverse transcriptase7.7e-15392.95Show/hide
Query:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE
        MRK VSRSL S+LKAEKLLRKGC AFLAHIVVVQ EKLKPEDVPVVKEFLDVFPDDLSGL  DREIEFTIELLPGTAPISQAPYRMAPS LKELKMQLQE
Subjt:  MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQE

Query:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM
        LVD  YIRPSVSPWGAPVLF KKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFS+IDLRSGYHQLKVRESDIAKT FRTRYGHYEFRVM
Subjt:  LVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVM

Query:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
        PF LTNAP+VFMDLMNRIFH+YLDQFVIVFIDDILVYSVDRESHEEHLRIVL TL +KQLYAKF  CEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN
Subjt:  PFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.9e-4035.71Show/hide
Query:  KELKMQLQELVDNEYIRPSVSPWGAPV-LFAKKKDGT----LRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKT
        +E++ Q+Q++++   IR S SP+ +P+ +  KK+D +     R+ IDYR+LN++T+ +++P+P +D++  +L     F+ IDL  G+HQ+++    ++KT
Subjt:  KELKMQLQELVDNEYIRPSVSPWGAPV-LFAKKKDGT----LRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKT

Query:  TFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGV
         F T++GHYE+  MPF L NAP+ F   MN I    L++  +V++DDI+V+S   + H + L +V   L    L  +   CEF  ++  FLGHV++  G+
Subjt:  TFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGV

Query:  SVDPQKVEAV
          +P+K+EA+
Subjt:  SVDPQKVEAV

P20825 Retrovirus-related Pol polyprotein from transposon 2974.5e-4136.56Show/hide
Query:  APISQAPYRMAPSVLKELKMQLQELVDNEYIRPSVSPWGAPVLFAKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRS
        +PI    Y +A +   E++ Q+QE+++   IR S SP+ +P     KK         R+ IDYR+LN++TI ++YP+P +D++  +L     F+ IDL  
Subjt:  APISQAPYRMAPSVLKELKMQLQELVDNEYIRPSVSPWGAPVLFAKKKD-----GTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRS

Query:  GYHQLKVRESDIAKTTFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWL
        G+HQ+++ E  I+KT F T+ GHYE+  MPF L NAP+ F   MN I    L++  +V++DDI+++S     H   +++V   L D  L  +   CEF  
Subjt:  GYHQLKVRESDIAKTTFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWL

Query:  EQVVFLGHVVSAKGVSVDPQKVEAVVN
        ++  FLGH+V+  G+  +P KV+A+V+
Subjt:  EQVVFLGHVVSAKGVSVDPQKVEAVVN

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein6.0e-4638.89Show/hide
Query:  VVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQELVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRN
        +++  L   P D++ +     ++  IE+ PG       PY +     +E+   +Q+L+DN++I PS SP  +PV+   KKDGT RLC+DYR LNK TI +
Subjt:  VVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQELVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRN

Query:  KYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESH
         +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KT F T  G YE+ VMPF L NAPS F   M   F     +FV V++DDIL++S   E H
Subjt:  KYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESH

Query:  EEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAV
         +HL  VL  L ++ L  K + C+F  E+  FLG+ +  + ++    K  A+
Subjt:  EEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAV

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus6.2e-4336.86Show/hide
Query:  EFLDVFPDDLSGLSLDREIEFTIELLPGTA-PISQAPYRMAPSVLKELKMQLQELVDNEYIRPSVSPWGAPVLFAKKK-----DGTLRLCIDYRQLNKVT
        EF  +F   LSG+S++  ++   E+   T  PI    Y    ++  E++ Q+ EL+ +  IRPS SP+ +P+    KK     +   R+ +D+++LN VT
Subjt:  EFLDVFPDDLSGLSLDREIEFTIELLPGTA-PISQAPYRMAPSVLKELKMQLQELVDNEYIRPSVSPWGAPVLFAKKK-----DGTLRLCIDYRQLNKVT

Query:  IRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDR
        I + YP+P I+     L  A  F+ +DL SG+HQ+ ++ESDI KT F T  G YEF  +PF L NAP++F  +++ I  +++ +   V+IDDI+V+S D 
Subjt:  IRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDR

Query:  ESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAV
        ++H ++LR+VL +L    L        F   QV FLG++V+A G+  DP+KV A+
Subjt:  ESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAV

Q99315 Transposon Ty3-G Gag-Pol polyprotein6.0e-4638.89Show/hide
Query:  VVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQELVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRN
        +++  L   P D++ +     ++  IE+ PG       PY +     +E+   +Q+L+DN++I PS SP  +PV+   KKDGT RLC+DYR LNK TI +
Subjt:  VVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQELVDNEYIRPSVSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRN

Query:  KYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESH
         +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  KT F T  G YE+ VMPF L NAPS F   M   F     +FV V++DDIL++S   E H
Subjt:  KYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFHQYLDQFVIVFIDDILVYSVDRESH

Query:  EEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAV
         +HL  VL  L ++ L  K + C+F  E+  FLG+ +  + ++    K  A+
Subjt:  EEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAV

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein6.9e-0543.4Show/hide
Query:  HLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAVV
        HL +VL      Q YA  + C F   Q+ +LG  H++S +GVS DP K+EA+V
Subjt:  HLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLG--HVVSAKGVSVDPQKVEAVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGAAGGTCGTTTCTAGAAGTTTAACCTCAATTTTGAAAGCTGAGAAATTGCTGAGGAAGGGTTGCATAGCGTTTCTTGCACACATCGTAGTAGTGCAGGGAGAAAA
GCTAAAGCCAGAAGATGTTCCTGTGGTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGTCACTTGATAGAGAGATTGAGTTCACCATTGAATTATTAC
CAGGAACAGCACCTATTTCACAGGCACCGTATAGAATGGCTCCAAGCGTGTTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAATGAATACATCAGGCCTAGT
GTTTCGCCGTGGGGAGCACCAGTGCTATTTGCTAAAAAGAAAGATGGTACCCTTAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCC
TTTACCACGCATTGATGACTTATTTGATCAACTAAGGGGAGCAACGTTGTTCTCTGAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTG
CTAAGACAACATTTAGAACGAGGTATGGGCATTATGAGTTTCGAGTTATGCCATTCAGTTTAACGAATGCGCCATCGGTTTTCATGGATCTCATGAACAGGATCTTCCAT
CAGTATTTAGATCAGTTTGTGATTGTGTTCATTGATGATATATTAGTTTACTCGGTTGACAGAGAATCCCATGAGGAACATCTAAGGATTGTTCTGCATACTCTATGTGA
TAAACAGTTGTACGCTAAGTTCAGGACATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGTGTTAGTGTCGATCCACAAAAAGTAG
AAGCGGTTGTCAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGAAGGTCGTTTCTAGAAGTTTAACCTCAATTTTGAAAGCTGAGAAATTGCTGAGGAAGGGTTGCATAGCGTTTCTTGCACACATCGTAGTAGTGCAGGGAGAAAA
GCTAAAGCCAGAAGATGTTCCTGTGGTGAAAGAGTTTCTTGATGTATTTCCAGATGATCTGTCAGGTTTGTCACTTGATAGAGAGATTGAGTTCACCATTGAATTATTAC
CAGGAACAGCACCTATTTCACAGGCACCGTATAGAATGGCTCCAAGCGTGTTAAAAGAATTGAAGATGCAGTTACAAGAACTAGTTGACAATGAATACATCAGGCCTAGT
GTTTCGCCGTGGGGAGCACCAGTGCTATTTGCTAAAAAGAAAGATGGTACCCTTAGATTATGTATTGACTATAGACAGTTAAACAAGGTTACAATACGTAACAAGTATCC
TTTACCACGCATTGATGACTTATTTGATCAACTAAGGGGAGCAACGTTGTTCTCTGAGATTGACTTAAGGTCAGGATACCACCAGTTGAAGGTTAGAGAATCAGATATTG
CTAAGACAACATTTAGAACGAGGTATGGGCATTATGAGTTTCGAGTTATGCCATTCAGTTTAACGAATGCGCCATCGGTTTTCATGGATCTCATGAACAGGATCTTCCAT
CAGTATTTAGATCAGTTTGTGATTGTGTTCATTGATGATATATTAGTTTACTCGGTTGACAGAGAATCCCATGAGGAACATCTAAGGATTGTTCTGCATACTCTATGTGA
TAAACAGTTGTACGCTAAGTTCAGGACATGTGAGTTCTGGTTGGAACAAGTAGTATTTTTGGGGCATGTAGTTTCAGCAAAAGGTGTTAGTGTCGATCCACAAAAAGTAG
AAGCGGTTGTCAATTAG
Protein sequenceShow/hide protein sequence
MRKVVSRSLTSILKAEKLLRKGCIAFLAHIVVVQGEKLKPEDVPVVKEFLDVFPDDLSGLSLDREIEFTIELLPGTAPISQAPYRMAPSVLKELKMQLQELVDNEYIRPS
VSPWGAPVLFAKKKDGTLRLCIDYRQLNKVTIRNKYPLPRIDDLFDQLRGATLFSEIDLRSGYHQLKVRESDIAKTTFRTRYGHYEFRVMPFSLTNAPSVFMDLMNRIFH
QYLDQFVIVFIDDILVYSVDRESHEEHLRIVLHTLCDKQLYAKFRTCEFWLEQVVFLGHVVSAKGVSVDPQKVEAVVN