CuGenDBv2

Gene ID	Cmc04g0104441
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr04:22158138..22159114
RNA-Seq Expression	Cmc04g0104441
Synteny	Cmc04g0104441
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026271.1 pol protein [Cucumis melo var. makuwa]

4.7e-152

87.38

Show/hide

Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAP +FMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEE+LR+VLQTLRDNKLYAKFSKCEFW KQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA
         RPSTVSEVRSFLGL                         APFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVI SDASKKGLGCVLMQQ KVVAYA
Subjt:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA

Query:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        S QLKSHEQNYPTHDLELA VVFALKIWR+YLYGEKIQIFT+HKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGVVIMQLA
        QAPLHRDLERAEIAVSVG V MQLA
Subjt:  QAPLHRDLERAEIAVSVGVVIMQLA

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

1.6e-152

87.69

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAP +FMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEE+LRMVLQTLRDNKLYAKFSKCEFW KQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA
         RPSTVSEVRSFLGL                         APFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVI SDASKKGLGCVLMQQ KVVAYA
Subjt:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA

Query:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        S QLKSHEQNYPTHDLELA VVFALKIWR+YLYGEKIQIFT+HKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGVVIMQLA
        QAPLHRDLERAEIAVSVG V MQLA
Subjt:  QAPLHRDLERAEIAVSVGVVIMQLA

KAA0054878.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.9e-159

96.66

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPTMFMDLMNRVFR+FLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLTAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFA
        PRPSTVSE+       APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQ KVVAYASCQLKSHEQNYPTHDLELAIVVFA
Subjt:  PRPSTVSEVRSFLGLTAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFA

Query:  LKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQ
        LKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQ
Subjt:  LKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQ

KAA0057672.1 pol protein [Cucumis melo var. makuwa]

1.6e-152

87.69

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAP +FMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEE+LRMVLQTLRDNKLYAKFSKCEFW KQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA
         RPSTVSEVRSFLGL                         APFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVI SDASKKGLGCVLMQQ KVVAYA
Subjt:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA

Query:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        S QLKSHEQNYPTHDLELA VVFALKIWR+YLYGEKIQIFT+HKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGVVIMQLA
        QAPLHRDLERAEIAVSVG V MQLA
Subjt:  QAPLHRDLERAEIAVSVGVVIMQLA

KAA0061618.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

6.1e-152

93.36

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAP +FMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEE+LRMVLQTLRDNKLYAKFSKCEFW KQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLTAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFA
         RPSTVSEVRSFLGLT  +   KACEDSFQNLKQKLVTAPVLTVPNGSGSFVI SDASKKGLGCVLMQQ KVVAYAS QLKSHEQNYPTHDLELA VVFA
Subjt:  PRPSTVSEVRSFLGLTAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFA

Query:  LKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQL
        LKIWR+YLYGEKIQIFT+HKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG V MQL
Subjt:  LKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQL

Query:  A
        A
Subjt:  A

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPZ2 Pol protein

2.3e-152

87.38

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAP +FMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEE+LR+VLQTLRDNKLYAKFSKCEFW KQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA
         RPSTVSEVRSFLGL                         APFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVI SDASKKGLGCVLMQQ KVVAYA
Subjt:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA

Query:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        S QLKSHEQNYPTHDLELA VVFALKIWR+YLYGEKIQIFT+HKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGVVIMQLA
        QAPLHRDLERAEIAVSVG V MQLA
Subjt:  QAPLHRDLERAEIAVSVGVVIMQLA

A0A5A7U330 Reverse transcriptase

7.8e-153

87.69

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAP +FMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEE+LRMVLQTLRDNKLYAKFSKCEFW KQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA
         RPSTVSEVRSFLGL                         APFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVI SDASKKGLGCVLMQQ KVVAYA
Subjt:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA

Query:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        S QLKSHEQNYPTHDLELA VVFALKIWR+YLYGEKIQIFT+HKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGVVIMQLA
        QAPLHRDLERAEIAVSVG V MQLA
Subjt:  QAPLHRDLERAEIAVSVGVVIMQLA

A0A5A7UIT8 Reverse transcriptase

1.9e-159

96.66

Show/hide

Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAPTMFMDLMNRVFR+FLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLTAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFA
        PRPSTVSE+       APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQ KVVAYASCQLKSHEQNYPTHDLELAIVVFA
Subjt:  PRPSTVSEVRSFLGLTAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFA

Query:  LKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQ
        LKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQ
Subjt:  LKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQ

A0A5A7UP94 Pol protein

7.8e-153

87.69

Show/hide

Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAP +FMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEE+LRMVLQTLRDNKLYAKFSKCEFW KQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA
         RPSTVSEVRSFLGL                         APFVWSKACEDSFQNLKQKLVTAPVLTVP+GSGSFVI SDASKKGLGCVLMQQ KVVAYA
Subjt:  PRPSTVSEVRSFLGLT------------------------APFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYA

Query:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
        S QLKSHEQNYPTHDLELA VVFALKIWR+YLYGEKIQIFT+HKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR
Subjt:  SCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITR

Query:  QAPLHRDLERAEIAVSVGVVIMQLA
        QAPLHRDLERAEIAVSVG V MQLA
Subjt:  QAPLHRDLERAEIAVSVGVVIMQLA

A0A5A7V223 Reverse transcriptase

2.9e-152

93.36

Show/hide

Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        MSFGLTNAP +FMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEE+LRMVLQTLRDNKLYAKFSKCEFW KQVSFLGHVVSKAGVSVDPAKIEAVT W
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLTAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFA
         RPSTVSEVRSFLGLT  +   KACEDSFQNLKQKLVTAPVLTVPNGSGSFVI SDASKKGLGCVLMQQ KVVAYAS QLKSHEQNYPTHDLELA VVFA
Subjt:  PRPSTVSEVRSFLGLTAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFA

Query:  LKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQL
        LKIWR+YLYGEKIQIFT+HKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVG V MQL
Subjt:  LKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQL

Query:  A
        A
Subjt:  A

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

9.7e-44

34.14

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        M FGL NAP  F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLTAPF-------------------------VWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAY
        P P+   E+++FLGLT  +                           +   + +F+ LK  +   P+L VP+ +  F + +DAS   LG VL Q    ++Y
Subjt:  PRPSTVSEVRSFLGLTAPF-------------------------VWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAY

Query:  ASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR
         S  L  HE NY T + EL  +V+A K +R+YL G   +I ++H+ L + +  K+ N +  RW   + ++D +I Y  GK N VADALSR
Subjt:  ASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR

P0CT41 Transposon Tf2-12 polyprotein

6.8e-37

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        M +G++ AP  F   +N +  E  ++ V+ ++DDILI+SK+E+EH ++++ VLQ L++  L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLG--------------LTAP----------FVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSK-----
         +P    E+R FLG              LT P          + W+     + +N+KQ LV+ PVL   + S   ++ +DAS   +G VL Q+       
Subjt:  PRPSTVSEVRSFLG--------------LTAP----------FVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSK-----

Query:  VVAYASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYG--EKIQIFTNHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV
         V Y S ++   + NY   D E+  ++ +LK WR+YL    E  +I T+H++L    T +    N R  RW   ++D++ EI Y PG AN +ADALSR V
Subjt:  VVAYASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYG--EKIQIFTNHKSLKYFFTQKE--LNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKV

Query:  SHS
          +
Subjt:  SHS

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

5.0e-40

32.01

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        + FGL NA ++F   ++ V RE +     V++DD++I+S+ E++H  ++  VL+ L D  +     K  F+ + V +LG +VSK G   DP K++A+  +
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLTA-----------------------------------PFVWSKACEDSFQNLKQKLVTAPV-LTVPNGSGSFVICSDASKKGLGC
        P P  V +VRSFLGL +                                   P  +++   ++FQ L+  L +  V L  P+    F + +DAS  G+G 
Subjt:  PRPSTVSEVRSFLGLTA-----------------------------------PFVWSKACEDSFQNLKQKLVTAPV-LTVPNGSGSFVICSDASKKGLGC

Query:  VLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEK-IQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAL
        VL Q+ + +   S  LK  EQNY T++ EL  +V+AL   + +LYG + I IFT+H+ L +    +  N + +RW   +  ++ ++ Y PGK N VADAL
Subjt:  VLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEK-IQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADAL

Query:  SRK
        SR+
Subjt:  SRK

P20825 Retrovirus-related Pol polyprotein from transposon 297

5.7e-44

34.48

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        M FGL NAP  F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+ S+
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLTAPF-----------------------VWSKACE--DSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAY
        P P+   E+R+FLGLT  +                       + ++  E  ++F+ LK  ++  P+L +P+    FV+ +DAS   LG VL Q    +++
Subjt:  PRPSTVSEVRSFLGLTAPF-----------------------VWSKACE--DSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAY

Query:  ASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR
         S  L  HE NY   + EL  +V+A K +R+YL G +  I ++H+ L++    KE   +  RW   + +Y  +I Y  GK N VADALSR
Subjt:  ASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

9.1e-42

31.8

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Query:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW
        + FGL NAP +F  +++ + RE +     V+IDDI+++S+    H + LR+VL +L    L     K  F   QV FLG++V+  G+  DP K+ A++  
Subjt:  MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSW

Query:  PRPSTVSEVRSFLGLTA-----------------------------------PFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCV
        P P++V E++ FLG+T+                                   P    +    SF +LK  L ++ +L  P  +  F + +DAS   +G V
Subjt:  PRPSTVSEVRSFLGLTA-----------------------------------PFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCV

Query:  LMQ----QSKVVAYASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGE-KIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA
        L Q    + + +AY S  L   E+NY T + E+  ++++L   R YLYG   I+++T+H+ L +    +  N + +RW   +++Y+CE++Y PGK+NVVA
Subjt:  LMQ----QSKVVAYASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGE-KIQIFTNHKSLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVA

Query:  DALSR
        DALSR
Subjt:  DALSR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

9.7e-15

34.62

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Query:  YLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLTAPF-----------------------VWS
        +L MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+  WP P   +E+R FLGLT  +                        W+
Subjt:  YLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLG--HVVSKAGVSVDPAKIEAVTSWPRPSTVSEVRSFLGLTAPF-----------------------VWS

Query:  KACEDSFQNLKQKLVTAPVLTVPNGSGSFV
        +    +F+ LK  + T PVL +P+    FV
Subjt:  KACEDSFQNLKQKLVTAPVLTVPNGSGSFV

Sequences

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CDS sequence

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ATGTCTTTTGGTTTGACGAATGCTCCGACAATGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATCGTGTTTATTGATGATATTTTGAT
ATATTCCAAGACAGAGGCTGAGCATGAGGAGTATTTACGTATGGTTCTGCAAACCCTTCGGGATAATAAATTGTATGCAAAGTTCTCGAAATGTGAGTTTTGGTTTAAGC
AGGTGTCCTTTCTAGGCCATGTGGTTTCTAAGGCTGGAGTTTCTGTGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGCCCCGACCTTCTACAGTCAGTGAGGTTCGT
AGCTTTTTGGGTTTAACAGCTCCTTTTGTTTGGAGCAAGGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACTGCACCGGTTCTTACTGTACCTAATGG
TTCAGGGAGTTTTGTGATTTGCAGTGATGCTTCTAAGAAGGGTTTGGGTTGTGTATTGATGCAGCAAAGTAAGGTAGTCGCTTATGCTTCTTGTCAGTTGAAGAGTCATG
AGCAGAATTACCCTACACACGATTTAGAGTTGGCAATAGTGGTTTTTGCATTGAAGATATGGAGGTATTACTTGTATGGTGAAAAGATACAGATCTTCACGAATCATAAG
AGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATATGAGACAGCGAAGATGGCTTGAGTTAGTGAAGGATTACGATTGTGAGATACTGTATCATCCAGGCAAGGCAAA
TGTGGTAGCTGATGCTCTTAGTAGAAAGGTATCACATTCAGCAGCACTTATTACCCGACAGGCCCCATTGCATCGAGATCTTGAGAGGGCTGAGATTGCAGTGTCAGTAG
GGGTAGTCATTATGCAGTTAGCCTAG

mRNA sequence

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Protein sequence

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MSFGLTNAPTMFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEYLRMVLQTLRDNKLYAKFSKCEFWFKQVSFLGHVVSKAGVSVDPAKIEAVTSWPRPSTVSEVR
SFLGLTAPFVWSKACEDSFQNLKQKLVTAPVLTVPNGSGSFVICSDASKKGLGCVLMQQSKVVAYASCQLKSHEQNYPTHDLELAIVVFALKIWRYYLYGEKIQIFTNHK
SLKYFFTQKELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAEIAVSVGVVIMQLA

Cmc04g0104441 (gene) of Melon (Charmono) v1.1 genome