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Cmc04g0104621 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0104621
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr04:22593639..22594112
RNA-Seq ExpressionCmc04g0104621
SyntenyCmc04g0104621
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025370.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.0e-6799.22Show/hide
Query:  GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACL
        GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARC TKKKACL
Subjt:  GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACL

Query:  VAQGYAQVEGVDFDETFAPVARLEAIRL
        VAQGYAQVEGVDFDETFAPVARLEAIRL
Subjt:  VAQGYAQVEGVDFDETFAPVARLEAIRL

KAA0035323.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.1e-6783.97Show/hide
Query:  EVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGT
        EVIADNS   PSAH+R NHPP SI GDPSAGIITRK+EKVNYSKMIADLCY S IEP T+DVALKDEYWINAMQ+EL QF  NN WTLVPKPEGANIIGT
Subjt:  EVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGT

Query:  KWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
        KWIFKNKTDEA C T  KA LV QGYAQV+GVDFDETFAPVARLEAIRLLL ISCI
Subjt:  KWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI

TYJ99674.1 gag-pol polyprotein [Cucumis melo var. makuwa]4.0e-6278.85Show/hide
Query:  EVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGT
        +V A+ +   PSAHVRKNHP  SI G+PS GI TRKKEKV+Y KMI DLCYT AIE  +IDVALKDEYWINAMQEELLQFR NN WTLVPKPEGANIIGT
Subjt:  EVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGT

Query:  KWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
        KW+FKNKTDEAR  T+ KA  VAQGYAQVEGV+FDETFAPVARLEAIRLLL +SCI
Subjt:  KWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI

TYK23431.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.0e-7099.26Show/hide
Query:  GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACL
        GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARC TKKKACL
Subjt:  GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACL

Query:  VAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
        VAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
Subjt:  VAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI

XP_016902757.1 PREDICTED: uncharacterized mitochondrial protein AtMg00820-like [Cucumis melo]2.8e-8499.36Show/hide
Query:  MEVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIG
        MEVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIG
Subjt:  MEVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIG

Query:  TKWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
        TKWIFKNKTDEARC TKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
Subjt:  TKWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI

TrEMBL top hitse value%identityAlignment
A0A1S4E3F3 uncharacterized mitochondrial protein AtMg00820-like1.4e-8499.36Show/hide
Query:  MEVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIG
        MEVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIG
Subjt:  MEVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIG

Query:  TKWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
        TKWIFKNKTDEARC TKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
Subjt:  TKWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI

A0A5A7SGU2 Putative mitochondrial protein3.4e-6799.22Show/hide
Query:  GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACL
        GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARC TKKKACL
Subjt:  GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACL

Query:  VAQGYAQVEGVDFDETFAPVARLEAIRL
        VAQGYAQVEGVDFDETFAPVARLEAIRL
Subjt:  VAQGYAQVEGVDFDETFAPVARLEAIRL

A0A5A7SXP1 Putative mitochondrial protein5.2e-6883.97Show/hide
Query:  EVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGT
        EVIADNS   PSAH+R NHPP SI GDPSAGIITRK+EKVNYSKMIADLCY S IEP T+DVALKDEYWINAMQ+EL QF  NN WTLVPKPEGANIIGT
Subjt:  EVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGT

Query:  KWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
        KWIFKNKTDEA C T  KA LV QGYAQV+GVDFDETFAPVARLEAIRLLL ISCI
Subjt:  KWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI

A0A5D3BKX4 Gag-pol polyprotein1.9e-6278.85Show/hide
Query:  EVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGT
        +V A+ +   PSAHVRKNHP  SI G+PS GI TRKKEKV+Y KMI DLCYT AIE  +IDVALKDEYWINAMQEELLQFR NN WTLVPKPEGANIIGT
Subjt:  EVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGT

Query:  KWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
        KW+FKNKTDEAR  T+ KA  VAQGYAQVEGV+FDETFAPVARLEAIRLLL +SCI
Subjt:  KWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI

A0A5D3DIC9 Putative mitochondrial protein5.1e-7199.26Show/hide
Query:  GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACL
        GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARC TKKKACL
Subjt:  GSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACL

Query:  VAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
        VAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI
Subjt:  VAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI

SwissProt top hitse value%identityAlignment
P04146 Copia protein9.3e-1440Show/hide
Query:  WINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEI
        W  A+  EL   + NN WT+  +PE  NI+ ++W+F  K +E     + KA LVA+G+ Q   +D++ETFAPVAR+ + R +L +
Subjt:  WINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.3e-1138.82Show/hide
Query:  INAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEIS
        + AMQEE+   + N  + LV  P+G   +  KW+FK K D      + KA LV +G+ Q +G+DFDE F+PV ++ +IR +L ++
Subjt:  INAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEIS

P92520 Uncharacterized mitochondrial protein AtMg008205.7e-1941.6Show/hide
Query:  IITRKKEKVNYSKMIADLCYTSAI--EPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQV
        ++TR K  +N       L  T+ I  EP ++  ALKD  W  AMQEEL     N  W LVP P   NI+G KW+FK K        + KA LVA+G+ Q 
Subjt:  IITRKKEKVNYSKMIADLCYTSAI--EPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQV

Query:  EGVDFDETFAPVARLEAIRLLLEIS
        EG+ F ET++PV R   IR +L ++
Subjt:  EGVDFDETFAPVARLEAIRLLLEIS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-1439.68Show/hide
Query:  AGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEG-ANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQ
        AGII   K    YS  ++     +  EP T   ALKDE W NAM  E+     N+ W LVP P     I+G +WIF  K +      + KA LVA+GY Q
Subjt:  AGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEG-ANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQ

Query:  VEGVDFDETFAPVARLEAIRLLLEIS
          G+D+ ETF+PV +  +IR++L ++
Subjt:  VEGVDFDETFAPVARLEAIRLLLEIS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.2e-1335.77Show/hide
Query:  ITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLV-PKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQVEG
        I +  +K +Y+  +A     +  EP T   A+KD+ W  AM  E+     N+ W LV P P    I+G +WIF  K +      + KA LVA+GY Q  G
Subjt:  ITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLV-PKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQVEG

Query:  VDFDETFAPVARLEAIRLLLEIS
        +D+ ETF+PV +  +IR++L ++
Subjt:  VDFDETFAPVARLEAIRLLLEIS

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 83.5e-1637.96Show/hide
Query:  LCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIR
        +C   A EP T + A +   W  AM +E+      + W +   P     IG KW++K K +      + KA LVA+GY Q EG+DF ETF+PV +L +++
Subjt:  LCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIR

Query:  LLLEISCI
        L+L IS I
Subjt:  LLLEISCI

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)4.0e-2041.6Show/hide
Query:  IITRKKEKVNYSKMIADLCYTSAI--EPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQV
        ++TR K  +N       L  T+ I  EP ++  ALKD  W  AMQEEL     N  W LVP P   NI+G KW+FK K        + KA LVA+G+ Q 
Subjt:  IITRKKEKVNYSKMIADLCYTSAI--EPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTDEARCATKKKACLVAQGYAQV

Query:  EGVDFDETFAPVARLEAIRLLLEIS
        EG+ F ET++PV R   IR +L ++
Subjt:  EGVDFDETFAPVARLEAIRLLLEIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTTATAGCTGATAACTCTGCTTTTGCTCCATCTGCACATGTAAGAAAGAATCATCCACCAGGTTCTATAAGAGGTGATCCTTCAGCTGGAATTATTACCAGAAA
GAAAGAGAAAGTAAATTACTCGAAGATGATTGCTGATTTATGTTATACATCTGCCATTGAACCCTTAACTATTGATGTTGCTCTTAAAGATGAATATTGGATAAATGCAA
TGCAAGAAGAACTACTTCAATTCAGGTGCAATAATTTTTGGACATTGGTTCCCAAGCCAGAAGGAGCGAATATTATAGGTACAAAATGGATCTTCAAAAATAAGACTGAT
GAAGCAAGGTGTGCGACAAAGAAGAAAGCTTGTTTAGTTGCTCAGGGTTATGCTCAAGTCGAAGGGGTTGACTTTGATGAAACCTTTGCACCTGTTGCCAGGCTTGAAGC
TATTCGCTTGTTACTCGAAATATCTTGTATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTTATAGCTGATAACTCTGCTTTTGCTCCATCTGCACATGTAAGAAAGAATCATCCACCAGGTTCTATAAGAGGTGATCCTTCAGCTGGAATTATTACCAGAAA
GAAAGAGAAAGTAAATTACTCGAAGATGATTGCTGATTTATGTTATACATCTGCCATTGAACCCTTAACTATTGATGTTGCTCTTAAAGATGAATATTGGATAAATGCAA
TGCAAGAAGAACTACTTCAATTCAGGTGCAATAATTTTTGGACATTGGTTCCCAAGCCAGAAGGAGCGAATATTATAGGTACAAAATGGATCTTCAAAAATAAGACTGAT
GAAGCAAGGTGTGCGACAAAGAAGAAAGCTTGTTTAGTTGCTCAGGGTTATGCTCAAGTCGAAGGGGTTGACTTTGATGAAACCTTTGCACCTGTTGCCAGGCTTGAAGC
TATTCGCTTGTTACTCGAAATATCTTGTATTTAA
Protein sequenceShow/hide protein sequence
MEVIADNSAFAPSAHVRKNHPPGSIRGDPSAGIITRKKEKVNYSKMIADLCYTSAIEPLTIDVALKDEYWINAMQEELLQFRCNNFWTLVPKPEGANIIGTKWIFKNKTD
EARCATKKKACLVAQGYAQVEGVDFDETFAPVARLEAIRLLLEISCI