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Cmc04g0104691 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0104691
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionDNA/RNA polymerases superfamily protein
Genome locationCMiso1.1chr04:22699259..22699612
RNA-Seq ExpressionCmc04g0104691
SyntenyCmc04g0104691
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-4988.03Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGLTN PAVFMDL+NRIFHQYL+QFVIVFIDDILVYSMDKKAH EHLRIVLQIL DKQLY KF+KCEF LNQVVFLGHVVSA GVSVDPQKVE +VNW
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
        ERPASATEV SFL L G
Subjt:  ERPASATEVCSFLCLVG

KAA0042309.1 reverse transcriptase [Cucumis melo var. makuwa]7.1e-4883.76Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGLTN PAVFMDLMNRIFH+YL+QFVIVFIDDILVYS+D+++H EHLRIVLQ L +KQLYAKF+KCEF L QVVFLGHVVSA GVSVDPQKVEA+VNW
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
        ERP SATEVCSFL L G
Subjt:  ERPASATEVCSFLCLVG

TYK00847.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]3.8e-4988.03Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGL N PAVFMDLMNRIFHQYL+QFVI+FIDDILVYSMDKKAH EHLRIVLQ L DKQLYAKFNKCEF LNQVVFLGHVVSA GVSVDPQKVE +VNW
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
        ERPASATEV SFL L G
Subjt:  ERPASATEVCSFLCLVG

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-4988.03Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGLTN PAVFMDL+NRIFHQYL+QFVIVFIDDILVYSMDKKAH EHLRIVLQIL DKQLY KF+KCEF LNQVVFLGHVVSA GVSVDPQKVE +VNW
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
        ERPASATEV SFL L G
Subjt:  ERPASATEVCSFLCLVG

TYK05031.1 reverse transcriptase [Cucumis melo var. makuwa]1.4e-4885.47Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGLTN P  FM+LMNRIFHQYL+QFVIVFIDDILVYSMDKKAH EHLRIVLQ L DKQLYAKF+KCE  LNQVVFLGHVVSADGVSVDPQKVE + NW
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
        ERP SATEVCSFL L G
Subjt:  ERPASATEVCSFLCLVG

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase6.3e-5088.03Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGLTN PAVFMDL+NRIFHQYL+QFVIVFIDDILVYSMDKKAH EHLRIVLQIL DKQLY KF+KCEF LNQVVFLGHVVSA GVSVDPQKVE +VNW
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
        ERPASATEV SFL L G
Subjt:  ERPASATEVCSFLCLVG

A0A5A7TLU6 Reverse transcriptase3.4e-4883.76Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGLTN PAVFMDLMNRIFH+YL+QFVIVFIDDILVYS+D+++H EHLRIVLQ L +KQLYAKF+KCEF L QVVFLGHVVSA GVSVDPQKVEA+VNW
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
        ERP SATEVCSFL L G
Subjt:  ERPASATEVCSFLCLVG

A0A5D3BNL5 DNA/RNA polymerases superfamily protein1.8e-4988.03Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGL N PAVFMDLMNRIFHQYL+QFVI+FIDDILVYSMDKKAH EHLRIVLQ L DKQLYAKFNKCEF LNQVVFLGHVVSA GVSVDPQKVE +VNW
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
        ERPASATEV SFL L G
Subjt:  ERPASATEVCSFLCLVG

A0A5D3BTP3 Reverse transcriptase6.3e-5088.03Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGLTN PAVFMDL+NRIFHQYL+QFVIVFIDDILVYSMDKKAH EHLRIVLQIL DKQLY KF+KCEF LNQVVFLGHVVSA GVSVDPQKVE +VNW
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
        ERPASATEV SFL L G
Subjt:  ERPASATEVCSFLCLVG

A0A5D3BZC5 Reverse transcriptase6.9e-4985.47Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGLTN P  FM+LMNRIFHQYL+QFVIVFIDDILVYSMDKKAH EHLRIVLQ L DKQLYAKF+KCE  LNQVVFLGHVVSADGVSVDPQKVE + NW
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
        ERP SATEVCSFL L G
Subjt:  ERPASATEVCSFLCLVG

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.68.5e-2041.03Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGL N PA F   MN I    LN+  +V++DDI+V+S     H + L +V + L    L  + +KCEFL  +  FLGHV++ DG+  +P+K+EAI  +
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
          P    E+ +FL L G
Subjt:  ERPASATEVCSFLCLVG

P10401 Retrovirus-related Pol polyprotein from transposon gypsy5.3e-1432.17Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        +PFGL N  ++F   ++ +  + + +   V++DD++++S ++  H  H+  VL+ L D  +     K  F    V +LG +VS DG   DP+KV+AI  +
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCL
          P    +V SFL L
Subjt:  ERPASATEVCSFLCL

P20825 Retrovirus-related Pol polyprotein from transposon 2976.5e-2041.03Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        MPFGL N PA F   MN I    LN+  +V++DDI+++S     H   +++V   L D  L  + +KCEFL  +  FLGH+V+ DG+  +P KV+AIV++
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFLCLVG
          P    E+ +FL L G
Subjt:  ERPASATEVCSFLCLVG

P92523 Uncharacterized mitochondrial protein AtMg008607.2e-1147.22Show/hide
Query:  HLRIVLQILHDKQLYAKFNKCEFLLNQVVFLG--HVVSADGVSVDPQKVEAIVNWERPASATEVCSFLCLVG
        HL +VLQI    Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V W  P + TE+  FL L G
Subjt:  HLRIVLQILHDKQLYAKFNKCEFLLNQVVFLG--HVVSADGVSVDPQKVEAIVNWERPASATEVCSFLCLVG

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.6e-1841.59Show/hide
Query:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW
        +PFGL N PA+F  +++ I  +++ +   V+IDDI+V+S D   H ++LR+VL  L    L     K  FL  QV FLG++V+ADG+  DP+KV AI   
Subjt:  MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNW

Query:  ERPASATEVCSFL
          P S  E+  FL
Subjt:  ERPASATEVCSFL

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein5.1e-1247.22Show/hide
Query:  HLRIVLQILHDKQLYAKFNKCEFLLNQVVFLG--HVVSADGVSVDPQKVEAIVNWERPASATEVCSFLCLVG
        HL +VLQI    Q YA   KC F   Q+ +LG  H++S +GVS DP K+EA+V W  P + TE+  FL L G
Subjt:  HLRIVLQILHDKQLYAKFNKCEFLLNQVVFLG--HVVSADGVSVDPQKVEAIVNWERPASATEVCSFLCLVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTCGGTTTAACAAATGAGCCAGCAGTTTTCATGGACCTCATGAACAGGATCTTCCATCAGTATTTAAATCAGTTTGTGATAGTGTTCATCGATGACATACTAGT
TTACTCAATGGACAAGAAAGCCCATGCGGAACATCTGAGGATTGTTCTACAAATATTGCATGATAAACAACTATACGCTAAGTTCAACAAATGTGAGTTCTTGTTAAATC
AAGTGGTGTTCTTAGGGCATGTGGTTTCAGCGGACGGAGTTAGTGTTGATCCACAGAAAGTGGAAGCTATTGTCAATTGGGAGAGACCAGCTAGTGCAACAGAGGTATGT
AGTTTCCTATGCTTGGTCGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCGGTTTAACAAATGAGCCAGCAGTTTTCATGGACCTCATGAACAGGATCTTCCATCAGTATTTAAATCAGTTTGTGATAGTGTTCATCGATGACATACTAGT
TTACTCAATGGACAAGAAAGCCCATGCGGAACATCTGAGGATTGTTCTACAAATATTGCATGATAAACAACTATACGCTAAGTTCAACAAATGTGAGTTCTTGTTAAATC
AAGTGGTGTTCTTAGGGCATGTGGTTTCAGCGGACGGAGTTAGTGTTGATCCACAGAAAGTGGAAGCTATTGTCAATTGGGAGAGACCAGCTAGTGCAACAGAGGTATGT
AGTTTCCTATGCTTGGTCGGATAG
Protein sequenceShow/hide protein sequence
MPFGLTNEPAVFMDLMNRIFHQYLNQFVIVFIDDILVYSMDKKAHAEHLRIVLQILHDKQLYAKFNKCEFLLNQVVFLGHVVSADGVSVDPQKVEAIVNWERPASATEVC
SFLCLVG