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Cmc04g0104741 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0104741
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr04:22868380..22870348
RNA-Seq ExpressionCmc04g0104741
SyntenyCmc04g0104741
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025339.1 gag/pol protein [Cucumis melo var. makuwa]5.8e-70100Show/hide
Query:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
Subjt:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKGGPLLENMSWT
        MFGQPEWSLRHEAIKYIYTKRMKGGPLLENMSWT
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKGGPLLENMSWT
KAA0035676.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-5790.4Show/hide
Query:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLAS+KL+ DNYA WKSNLNTILVVDDLRF+LTEECPQTPT NANRASR++YD+WIKANEKARVYILASMSDVLAKKHE LATTKEI+DSLKG
Subjt:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKGG
        MFGQPEWSLRHEAIKYIYTKRMK G
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKGG
KAA0041460.1 gag/pol protein [Cucumis melo var. makuwa]5.6e-5790.4Show/hide
Query:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLL+SEKL+ DNYAAWKSNLNTILVVDDLRFVLTEECP+TPT NANR SRK+YD+WIKANEKARVYILASMSDVLAKKHESLAT KEIM+SLKG
Subjt:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKGG
        MFGQP+WSLRHEAIKYIYTKRMK G
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKGG
KAA0050552.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-5690.4Show/hide
Query:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLASEKL+ DNYAAWKSNLNTILVVDDLRF+LTEECPQT   NANRASRK+YD+WIKANEKA VYILASM+DVLAKKHESLATTK+IMDSLKG
Subjt:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKGG
        MFGQPEWSLRHEAIKYIYTKRMK G
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKGG
TYK29682.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-5791.2Show/hide
Query:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLASEKL+ DNY AWKSNLNTILVVDDLRF+LTEEC QTPTLNANRASRK+YD+WIKANEKARVYILASMSDVLAKK+ESLAT KEIMDSLKG
Subjt:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKGG
        +FGQPEWSLRHEAIKYIYTKRMK G
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKGG
TrEMBL top hitse value%identityAlignment
A0A5A7SJ55 Gag/pol protein2.8e-70100Show/hide
Query:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
Subjt:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKGGPLLENMSWT
        MFGQPEWSLRHEAIKYIYTKRMKGGPLLENMSWT
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKGGPLLENMSWT
A0A5A7T0E9 Gag/pol protein1.6e-5790.4Show/hide
Query:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLAS+KL+ DNYA WKSNLNTILVVDDLRF+LTEECPQTPT NANRASR++YD+WIKANEKARVYILASMSDVLAKKHE LATTKEI+DSLKG
Subjt:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKGG
        MFGQPEWSLRHEAIKYIYTKRMK G
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKGG
A0A5D3D5J6 Gag/pol protein6.1e-5790.4Show/hide
Query:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLASEKL+ DNYAAWKSNLNTILVVDDLRF+LTEECPQT   NANRASRK+YD+WIKANEKA VYILASM+DVLAKKHESLATTK+IMDSLKG
Subjt:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKGG
        MFGQPEWSLRHEAIKYIYTKRMK G
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKGG
A0A5D3DL59 Gag/pol protein2.7e-5790.4Show/hide
Query:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLL+SEKL+ DNYAAWKSNLNTILVVDDLRFVLTEECP+TPT NANR SRK+YD+WIKANEKARVYILASMSDVLAKKHESLAT KEIM+SLKG
Subjt:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKGG
        MFGQP+WSLRHEAIKYIYTKRMK G
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKGG
A0A5D3E173 Gag/pol protein1.6e-5791.2Show/hide
Query:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG
        MNSSIVQLLASEKL+ DNY AWKSNLNTILVVDDLRF+LTEEC QTPTLNANRASRK+YD+WIKANEKARVYILASMSDVLAKK+ESLAT KEIMDSLKG
Subjt:  MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKG

Query:  MFGQPEWSLRHEAIKYIYTKRMKGG
        +FGQPEWSLRHEAIKYIYTKRMK G
Subjt:  MFGQPEWSLRHEAIKYIYTKRMKGG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAGCTCGATAGTTCAATTATTAGCTTCCGAAAAACTTCACGACGATAACTATGCGGCATGGAAATCAAATCTTAACACAATACTAGTTGTTGATGATTTAAGATT
TGTCTTAACTGAGGAATGTCCTCAAACCCCAACCTTAAATGCGAACCGAGCTAGTCGGAAATCATATGATCAATGGATAAAAGCAAATGAGAAAGCCCGTGTCTATATCC
TTGCTAGCATGTCAGATGTTTTAGCAAAGAAACACGAATCCTTAGCCACGACTAAAGAGATTATGGATTCTTTAAAAGGAATGTTTGGGCAACCAGAGTGGTCCCTAAGA
CACGAGGCAATCAAATACATTTACACTAAGCGTATGAAGGGGGGACCTCTGTTAGAGAACATGTCCTGGACATGA
mRNA sequenceShow/hide mRNA sequence
CATCGTAGGTTAAAATCCAGTATAAATGTTATACTTGGATGGTTTACCTAGATTTAGGATTTGTTTAAGTTAGCATAAAATAAATCCTAAATAATCTACCAAAAAATCTT
TTTAGACACTTCAGCTGGAGAAAAGTATCGTACTTTTGGCTCTAACGTCCCAAAGAGTTCACACCGTGAGGTTCATGCAAGGCTTTGGGCCGTGCATAGGAGCGGACTCC
CTTCAGAGAGTGTTTGCATGAGCTATGAACAAGGTGAATGGGGGAAGTAGTTTATAGTAAGTGGGTGAGGGATTTATGACAATACATCCCACGGTCTCTTCCATTGGGTC
GCACCGTGAGATTCCTATAATGTGCCTGCTTGTCTGCCCTGGAGTGACGTCCCCTTCGAAAGGCTGTATATAGGATTCGGAACACCGCGAACTCCATATTTGGATAGGGT
CTCTTAGATAAGTTTTCATATTGTCTTTCTACTTTCAGGAGCATAATGATTCTCATCTATGAGGACCAAAAATGGAGGGGCACACTTACAAGAATTACTAAAATAGATAG
TGTATTCTTGACCGAAGTAAATGGTAACTAAATGCTAAGTAAATATGAGATATTTGTGAGTTAGTGTTTGGTCAAGATTGTCTTGATTCAAAGGACGAGTAATCGGCTAC
CCCTCAGTAGAGGTTATTTTCAACCTTTGAATTATCGTTGCAAAACATAATAAAAGGGTATATTATTTAAAGTTTTGCTAAAATTATTGGTTTATTCAGATTATAGTTTC
TAAACAAAGTATGTTTGTTTTTCAGCATGAATAGCTCGATAGTTCAATTATTAGCTTCCGAAAAACTTCACGACGATAACTATGCGGCATGGAAATCAAATCTTAACACA
ATACTAGTTGTTGATGATTTAAGATTTGTCTTAACTGAGGAATGTCCTCAAACCCCAACCTTAAATGCGAACCGAGCTAGTCGGAAATCATATGATCAATGGATAAAAGC
AAATGAGAAAGCCCGTGTCTATATCCTTGCTAGCATGTCAGATGTTTTAGCAAAGAAACACGAATCCTTAGCCACGACTAAAGAGATTATGGATTCTTTAAAAGGAATGT
TTGGGCAACCAGAGTGGTCCCTAAGACACGAGGCAATCAAATACATTTACACTAAGCGTATGAAGGGGGGACCTCTGTTAGAGAACATGTCCTGGACATGATGATGCACT
TCAATATAGCTTAGGTAAATGGTGGTGCCATCGATGAAGCTAATCAATTTAGTTTTATCTTAGAGTCTCTTCCGAAGAGCTTCATACCATTCCAAACGAATGCATCCCTG
AATAAGATAGAGTTTAATCTGACAATCCTTCTGAATGAGCTCTAGCGATTCCAGAATCTTACCAAGGGTAAGGGAAAGAAAGTAGAAGCAAATGTTGCTACTACAAAAGG
AAAATTCAAAAGAGGATCGTCCTCTAGATCTAAATATGAACCATCAAAACCCAATCAAAAGATTAAAAAGAAGGGAAAGGGGAAGACTCCCAAGCAAAACAAGGTAAAGA
AGACTACAGAAAAAGGTAAATGTTACCACTGTGGTGAAAATGGGCACTGGCTGAGAAACTGTCCAAAATACCTTGCTCAGAAAAAAGCAGAGAAAGAAGCACAAGGAAAC
TAGTTCTTGGAAAAAGCTTTCTGAGGGCGAGATCACTCTCAAAGTTGGAACTGGAGATATGGTCTCAGTTAAAGCAATGGGAGATTTAAAGTTATTTTTTAATGATAGAT
ATATTCTACTCAAGAATGTCTTGTATGCACCTCAAATGAAGAGGAATTTGATATCTATCTCTTGTTTAATAGAACATATGTATAAAATATTTTTTGAAATTAATG
Protein sequenceShow/hide protein sequence
MNSSIVQLLASEKLHDDNYAAWKSNLNTILVVDDLRFVLTEECPQTPTLNANRASRKSYDQWIKANEKARVYILASMSDVLAKKHESLATTKEIMDSLKGMFGQPEWSLR
HEAIKYIYTKRMKGGPLLENMSWT