CuGenDBv2

Gene ID	Cmc04g0104861
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag protease polyprotein
Genome location	CMiso1.1chr04:23066017..23066562
RNA-Seq Expression	Cmc04g0104861
Synteny	Cmc04g0104861
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR021109 - Aspartic peptidase domain superfamily IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

ADN33767.1 gag protease polyprotein, partial [Cucumis melo subsp. melo]

3.8e-93

98.9

Show/hide

Query:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
        MLSKEKVKACQI+IAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
Subjt:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD

Query:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
        TREADVSLSSEPVVRDYPDVFPEELPGLPP REVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
Subjt:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

KAA0037291.1 pol protein [Cucumis melo var. makuwa]

3.8e-93

98.9

Show/hide

Query:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
        MLSKEKVKACQI+IAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
Subjt:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD

Query:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
        TREADVSLSSEPVVRDYPDVFPEELPGLPP REVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
Subjt:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

KAA0043391.1 pol protein [Cucumis melo var. makuwa]

3.8e-93

98.9

Show/hide

Query:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
        MLSKEKVKACQI+IAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
Subjt:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD

Query:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
        TREADVSLSSEPVVRDYPDVFPEELPGLPP REVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
Subjt:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

KAA0063859.1 gag protease polyprotein [Cucumis melo var. makuwa]

6.6e-93

98.34

Show/hide

Query:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
        MLSKEKVKACQI+IAGHVIEVTL+VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
Subjt:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD

Query:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
        TREADVSLSSEPVVRDYPDVFPEELPGLPP REVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
Subjt:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

TYK01613.1 pol protein [Cucumis melo var. makuwa]

3.8e-93

98.9

Show/hide

Query:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
        MLSKEKVKACQI+IAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
Subjt:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD

Query:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
        TREADVSLSSEPVVRDYPDVFPEELPGLPP REVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
Subjt:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T6R9 Reverse transcriptase

1.9e-93

98.9

Show/hide

Query:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
        MLSKEKVKACQI+IAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
Subjt:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD

Query:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
        TREADVSLSSEPVVRDYPDVFPEELPGLPP REVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
Subjt:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

A0A5A7TP96 Reverse transcriptase

1.9e-93

98.9

Show/hide

Query:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
        MLSKEKVKACQI+IAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
Subjt:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD

Query:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
        TREADVSLSSEPVVRDYPDVFPEELPGLPP REVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
Subjt:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

A0A5A7VEB0 Gag protease polyprotein

3.2e-93

98.34

Show/hide

Query:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
        MLSKEKVKACQI+IAGHVIEVTL+VLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
Subjt:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD

Query:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
        TREADVSLSSEPVVRDYPDVFPEELPGLPP REVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
Subjt:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

A0A5D3BPI1 Reverse transcriptase

1.9e-93

98.9

Show/hide

Query:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
        MLSKEKVKACQI+IAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
Subjt:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD

Query:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
        TREADVSLSSEPVVRDYPDVFPEELPGLPP REVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
Subjt:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

E5GBB7 Gag protease polyprotein (Fragment)

1.9e-93

98.9

Show/hide

Query:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
        MLSKEKVKACQI+IAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD
Subjt:  MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVD

Query:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
        TREADVSLSSEPVVRDYPDVFPEELPGLPP REVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP
Subjt:  TREADVSLSSEPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGTCGAAGGAAAAGGTGAAGGCATGTCAGATTGATATAGCAGGCCATGTGATTGAAGTAACACTGATAGTTCTGGATATGCTGGACTTTGATGTAATCCTGGGTAT
GGATTGGTTGGCCGCTAACCACGCCAGCATAGATTGTTCACGTAAGGAAGTAACGTTTAACCCTCCCTCGATGGCCAGTTTTAAATTTAAGGGAGGAGGGTCAAAGTCGT
TGCCTCAGGTAATCTCAGCCATCAGGGCCAGTAAACTGCTCAGTCAGGGTACTTGGGGTATCTTAGCGAGCGTGGTGGATACTAGAGAGGCCGATGTATCCCTGTCATCA
GAACCAGTAGTGAGGGACTATCCGGACGTTTTTCCTGAGGAACTTCCAGGGTTACCTCCGCGCAGAGAGGTTGAGTTTGCCATAGAGTTGGAGCCGGGCACGGTTCCTAT
ATCCAGAGCCCCTTACAGAATGGCCCCCGCAGAACTGAAAGAACTGAAGGTACAGTTACAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGA

mRNA sequence

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Protein sequence

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MLSKEKVKACQIDIAGHVIEVTLIVLDMLDFDVILGMDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILASVVDTREADVSLSS
EPVVRDYPDVFPEELPGLPPRREVEFAIELEPGTVPISRAPYRMAPAELKELKVQLQELLDKGFIRPSVSP

Cmc04g0104861 (gene) of Melon (Charmono) v1.1 genome