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Cmc04g0104891 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0104891
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr04:23133649..23134488
RNA-Seq ExpressionCmc04g0104891
SyntenyCmc04g0104891
Gene Ontology termsGO:0006629 - lipid metabolic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0018130 - heterocycle biosynthetic process (biological process)
GO:0044271 - cellular nitrogen compound biosynthetic process (biological process)
GO:1901362 - organic cyclic compound biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004806 - triglyceride lipase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016491 - oxidoreductase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
GO:0016829 - lyase activity (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035949.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.2e-13293.85Show/hide
Query:  MFILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGH
        MFILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHS NLM HKG GKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGH
Subjt:  MFILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGH

Query:  YQKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYV
        YQKDCLKRKAWFENKGKHN LVCFESNLTEVPYN WWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVP+EA+ TYRLTLD GHHLDLFD FYV
Subjt:  YQKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYV

Query:  PSISRDLISLSKLDTSSYYFKFVNECFSLFKKNIFIGSGILCDD
        PSISR+LISLSKLDTS YYFK  NECFSLFK+NIFIGSGILCDD
Subjt:  PSISRDLISLSKLDTSSYYFKFVNECFSLFKKNIFIGSGILCDD

KAA0039623.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.1e-11489.29Show/hide
Query:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY
        FILNSLP +YGPFH+NYN LKDKWNVHELQSMLIQEEARLKKPIIHS NLMGHKGAGKK GKKNGKGNHGQLKVKQSSAPIHKK QIKDKCRFCNKPGHY
Subjt:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY

Query:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP
        QKDCLKRKAWFENKGKHN LVCFESNLTEVPYN WWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGN VKV +EAVGTY LTLD GHHLDLFDTFYVP
Subjt:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP

Query:  SISRDLISLSKLDTSSYYFKFVNE
        S+SR+LISLSKLDTS +     N+
Subjt:  SISRDLISLSKLDTSSYYFKFVNE

KAA0061857.1 copia-like pol polyprotein [Cucumis melo var. makuwa]4.7e-11493.93Show/hide
Query:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY
        FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHS NLMGHKGAGKKPGKKNGKGNH QLKVKQSSAPIHKKGQIKDK RFCNKPGHY
Subjt:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY

Query:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP
        QKDCLKRKAWFENKGKHN LVCFESNLTEVPYN WWIDSGC  HV N MQGFLTTRTTNPNERFIFMGNRVKVP+EAVGTYRLTLD GHHLDLF TFYVP
Subjt:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP

Query:  SISRDLISLSKLDT
        SISR+LISLSKLDT
Subjt:  SISRDLISLSKLDT

RYE18822.1 hypothetical protein EOP45_13565, partial [Sphingobacteriaceae bacterium]1.1e-11272.2Show/hide
Query:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY
        FILNSLP EYG FH++YNTLKDKW+VHELQSMLIQEEARLKK   HS NL+GHKGA KKP  K GKG  G  K+ +SS  IHKK Q  D CRFC K GH+
Subjt:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY

Query:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP
        QKDC KRK WFE KGK +  VCFESN  EVPYN WW+DSGCT HVSNTMQGFLTT+T + NE+FI MGNR KV +EA+GTYRL LD GHHLDLF TFYVP
Subjt:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP

Query:  SISRDLISLSKLDTSSYYFKFVNECFSLFKKNIFIGSGILCDDLYKLKLDNVFAESLLTLYHNVGTKRGQTNESSAY
        S+SR+L+S+SKLD + Y F F N CFSLFK+N+F+GSGILCD LYKLKLD  FAE+LLT++HNVGTKRG +NESSAY
Subjt:  SISRDLISLSKLDTSSYYFKFVNECFSLFKKNIFIGSGILCDDLYKLKLDNVFAESLLTLYHNVGTKRGQTNESSAY

TYK04469.1 copia-like pol polyprotein [Cucumis melo var. makuwa]1.4e-11895.81Show/hide
Query:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY
        FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHS NLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY
Subjt:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY

Query:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP
        QKDCLKRKAWFENKGKHN LVCFESNLTEVPYN WWIDSGCTIHVSNTMQGFLTTR TNPNER IFMGNRVKVP+EAVGTYRLTLD GHHLDL+DTFYVP
Subjt:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP

Query:  SISRDLISLSKLDTS
        SISR+LISLSKLDTS
Subjt:  SISRDLISLSKLDTS

TrEMBL top hitse value%identityAlignment
A0A4Q3EHL3 Uncharacterized protein (Fragment)5.6e-11372.2Show/hide
Query:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY
        FILNSLP EYG FH++YNTLKDKW+VHELQSMLIQEEARLKK   HS NL+GHKGA KKP  K GKG  G  K+ +SS  IHKK Q  D CRFC K GH+
Subjt:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY

Query:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP
        QKDC KRK WFE KGK +  VCFESN  EVPYN WW+DSGCT HVSNTMQGFLTT+T + NE+FI MGNR KV +EA+GTYRL LD GHHLDLF TFYVP
Subjt:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP

Query:  SISRDLISLSKLDTSSYYFKFVNECFSLFKKNIFIGSGILCDDLYKLKLDNVFAESLLTLYHNVGTKRGQTNESSAY
        S+SR+L+S+SKLD + Y F F N CFSLFK+N+F+GSGILCD LYKLKLD  FAE+LLT++HNVGTKRG +NESSAY
Subjt:  SISRDLISLSKLDTSSYYFKFVNECFSLFKKNIFIGSGILCDDLYKLKLDNVFAESLLTLYHNVGTKRGQTNESSAY

A0A5A7T3G8 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-13293.85Show/hide
Query:  MFILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGH
        MFILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHS NLM HKG GKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGH
Subjt:  MFILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGH

Query:  YQKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYV
        YQKDCLKRKAWFENKGKHN LVCFESNLTEVPYN WWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVP+EA+ TYRLTLD GHHLDLFD FYV
Subjt:  YQKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYV

Query:  PSISRDLISLSKLDTSSYYFKFVNECFSLFKKNIFIGSGILCDD
        PSISR+LISLSKLDTS YYFK  NECFSLFK+NIFIGSGILCDD
Subjt:  PSISRDLISLSKLDTSSYYFKFVNECFSLFKKNIFIGSGILCDD

A0A5A7V4M3 Copia-like pol polyprotein2.3e-11493.93Show/hide
Query:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY
        FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHS NLMGHKGAGKKPGKKNGKGNH QLKVKQSSAPIHKKGQIKDK RFCNKPGHY
Subjt:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY

Query:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP
        QKDCLKRKAWFENKGKHN LVCFESNLTEVPYN WWIDSGC  HV N MQGFLTTRTTNPNERFIFMGNRVKVP+EAVGTYRLTLD GHHLDLF TFYVP
Subjt:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP

Query:  SISRDLISLSKLDT
        SISR+LISLSKLDT
Subjt:  SISRDLISLSKLDT

A0A5D3BPH8 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-11489.29Show/hide
Query:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY
        FILNSLP +YGPFH+NYN LKDKWNVHELQSMLIQEEARLKKPIIHS NLMGHKGAGKK GKKNGKGNHGQLKVKQSSAPIHKK QIKDKCRFCNKPGHY
Subjt:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY

Query:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP
        QKDCLKRKAWFENKGKHN LVCFESNLTEVPYN WWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGN VKV +EAVGTY LTLD GHHLDLFDTFYVP
Subjt:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP

Query:  SISRDLISLSKLDTSSYYFKFVNE
        S+SR+LISLSKLDTS +     N+
Subjt:  SISRDLISLSKLDTSSYYFKFVNE

A0A5D3C256 Copia-like pol polyprotein6.8e-11995.81Show/hide
Query:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY
        FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHS NLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY
Subjt:  FILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHY

Query:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP
        QKDCLKRKAWFENKGKHN LVCFESNLTEVPYN WWIDSGCTIHVSNTMQGFLTTR TNPNER IFMGNRVKVP+EAVGTYRLTLD GHHLDL+DTFYVP
Subjt:  QKDCLKRKAWFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVP

Query:  SISRDLISLSKLDTS
        SISR+LISLSKLDTS
Subjt:  SISRDLISLSKLDTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTATCCTTAATTCCTTACCTTCAGAGTATGGTCCATTTCACATGAACTATAACACTCTGAAAGATAAATGGAATGTGCATGAATTACAAAGTATGCTCATTCAAGA
GGAAGCGAGGCTTAAGAAACCAATAATTCACTCTGTCAATCTCATGGGTCACAAAGGAGCTGGAAAGAAACCTGGAAAAAAGAATGGCAAGGGCAATCATGGACAATTAA
AGGTAAAACAGTCATCTGCCCCAATCCACAAAAAGGGACAAATTAAGGATAAGTGTCGTTTTTGCAACAAACCAGGACACTATCAAAAAGATTGTCTAAAACGTAAGGCA
TGGTTCGAGAATAAAGGTAAGCATAATACTTTAGTATGTTTTGAATCAAACTTAACTGAAGTTCCTTATAATATATGGTGGATTGATTCTGGTTGTACCATTCATGTTTC
CAATACGATGCAGGGATTCCTTACGACCCGAACCACAAACCCAAATGAAAGATTCATTTTTATGGGAAACAGAGTCAAAGTTCCAATTGAAGCTGTGGGAACCTATCGTT
TAACTTTAGATATTGGACATCATTTAGACCTTTTTGATACCTTTTATGTTCCTTCTATTTCTCGTGATTTGATTTCCTTGTCAAAACTTGATACTTCAAGTTATTACTTT
AAATTTGTGAATGAGTGTTTTAGTTTATTCAAAAAGAATATTTTTATTGGTTCTGGTATTCTTTGTGATGACTTATATAAATTAAAGCTTGATAATGTTTTTGCTGAGAG
TTTATTAACCTTGTATCATAATGTTGGTACTAAACGTGGTCAAACTAATGAATCGTCAGCTTACTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTTATCCTTAATTCCTTACCTTCAGAGTATGGTCCATTTCACATGAACTATAACACTCTGAAAGATAAATGGAATGTGCATGAATTACAAAGTATGCTCATTCAAGA
GGAAGCGAGGCTTAAGAAACCAATAATTCACTCTGTCAATCTCATGGGTCACAAAGGAGCTGGAAAGAAACCTGGAAAAAAGAATGGCAAGGGCAATCATGGACAATTAA
AGGTAAAACAGTCATCTGCCCCAATCCACAAAAAGGGACAAATTAAGGATAAGTGTCGTTTTTGCAACAAACCAGGACACTATCAAAAAGATTGTCTAAAACGTAAGGCA
TGGTTCGAGAATAAAGGTAAGCATAATACTTTAGTATGTTTTGAATCAAACTTAACTGAAGTTCCTTATAATATATGGTGGATTGATTCTGGTTGTACCATTCATGTTTC
CAATACGATGCAGGGATTCCTTACGACCCGAACCACAAACCCAAATGAAAGATTCATTTTTATGGGAAACAGAGTCAAAGTTCCAATTGAAGCTGTGGGAACCTATCGTT
TAACTTTAGATATTGGACATCATTTAGACCTTTTTGATACCTTTTATGTTCCTTCTATTTCTCGTGATTTGATTTCCTTGTCAAAACTTGATACTTCAAGTTATTACTTT
AAATTTGTGAATGAGTGTTTTAGTTTATTCAAAAAGAATATTTTTATTGGTTCTGGTATTCTTTGTGATGACTTATATAAATTAAAGCTTGATAATGTTTTTGCTGAGAG
TTTATTAACCTTGTATCATAATGTTGGTACTAAACGTGGTCAAACTAATGAATCGTCAGCTTACTTTTGA
Protein sequenceShow/hide protein sequence
MFILNSLPSEYGPFHMNYNTLKDKWNVHELQSMLIQEEARLKKPIIHSVNLMGHKGAGKKPGKKNGKGNHGQLKVKQSSAPIHKKGQIKDKCRFCNKPGHYQKDCLKRKA
WFENKGKHNTLVCFESNLTEVPYNIWWIDSGCTIHVSNTMQGFLTTRTTNPNERFIFMGNRVKVPIEAVGTYRLTLDIGHHLDLFDTFYVPSISRDLISLSKLDTSSYYF
KFVNECFSLFKKNIFIGSGILCDDLYKLKLDNVFAESLLTLYHNVGTKRGQTNESSAYF