; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0105261 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0105261
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr04:23391916..23392659
RNA-Seq ExpressionCmc04g0105261
SyntenyCmc04g0105261
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ABI34306.1 Polyprotein, putative [Solanum demissum]4.0e-6955.28Show/hide
Query:  MFKLNLEIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRY
        MFKLN+E++K  +S YML+S N W ARLCH+N R +  MS L LIP +   +FEKC  CS+ KITK  H  V R T+ LEL+H+D+CE  G LTR   RY
Subjt:  MFKLNLEIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRY

Query:  VISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLE
         I+FIDD S +T++YL+KNKSDA++ FK ++ ++ENQF ++IKR+RSDRG EY+S  FN F  S GIIHET  PYSP  NG AERKNRTL EL  A L+E
Subjt:  VISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLE

Query:  SRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR
        S A   + GE I T  YV NR+P   SK +P+E+ K   P+L YLR
Subjt:  SRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR

KAA0034938.1 putative Polyprotein [Cucumis melo var. makuwa]2.2e-12389.07Show/hide
Query:  MFKLNLEIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRY
        MFKLNLEI+KI SS YMLTSFNVW ARLCHVN+RLISNMSRLNLIPKLSLHDFEKCACCSQ KITKTSHK VTRVT+PLELIHSDLCEFDGTLTRNSKRY
Subjt:  MFKLNLEIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRY

Query:  VISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLE
        V++FIDDCSDYTFIYLLKNKSDAY+MFKVF+T+IENQFNKRIKRLRSDRGTEYDS+AFNEFYNSKGIIHET  PYSP+MNGK ERKNRTLTEL VA LLE
Subjt:  VISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLE

Query:  SRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLRT
        S AAP W GE+IKT+NYV NRIPKSNSKTSPYEVLKHK PNLSYLRT
Subjt:  SRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLRT

RVW92065.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.3e-5546.03Show/hide
Query:  MFKLNL------EIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLT
        M+KLN+       ++K  +STYML S N+W  RL HVN   +  +  LN IP   ++   KC  C + K+T++S +SV R TEPL+LIHSD+C+     T
Subjt:  MFKLNL------EIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLT

Query:  RNSKRYVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELV
        R   +Y I+F+DD + Y ++YLLK+K +A + F ++ T++ENQ NK+IK LRSDRG EY+S  F +     GIIHET APYSP+ NG AERKNRTL E++
Subjt:  RNSKRYVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELV

Query:  VATLLESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR
         A L+ S       GE I T NY+ N++PK  ++ +PYE+ K + P+ +YLR
Subjt:  VATLLESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR

RVX00859.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.3e-5546.03Show/hide
Query:  MFKLNL------EIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLT
        M+KLN+       ++K  +STYML S N+W  RL HVN   +  +  LN IP   ++   KC  C + K+T++S +SV R TEPL+LIHSD+C+     T
Subjt:  MFKLNL------EIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLT

Query:  RNSKRYVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELV
        R   +Y I+F+DD + Y ++YLLK+K +A + F ++ T++ENQ NK+IK LRSDRG EY+S  F +     GIIHET APYSP+ NG AERKNRTL E++
Subjt:  RNSKRYVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELV

Query:  VATLLESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR
         A L+ S       GE I T NY+ N++PK  ++ +PYE+ K + P+ +YLR
Subjt:  VATLLESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR

RVX14679.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.3e-5546.03Show/hide
Query:  MFKLNL------EIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLT
        M+KLN+       ++K  +STYML S N+W  RL HVN   +  +  LN IP   ++   KC  C + K+T++S +SV R TEPL+LIHSD+C+     T
Subjt:  MFKLNL------EIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLT

Query:  RNSKRYVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELV
        R   +Y I+F+DD + Y ++YLLK+K +A + F ++ T++ENQ NK+IK LRSDRG EY+S  F +     GIIHET APYSP+ NG AERKNRTL E++
Subjt:  RNSKRYVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELV

Query:  VATLLESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR
         A L+ S       GE I T NY+ N++PK  ++ +PYE+ K + P+ +YLR
Subjt:  VATLLESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR

TrEMBL top hitse value%identityAlignment
A0A5D3DCJ1 Putative Polyprotein1.1e-12389.07Show/hide
Query:  MFKLNLEIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRY
        MFKLNLEI+KI SS YMLTSFNVW ARLCHVN+RLISNMSRLNLIPKLSLHDFEKCACCSQ KITKTSHK VTRVT+PLELIHSDLCEFDGTLTRNSKRY
Subjt:  MFKLNLEIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRY

Query:  VISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLE
        V++FIDDCSDYTFIYLLKNKSDAY+MFKVF+T+IENQFNKRIKRLRSDRGTEYDS+AFNEFYNSKGIIHET  PYSP+MNGK ERKNRTLTEL VA LLE
Subjt:  VISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLE

Query:  SRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLRT
        S AAP W GE+IKT+NYV NRIPKSNSKTSPYEVLKHK PNLSYLRT
Subjt:  SRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLRT

A0A7N2L531 Uncharacterized protein7.0e-7561.54Show/hide
Query:  MFKLNLEIDKI-VSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKR
        MFKLN+E +K   SS YML+S N W ARLCH+N R +  MS L LIP+LS  DFEKC  CSQ KITK  HK+V R TE LELIHSDLCEF+G LTR   R
Subjt:  MFKLNLEIDKI-VSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKR

Query:  YVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLL
        Y+I+FIDD S YT IYLLKNKSDA++ F+ F+ ++ENQF ++IKR+RSDRG EY+S AFN F  S GIIHET APYSP  NG AERKNRTL EL  A L+
Subjt:  YVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLL

Query:  ESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR
        ES A   + GE I T  +V NR+P   S T+P+E+ K   PNL YLR
Subjt:  ESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR

A0A7N2R9F3 Uncharacterized protein7.0e-7561.54Show/hide
Query:  MFKLNLEIDKI-VSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKR
        MFKLN+E +K   SS YML+S N W ARLCH+N R +  MS L LIP+LS  DFEKC  CSQ KITK  HKSV R TE LELIHSDLCEF+G LTR   R
Subjt:  MFKLNLEIDKI-VSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKR

Query:  YVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLL
        Y+I+FIDD S YT IYLLKNKSDA++ F+ F+ ++ENQF ++IKR+RSDRG EY+S AFN F  S GIIHET APYSP  NG  ERKNRTL EL  A L+
Subjt:  YVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLL

Query:  ESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR
        ES A   + GE I T  +V NR+P   S T+P+E+ K   PNL YLR
Subjt:  ESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR

A5AEN5 Uncharacterized protein2.1e-5546.03Show/hide
Query:  MFKLNL------EIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLT
        M+KLN+       ++K  +STYML S N+W  RL HVN   +  +  LN IP   ++   KC  C + K+T++S +SV R TEPL+LIHSD+C+     T
Subjt:  MFKLNL------EIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLT

Query:  RNSKRYVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELV
        R   +Y I+F+DD + Y ++YLLK+K +A + F ++ T++ENQ NK+IK LRSDRG EY+S  F +     GIIHET APYSP+ NG AERKNRTL E++
Subjt:  RNSKRYVISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELV

Query:  VATLLESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR
         A L+ S       GE I T NY+ N++PK  ++ +PYE+ K + P+ +YLR
Subjt:  VATLLESRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR

Q0KIN7 Polyprotein, putative2.0e-6955.28Show/hide
Query:  MFKLNLEIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRY
        MFKLN+E++K  +S YML+S N W ARLCH+N R +  MS L LIP +   +FEKC  CS+ KITK  H  V R T+ LEL+H+D+CE  G LTR   RY
Subjt:  MFKLNLEIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRY

Query:  VISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLE
         I+FIDD S +T++YL+KNKSDA++ FK ++ ++ENQF ++IKR+RSDRG EY+S  FN F  S GIIHET  PYSP  NG AERKNRTL EL  A L+E
Subjt:  VISFIDDCSDYTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLE

Query:  SRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR
        S A   + GE I T  YV NR+P   SK +P+E+ K   P+L YLR
Subjt:  SRAAPCWLGEMIKTLNYVFNRIPKSNSKTSPYEVLKHKTPNLSYLR

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.6e-2932.22Show/hide
Query:  SFNVWDARLCHVN---------RRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSD
        +F +W  R  H++         + + S+ S LN + +LS    E C    Q ++     K  T +  PL ++HSD+C     +T + K Y + F+D  + 
Subjt:  SFNVWDARLCHVN---------RRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSD

Query:  YTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLESRAAPCWLGE
        Y   YL+K KSD + MF+ F+ K E  FN ++  L  D G EY S    +F   KGI +    P++P++NG +ER  RT+TE     +  ++    + GE
Subjt:  YTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLESRAAPCWLGE

Query:  MIKTLNYVFNRIPKS---NSKTSPYEVLKHKTPNLSYLR
         + T  Y+ NRIP     +S  +PYE+  +K P L +LR
Subjt:  MIKTLNYVFNRIPKS---NSKTSPYEVLKHKTPNLSYLR

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.4e-2632.68Show/hide
Query:  SFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHK-SVTRVTEPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSDYTFIYLLK
        S ++W  R+ H++ + +  +++ +LI        + C  C   K  + S + S  R    L+L++SD+C      +    +Y ++FIDD S   ++Y+LK
Subjt:  SFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHK-SVTRVTEPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSDYTFIYLLK

Query:  NKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLESRAAPCWLGEMIKTLNYV
         K   +++F+ F   +E +  +++KRLRSD G EY S  F E+ +S GI HE   P +P+ NG AER NRT+ E V + L  ++    + GE ++T  Y+
Subjt:  NKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLESRAAPCWLGEMIKTLNYV

Query:  FNRIP
         NR P
Subjt:  FNRIP

Q12491 Transposon Ty2-B Gag-Pol polyprotein8.1e-1228.81Show/hide
Query:  LCHVNRRLISNMSRLNLIPKLSLHDFE-------KCACCSQVKITKTSHKSVTRVT-----EPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSDYTFIY
        L H N R I    + N +  L   D E       +C  C   K TK  H   +R+      EP + +H+D+      L +++  Y ISF D+ + + ++Y
Subjt:  LCHVNRRLISNMSRLNLIPKLSLHDFE-------KCACCSQVKITKTSHKSVTRVT-----EPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSDYTFIY

Query:  LL--KNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTL
         L  + +     +F   +  I+NQFN R+  ++ DRG+EY +   ++F+ ++GI          + +G AER NRTL
Subjt:  LL--KNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE17.3e-2132.75Show/hide
Query:  WDARLCH----VNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTS-HKSVTRVTEPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSDYTFIYLLK
        W ARL H    +   +ISN S   L P    H F  C+ C   K  K    +S    T PLE I+SD+      L+ ++ RY + F+D  + YT++Y LK
Subjt:  WDARLCH----VNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTS-HKSVTRVTEPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSDYTFIYLLK

Query:  NKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLESRAAPCWLGEMIKTLNYV
         KS   + F  F   +EN+F  RI    SD G E+  +A  E+++  GI H T  P++P+ NG +ERK+R + E  +  L  +     +         Y+
Subjt:  NKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLESRAAPCWLGEMIKTLNYV

Query:  FNRIPKSNSK-TSPYEVLKHKTPNLSYLR
         NR+P    +  SP++ L   +PN   LR
Subjt:  FNRIPKSNSK-TSPYEVLKHKTPNLSYLR

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE28.0e-2030.13Show/hide
Query:  WDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHK-----SVTRVTEPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSDYTFIYLLK
        W +RL H +  +++++   + +P   L+   K   CS   I K SHK     S    ++PLE I+SD+      L+ ++ RY + F+D  + YT++Y LK
Subjt:  WDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHK-----SVTRVTEPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSDYTFIYLLK

Query:  NKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLESRAAPCWLGEMIKTLNYV
         KS     F +F + +EN+F  RI  L SD G E+  +   ++ +  GI H T  P++P+ NG +ERK+R + E+ +  L  +     +         Y+
Subjt:  NKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLESRAAPCWLGEMIKTLNYV

Query:  FNRIPKSNSK-TSPYEVLKHKTPNLSYLR
         NR+P    +  SP++ L  + PN   L+
Subjt:  FNRIPKSNSK-TSPYEVLKHKTPNLSYLR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCAAATTGAATCTGGAAATTGATAAGATTGTATCTTCTACTTACATGTTGACTTCTTTTAATGTTTGGGATGCTAGACTTTGTCATGTTAATAGAAGATTAATTAG
TAACATGAGTAGGTTAAATCTTATACCTAAGTTATCTCTGCATGATTTTGAGAAATGTGCATGTTGTAGTCAAGTTAAGATAACTAAAACCTCGCATAAGTCTGTAACTA
GAGTAACAGAGCCTTTGGAATTAATTCATTCTGACTTATGTGAATTTGATGGCACTTTAACTAGAAACAGTAAAAGGTATGTAATTAGCTTTATAGATGATTGTTCTGAC
TACACTTTTATTTATCTGCTTAAAAATAAAAGTGATGCATATAAAATGTTCAAAGTCTTTATAACTAAAATAGAGAACCAGTTTAACAAAAGAATTAAGAGACTTCGTAG
TGATAGAGGAACTGAATATGATTCAATTGCTTTCAATGAGTTTTATAACTCAAAAGGAATAATACATGAAACTATTGCGCCTTATTCTCCTAAAATGAATGGAAAAGCAG
AAAGAAAGAATAGAACTCTAACTGAGTTAGTAGTTGCTACCTTACTTGAGTCAAGAGCCGCACCATGTTGGTTGGGTGAAATGATTAAGACTCTTAATTATGTTTTTAAT
AGGATTCCTAAATCAAACAGTAAAACTTCACCATATGAAGTCCTTAAACATAAAACACCAAACTTGTCTTATCTTCGAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCAAATTGAATCTGGAAATTGATAAGATTGTATCTTCTACTTACATGTTGACTTCTTTTAATGTTTGGGATGCTAGACTTTGTCATGTTAATAGAAGATTAATTAG
TAACATGAGTAGGTTAAATCTTATACCTAAGTTATCTCTGCATGATTTTGAGAAATGTGCATGTTGTAGTCAAGTTAAGATAACTAAAACCTCGCATAAGTCTGTAACTA
GAGTAACAGAGCCTTTGGAATTAATTCATTCTGACTTATGTGAATTTGATGGCACTTTAACTAGAAACAGTAAAAGGTATGTAATTAGCTTTATAGATGATTGTTCTGAC
TACACTTTTATTTATCTGCTTAAAAATAAAAGTGATGCATATAAAATGTTCAAAGTCTTTATAACTAAAATAGAGAACCAGTTTAACAAAAGAATTAAGAGACTTCGTAG
TGATAGAGGAACTGAATATGATTCAATTGCTTTCAATGAGTTTTATAACTCAAAAGGAATAATACATGAAACTATTGCGCCTTATTCTCCTAAAATGAATGGAAAAGCAG
AAAGAAAGAATAGAACTCTAACTGAGTTAGTAGTTGCTACCTTACTTGAGTCAAGAGCCGCACCATGTTGGTTGGGTGAAATGATTAAGACTCTTAATTATGTTTTTAAT
AGGATTCCTAAATCAAACAGTAAAACTTCACCATATGAAGTCCTTAAACATAAAACACCAAACTTGTCTTATCTTCGAACTTGA
Protein sequenceShow/hide protein sequence
MFKLNLEIDKIVSSTYMLTSFNVWDARLCHVNRRLISNMSRLNLIPKLSLHDFEKCACCSQVKITKTSHKSVTRVTEPLELIHSDLCEFDGTLTRNSKRYVISFIDDCSD
YTFIYLLKNKSDAYKMFKVFITKIENQFNKRIKRLRSDRGTEYDSIAFNEFYNSKGIIHETIAPYSPKMNGKAERKNRTLTELVVATLLESRAAPCWLGEMIKTLNYVFN
RIPKSNSKTSPYEVLKHKTPNLSYLRT