; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0105351 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0105351
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag/pol protein
Genome locationCMiso1.1chr04:23466942..23467844
RNA-Seq ExpressionCmc04g0105351
SyntenyCmc04g0105351
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008234 - cysteine-type peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035879.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-16699Show/hide
Query:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
        MSLTETLTVISDGDIEDPLTFKK M+DVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
Subjt:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE

Query:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
        TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
Subjt:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY

Query:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRH VTLSKE
Subjt:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-16699Show/hide
Query:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
        MSLTETLTVISDGDIEDPLTFKK M+DVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
Subjt:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE

Query:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
        TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
Subjt:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY

Query:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRH VTLSKE
Subjt:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-16699Show/hide
Query:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
        MSLTETLTVISDGDIEDPLTFKK M+DVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
Subjt:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE

Query:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
        TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
Subjt:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY

Query:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRH VTLSKE
Subjt:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

TYJ97618.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-16699Show/hide
Query:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
        MSLTETLTVISDGDIEDPLTFKK M+DVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
Subjt:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE

Query:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
        TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
Subjt:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY

Query:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRH VTLSKE
Subjt:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-16699Show/hide
Query:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
        MSLTETLTVISDGDIEDPLTFKK M+DVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
Subjt:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE

Query:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
        TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
Subjt:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY

Query:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRH VTLSKE
Subjt:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

TrEMBL top hitse value%identityAlignment
A0A5A7SMH8 Gag/pol protein7.2e-16799Show/hide
Query:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
        MSLTETLTVISDGDIEDPLTFKK M+DVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
Subjt:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE

Query:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
        TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
Subjt:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY

Query:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRH VTLSKE
Subjt:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

A0A5A7TWB9 Gag/pol protein7.2e-16799Show/hide
Query:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
        MSLTETLTVISDGDIEDPLTFKK M+DVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
Subjt:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE

Query:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
        TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
Subjt:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY

Query:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRH VTLSKE
Subjt:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

A0A5D3BHG7 Gag/pol protein7.2e-16799Show/hide
Query:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
        MSLTETLTVISDGDIEDPLTFKK M+DVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
Subjt:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE

Query:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
        TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
Subjt:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY

Query:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRH VTLSKE
Subjt:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

A0A5D3CPJ6 Gag/pol protein7.2e-16799Show/hide
Query:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
        MSLTETLTVISDGDIEDPLTFKK M+DVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
Subjt:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE

Query:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
        TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
Subjt:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY

Query:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRH VTLSKE
Subjt:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

A0A5D3CSZ6 Gag/pol protein7.2e-16799Show/hide
Query:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
        MSLTETLTVISDGDIEDPLTFKK M+DVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE
Subjt:  MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEE

Query:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
        TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY
Subjt:  TFSPVAMLKSIRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY

Query:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRH VTLSKE
Subjt:  KRIINKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.1e-5038.29Show/hide
Query:  PLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSI
        P +F +     DK  W +A+N EL +   N+ W +  +P+    +  +W++  K    G    +KARLVA+G+TQ   +DYEETF+PVA + S R +LS+
Subjt:  PLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSI

Query:  AAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY---KRIINKSVAFLVLY
           ++ ++ QMDVKTAFLNG L+E IYM+ P+G  I      +CKLN++IYGLKQA+R W   F+ A+K   F     + C+Y   K  IN+++ +++LY
Subjt:  AAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY---KRIINKSVAFLVLY

Query:  VDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQN
        VDD+++   D+  + + K++L  +F+M DL E +  +GI+I  + +   + LSQ++Y+ KI+ K++M+N
Subjt:  VDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQN

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.4e-7245.14Show/hide
Query:  DIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRI
        D  +P + K+ +   +K++ +KAM  E+ES+  N  + LV+ P G +P+ CKW++K K+  D K+  +KARLV KG+ Q +G+D++E FSPV  + SIR 
Subjt:  DIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRI

Query:  LLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY-KRIINKSVAFLV
        +LS+AA  D E+ Q+DVKTAFL+G+LEE IYM+QPEGF + G++  +CKLN+S+YGLKQA R W ++FD+ +KS  + +   +PCVY KR    +   L+
Subjt:  LLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVY-KRIINKSVAFLV

Query:  LYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE
        LYVDD+L++G D GL+  +K  L+  F MKDLG AQ +LG++I R+R ++ L LSQ  YI++++ +++M+N+K    P    + LSK+
Subjt:  LYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE

Q12088 Transposon Ty1-LR1 Gag-Pol polyprotein2.8e-1925.52Show/hide
Query:  EDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDL-----VDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKS
        ++ +T+ K++K  +K+++I+A + E+  +     WD        + D  + I   +I+ RKRG      T KAR VA+G      + + +T+ P     +
Subjt:  EDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDL-----VDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKS

Query:  IR-----ILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDT-AIKSYGFDQIVDEPCVYKRII
        +        LS+A+  +Y I Q+D+ +A+L  +++E +Y++ P      G   K+ +L +S+YGLKQ+  +W     +  IK  G +++    CV+K   
Subjt:  IR-----ILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDT-AIKSYGFDQIVDEPCVYKRII

Query:  NKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMK--DLGEAQ-----FVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRG
          S   + L+VDD++L   D+     I   L  Q+  K  +LGE+       +LG++I + ++ K + L   + + + + K ++  + +G
Subjt:  NKSVAFLVLYVDDILLIGNDIGLLTDIKQWLATQFQMK--DLGEAQ-----FVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRG

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.4e-4938.87Show/hide
Query:  DPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDG-VKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILL
        +P T  + +KD   + W  AM  E+ +   N  WDLV  P   V  +GC+WI+ +K  +DG +  +KARLVAKGY Q  G+DY ETFSPV    SIRI+L
Subjt:  DPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDG-VKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILL

Query:  SIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYV
         +A    + I Q+DV  AFL G L + +YM QP GFI   +   +CKL +++YGLKQA R+W +     + + GF   V +  ++     KS+ ++++YV
Subjt:  SIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYV

Query:  DDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLS
        DDIL+ GND  LL +    L+ +F +KD  E  + LGI+    R    L LSQ  YI  ++ + +M  +K    P      LS
Subjt:  DDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.7e-4838.52Show/hide
Query:  DPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLV-DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILL
        +P T  + MKD   D W +AM  E+ +   N  WDLV   P  V  +GC+WI+ +K  +DG +  +KARLVAKGY Q  G+DY ETFSPV    SIRI+L
Subjt:  DPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLV-DQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILL

Query:  SIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYV
         +A    + I Q+DV  AFL G L + +YM QP GF+   +   +C+L ++IYGLKQA R+W +   T + + GF   + +  ++     +S+ ++++YV
Subjt:  SIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYV

Query:  DDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSK
        DDIL+ GND  LL      L+ +F +K+  +  + LGI+    R  + L LSQ  Y   ++ + +M  +K
Subjt:  DDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSK

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.8e-5236.67Show/hide
Query:  WIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKT
        W  AM+ E+ +M     W++   P   KPIGCKW+YK K  +DG ++ +KARLVAKGYTQ EG+D+ ETFSPV  L S++++L+I+A +++ + Q+D+  
Subjt:  WIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILLSIAAYFDYEIWQMDVKT

Query:  AFLNGNLEETIYMQQPEGFIIPGQE----QKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDILLIGNDIGLL
        AFLNG+L+E IYM+ P G+     +      +C L +SIYGLKQASR W ++F   +  +GF Q   +   + +I       +++YVDDI++  N+   +
Subjt:  AFLNGNLEETIYMQQPEGFIIPGQE----QKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDILLIGNDIGLL

Query:  TDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLS
         ++K  L + F+++DLG  ++ LG++I R      + + Q  Y   ++ +  +   K   +P    VT S
Subjt:  TDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLS

ATMG00810.1 DNA/RNA polymerases superfamily protein4.8e-0642.11Show/hide
Query:  FLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSK
        +L+LYVDDILL G+   LL  +   L++ F MKDLG   + LGIQI        L LSQ  Y ++I+    M + K
Subjt:  FLVLYVDDILLIGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSK

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)4.7e-1744.66Show/hide
Query:  TFKKEMKDVD---KDE-WIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILL
        T KKE K V    KD  W +AM  EL+++  N  W LV  P     +GCKW++K K  +DG +   KARLVAKG+ Q EG+ + ET+SPV    +IR +L
Subjt:  TFKKEMKDVD---KDE-WIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKSIRILL

Query:  SIA
        ++A
Subjt:  SIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTAACTGAAACCTTAACTGTCATATCTGATGGCGACATTGAGGATCCATTGACTTTTAAGAAGGAAATGAAGGATGTGGATAAAGATGAATGGATCAAAGCTAT
GAATCTTGAATTGGAGTCTATGTACTTCAATTCGGTCTGGGATCTTGTAGATCAACCTGATGGGGTAAAACCTATAGGTTGTAAATGGATCTACAAGAGAAAAAGAGGTG
CAGATGGTAAGGTACAAACTTTTAAAGCTAGACTAGTGGCAAAGGGTTATACCCAAGTTGAGGGAGTTGACTATGAGGAGACTTTCTCACCTGTTGCCATGTTAAAGTCT
ATTCGAATACTTTTGTCCATTGCTGCATATTTTGACTATGAGATTTGGCAAATGGATGTAAAGACTGCCTTTTTGAATGGCAATCTTGAGGAGACCATCTATATGCAACA
ACCAGAAGGATTCATAATTCCAGGTCAAGAGCAAAAGATTTGCAAGCTTAATCGTTCTATTTATGGATTAAAACAAGCTTCTCGATCTTGGAACATAAGATTTGATACCG
CAATAAAATCTTATGGATTTGATCAAATCGTTGATGAACCTTGTGTCTACAAAAGAATCATCAACAAATCAGTAGCTTTCTTAGTTTTGTACGTAGATGATATCCTGCTC
ATTGGGAATGATATAGGTTTACTAACTGACATCAAACAATGGCTAGCAACCCAATTTCAAATGAAAGATTTGGGAGAGGCACAATTTGTTCTGGGTATTCAGATCTTTAG
AGATCGTAAGAACAAAATGCTAGCTTTGTCTCAAGCATCGTATATTGATAAAATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATG
AAGTTACTTTGTCTAAGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTAACTGAAACCTTAACTGTCATATCTGATGGCGACATTGAGGATCCATTGACTTTTAAGAAGGAAATGAAGGATGTGGATAAAGATGAATGGATCAAAGCTAT
GAATCTTGAATTGGAGTCTATGTACTTCAATTCGGTCTGGGATCTTGTAGATCAACCTGATGGGGTAAAACCTATAGGTTGTAAATGGATCTACAAGAGAAAAAGAGGTG
CAGATGGTAAGGTACAAACTTTTAAAGCTAGACTAGTGGCAAAGGGTTATACCCAAGTTGAGGGAGTTGACTATGAGGAGACTTTCTCACCTGTTGCCATGTTAAAGTCT
ATTCGAATACTTTTGTCCATTGCTGCATATTTTGACTATGAGATTTGGCAAATGGATGTAAAGACTGCCTTTTTGAATGGCAATCTTGAGGAGACCATCTATATGCAACA
ACCAGAAGGATTCATAATTCCAGGTCAAGAGCAAAAGATTTGCAAGCTTAATCGTTCTATTTATGGATTAAAACAAGCTTCTCGATCTTGGAACATAAGATTTGATACCG
CAATAAAATCTTATGGATTTGATCAAATCGTTGATGAACCTTGTGTCTACAAAAGAATCATCAACAAATCAGTAGCTTTCTTAGTTTTGTACGTAGATGATATCCTGCTC
ATTGGGAATGATATAGGTTTACTAACTGACATCAAACAATGGCTAGCAACCCAATTTCAAATGAAAGATTTGGGAGAGGCACAATTTGTTCTGGGTATTCAGATCTTTAG
AGATCGTAAGAACAAAATGCTAGCTTTGTCTCAAGCATCGTATATTGATAAAATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGGCTTACTACCTTTCAGGCATG
AAGTTACTTTGTCTAAGGAATAG
Protein sequenceShow/hide protein sequence
MSLTETLTVISDGDIEDPLTFKKEMKDVDKDEWIKAMNLELESMYFNSVWDLVDQPDGVKPIGCKWIYKRKRGADGKVQTFKARLVAKGYTQVEGVDYEETFSPVAMLKS
IRILLSIAAYFDYEIWQMDVKTAFLNGNLEETIYMQQPEGFIIPGQEQKICKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQIVDEPCVYKRIINKSVAFLVLYVDDILL
IGNDIGLLTDIKQWLATQFQMKDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHEVTLSKE