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Cmc04g0105671 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0105671
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr04:23677432..23679055
RNA-Seq ExpressionCmc04g0105671
SyntenyCmc04g0105671
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045109.1 putative mitochondrial protein [Cucumis melo var. makuwa]7.9e-3863.77Show/hide
Query:  VGNSTKEIDSLI---NSE--------------VEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKSVVSALQY
        +GNS K ++ LI   NSE              VEV YP  GG+FLSQ+KYI DLLQKTKMF+AKPI+TPMVSG + +SAHQGE F DI+LY+  V ALQY
Subjt:  VGNSTKEIDSLI---NSE--------------VEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKSVVSALQY

Query:  ATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
        ATLTHP+ISY VNK CQFMHSP+L HWQL+ RIL YLK
Subjt:  ATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

KAA0052371.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.9e-4462.18Show/hide
Query:  MTTNSCCYVSIYVDDLIIVGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQG
        +T  SCCY  IYVDDLII+G+S K+++SL++S                  VEV YP  G LFLSQSKYI DLLQ+TKM +AKPI+TPMVSGP+ LSA QG
Subjt:  MTTNSCCYVSIYVDDLIIVGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQG

Query:  EQFSDIYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
        E F D++L +SVV ALQYATLTHP+ISY VNK CQFMH+P+ THWQL+ RIL YLK
Subjt:  EQFSDIYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

KAA0057506.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.3e-3762.76Show/hide
Query:  YVDDLIIVGNSTKEIDSLI---NSE--------------VEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKS
        YVDDLII+G S K ++ LI   NSE              VEV YP   G+ LSQ+KYI DLLQK KMF+AKPI+TPMVSG + +SAH GE F DI LY+S
Subjt:  YVDDLIIVGNSTKEIDSLI---NSE--------------VEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKS

Query:  VVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
         V ALQYATLTHP ISY VNK CQFMHSP+L HWQL+ RIL YLK
Subjt:  VVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

XP_016903397.1 PREDICTED: uncharacterized mitochondrial protein AtMg00810-like [Cucumis melo]3.0e-3760.87Show/hide
Query:  VGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKSVVSALQY
        +GNS K ++SL++S                 EVEV YP  GGLFLSQSKYI DLLQ+TKM +AKPI+T MVSGP+ LSA QGE F D++LY+S+V ALQY
Subjt:  VGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKSVVSALQY

Query:  ATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
        ATLTHP+ISY VNK CQF+H+P+ THWQL+ +IL YLK
Subjt:  ATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

XP_022153320.1 uncharacterized protein LOC111020844 [Momordica charantia]2.8e-3552.26Show/hide
Query:  TTNSCCYVSIYVDDLIIVGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGE
        T++ CCY+ +YVDD++I  + T  I  LI++                  +EV  P +GGLFLSQSKYI+DLL K +M EA  I+TPMVSGP+ LSA QG+
Subjt:  TTNSCCYVSIYVDDLIIVGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGE

Query:  QFSDIYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
        +F D++ Y+ +V ALQYATLT P IS+ +NK CQ MHSP L HWQL+ RIL YLK
Subjt:  QFSDIYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

TrEMBL top hitse value%identityAlignment
A0A1S4E598 uncharacterized mitochondrial protein AtMg00810-like1.5e-3760.87Show/hide
Query:  VGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKSVVSALQY
        +GNS K ++SL++S                 EVEV YP  GGLFLSQSKYI DLLQ+TKM +AKPI+T MVSGP+ LSA QGE F D++LY+S+V ALQY
Subjt:  VGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKSVVSALQY

Query:  ATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
        ATLTHP+ISY VNK CQF+H+P+ THWQL+ +IL YLK
Subjt:  ATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

A0A5A7UFS3 Putative mitochondrial protein9.4e-4562.18Show/hide
Query:  MTTNSCCYVSIYVDDLIIVGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQG
        +T  SCCY  IYVDDLII+G+S K+++SL++S                  VEV YP  G LFLSQSKYI DLLQ+TKM +AKPI+TPMVSGP+ LSA QG
Subjt:  MTTNSCCYVSIYVDDLIIVGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQG

Query:  EQFSDIYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
        E F D++L +SVV ALQYATLTHP+ISY VNK CQFMH+P+ THWQL+ RIL YLK
Subjt:  EQFSDIYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

A0A5A7UTP6 Putative mitochondrial protein6.5e-3862.76Show/hide
Query:  YVDDLIIVGNSTKEIDSLI---NSE--------------VEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKS
        YVDDLII+G S K ++ LI   NSE              VEV YP   G+ LSQ+KYI DLLQK KMF+AKPI+TPMVSG + +SAH GE F DI LY+S
Subjt:  YVDDLIIVGNSTKEIDSLI---NSE--------------VEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKS

Query:  VVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
         V ALQYATLTHP ISY VNK CQFMHSP+L HWQL+ RIL YLK
Subjt:  VVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

A0A5D3DK36 Putative mitochondrial protein3.8e-3863.77Show/hide
Query:  VGNSTKEIDSLI---NSE--------------VEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKSVVSALQY
        +GNS K ++ LI   NSE              VEV YP  GG+FLSQ+KYI DLLQKTKMF+AKPI+TPMVSG + +SAHQGE F DI+LY+  V ALQY
Subjt:  VGNSTKEIDSLI---NSE--------------VEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKSVVSALQY

Query:  ATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
        ATLTHP+ISY VNK CQFMHSP+L HWQL+ RIL YLK
Subjt:  ATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

A0A6J1DGH4 uncharacterized protein LOC1110208441.4e-3552.26Show/hide
Query:  TTNSCCYVSIYVDDLIIVGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGE
        T++ CCY+ +YVDD++I  + T  I  LI++                  +EV  P +GGLFLSQSKYI+DLL K +M EA  I+TPMVSGP+ LSA QG+
Subjt:  TTNSCCYVSIYVDDLIIVGNSTKEIDSLINS-----------------EVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGE

Query:  QFSDIYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
        +F D++ Y+ +V ALQYATLT P IS+ +NK CQ MHSP L HWQL+ RIL YLK
Subjt:  QFSDIYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-948.9e-0830.43Show/hide
Query:  NSCCYVSIYVDDLIIVGNSTKEIDSLINS-----EVEVFYPAK-------------GGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQ---
        N+   + +YVDD++IVG     I  L        +++   PA+               L+LSQ KYI  +L++  M  AKP++TP+ +G + LS      
Subjt:  NSCCYVSIYVDDLIIVGNSTKEIDSLINS-----EVEVFYPAK-------------GGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQ---

Query:  -GEQFSDI--YLYKSVVSALQYATL-THPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
          E+  ++    Y S V +L YA + T P I++ V  V +F+ +P   HW+ +  IL YL+
Subjt:  -GEQFSDI--YLYKSVVSALQYATL-THPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

P92519 Uncharacterized mitochondrial protein AtMg008102.7e-1737.09Show/hide
Query:  YVSIYVDDLIIVGNSTKEIDSLINSEVEVF------------------YPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFL-SAHQGEQFSD
        Y+ +YVDD+++ G+S   ++ LI      F                  +P+  GLFLSQ+KY   +L    M + KP++TP+   P+ L S+    ++ D
Subjt:  YVSIYVDDLIIVGNSTKEIDSLINSEVEVF------------------YPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFL-SAHQGEQFSD

Query:  IYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
           ++S+V ALQY TLT P ISY VN VCQ MH P L  + L+ R+L Y+K
Subjt:  IYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE19.1e-2140Show/hide
Query:  SCCYVSIYVDDLIIVGNST----KEIDSL-----INSEVEVFY-------PAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSD
        S  Y+ +YVDD++I GN        +D+L     +    E+ Y           GL LSQ +YI+DLL +T M  AKP+ TPM   P  LS + G + +D
Subjt:  SCCYVSIYVDDLIIVGNST----KEIDSL-----INSEVEVFY-------PAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSD

Query:  IYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYL
           Y+ +V +LQY   T P ISY VN++ QFMH P   H Q + RIL YL
Subjt:  IYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.4e-2138Show/hide
Query:  SCCYVSIYVDDLIIVGNST----KEIDSL-----INSEVEVFY-------PAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSD
        S  Y+ +YVDD++I GN T      +D+L     +    ++ Y           GL LSQ +Y +DLL +T M  AKP+ATPM + P  L+ H G +  D
Subjt:  SCCYVSIYVDDLIIVGNST----KEIDSL-----INSEVEVFY-------PAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSD

Query:  IYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYL
           Y+ +V +LQY   T P +SY VN++ Q+MH P   HW  + R+L YL
Subjt:  IYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYL

Arabidopsis top hitse value%identityAlignment
ATMG00810.1 DNA/RNA polymerases superfamily protein2.0e-1837.09Show/hide
Query:  YVSIYVDDLIIVGNSTKEIDSLINSEVEVF------------------YPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFL-SAHQGEQFSD
        Y+ +YVDD+++ G+S   ++ LI      F                  +P+  GLFLSQ+KY   +L    M + KP++TP+   P+ L S+    ++ D
Subjt:  YVSIYVDDLIIVGNSTKEIDSLINSEVEVF------------------YPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFL-SAHQGEQFSD

Query:  IYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK
           ++S+V ALQY TLT P ISY VN VCQ MH P L  + L+ R+L Y+K
Subjt:  IYLYKSVVSALQYATLTHPKISYGVNKVCQFMHSPQLTHWQLITRILLYLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCACTAATTCTTGTTGCTATGTATCGATTTATGTTGATGATCTTATTATTGTGGGCAACTCCACCAAAGAAATAGATTCTCTTATAAATTCGGAAGTTGAAGTCTT
CTATCCAGCCAAAGGAGGTTTATTTCTTTCCCAGTCAAAATACATAATTGACCTGTTACAGAAAACTAAAATGTTTGAGGCTAAACCAATTGCAACCCCAATGGTAAGTG
GTCCTATCTTCTTGTCTGCACATCAAGGTGAGCAATTTTCTGATATCTACTTGTATAAAAGTGTGGTTAGTGCTTTACAATATGCCACACTTACTCATCCTAAAATCTCT
TACGGTGTAAATAAGGTATGTCAATTTATGCATTCGCCTCAACTGACTCACTGGCAACTTATAACAAGGATACTACTGTATCTGAAATGA
mRNA sequenceShow/hide mRNA sequence
GCTGGTTGCAAAAAGGTTTTATCAAGACACCTAATATTGATTATAATGAAATATCTAGTCCGGTGGTCAATATTGTGACTATATATATGCTCTTAGCCATAGCAGCTATG
AAAGGTTGGTCAATACGACAACTTGATGTCAATAATGCGTTTCTTCACGTAAACCTCTTAGAAAATATTTGTATGGAACAACCTTTTGGTTTTGAGGTGCATAGTAGTTA
GCCTATGGTTTGTCACCTAAAGAAGGCTTTCATATGGTTTAAAACAAGTCCCTAGCGCGTGTTATGAGAAACTAAGCTGCACTTTAAACTTACTTGGCTTCAGAACATCT
AAAGCTGGCTCATCTCTATTAGTTCGCATGACCACTAATTCTTGTTGCTATGTATCGATTTATGTTGATGATCTTATTATTGTGGGCAACTCCACCAAAGAAATAGATTC
TCTTATAAATTCGGAAGTTGAAGTCTTCTATCCAGCCAAAGGAGGTTTATTTCTTTCCCAGTCAAAATACATAATTGACCTGTTACAGAAAACTAAAATGTTTGAGGCTA
AACCAATTGCAACCCCAATGGTAAGTGGTCCTATCTTCTTGTCTGCACATCAAGGTGAGCAATTTTCTGATATCTACTTGTATAAAAGTGTGGTTAGTGCTTTACAATAT
GCCACACTTACTCATCCTAAAATCTCTTACGGTGTAAATAAGGTATGTCAATTTATGCATTCGCCTCAACTGACTCACTGGCAACTTATAACAAGGATACTACTGTATCT
GAAATGAGTTATATCTCTAATAACTTGAATTTACTAGGCTTTGCAAATGCTGGTTGGGCCTCTAGACGACAGAAAGTTCACTTCTTGATATTGTGTTTACTTTATCCTCC
TGTTATGTGGTGTGACAACTTAATCGCAGTTCATTTGAGTGCCAATCCTATACCACATCCCAAGACTAAACATGTTGAACTTGACATTTACTTTGTTCGGGAACTTATAC
GAAACCAGAAACTGTTAGTCCGACACCTTCAAGCTTCTAAATAGATTGCTGACGTTCTAACCAAACCTTTGTTTGCTACCAGTATTCACAAACTCAAAAAGAAATTGACT
GTATTAAGAGATAGCCCATTATACACAAAGGCCCATCTTCTAGAATTTATTTTTACCTTGTATTAATCCAATGTGGGTGTGTTCATTGCAAGAGTTTGTCATCCCTGCTT
TTCTACTTATATGATGATTCTTGCCAATATCAAATAATAAGGAAAAGTAGTATTTTCTCTTTAATATAGAAACTTTAACAGATACACAGAACAGAAGTTTAAAAGTAATA
ACAAAATCTACGTTAAACTTTAATCTCCTGAAGAATTCAAATAAGGAGAAATGAAGGGAAAGAAGAATGAATTGGAAGGAAAAGGAATTCCTCAGAAGGCCTAGCATCTA
CCTGGAATTTGATGGAGAAAACTGGTTCCTCGACCTCAGCAAGAATAAGCATCGGGAGCGCCAGTTATGGATGAAACCTCCATTCTCCATTTTTCTCAGATTACTAAACT
TTTCATCATCGGAAAACTTAATCTCCCCCAATGCGGTGTGGAGTAGATCTCAAAACTTCCTTTCACCTCAATATATTAGGGCTC
Protein sequenceShow/hide protein sequence
MTTNSCCYVSIYVDDLIIVGNSTKEIDSLINSEVEVFYPAKGGLFLSQSKYIIDLLQKTKMFEAKPIATPMVSGPIFLSAHQGEQFSDIYLYKSVVSALQYATLTHPKIS
YGVNKVCQFMHSPQLTHWQLITRILLYLK