CuGenDBv2

Gene ID	Cmc04g0106191
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr04:24127576..24128629
RNA-Seq Expression	Cmc04g0106191
Synteny	Cmc04g0106191
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR036875 - Zinc finger, CCHC-type superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.2e-170

96.37

Show/hide

Query:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS
        MSSTSSLLGVENTEASSPINQIFGSGNKISLVKL+DD FLLWKFQILTALEAYDLENFLESES+PPSKYLIST SSSASAT TPNPAYKVWKRQDRLISS
Subjt:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS

Query:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
        WLLGSMSEEILNQMLHCKSAKEIW TLQGIFSSRYLAQAMQFKNKLHNIKK SMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
Subjt:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV

Query:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGGRGNRNKPQCQICTKLGHSAD
        ISART+SPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRG RGNRNKPQCQIC KLG+SAD
Subjt:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGGRGNRNKPQCQICTKLGHSAD

Query:  RCFFRYTLRSNSSGYSPNSHNTSYTNMNNHP
        RCFFRYT RSNSSGYSPNSHNTSYTNMNNHP
Subjt:  RCFFRYTLRSNSSGYSPNSHNTSYTNMNNHP

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

1.2e-119

87.97

Show/hide

Query:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS
        MSS SS LGVENTE S     IFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENF ESE +PPSKYL STGSSS SATRTPNP YKVWKR +RLIS 
Subjt:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS

Query:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
        WLLGSMSEEILNQM+HCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKK SM LKEYFLKI QCVDALASINKPVSSDDHILYIL GLG DYQSMIS+
Subjt:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV

Query:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYN
        ISART+SPS+QEVMSLLLTQESQNESKLISETALP V IVTQTTEKGAESYIR +QNNYHN+H YN
Subjt:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYN

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

5.7e-103

95.24

Show/hide

Query:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS
        MSSTSSLLGVENTEASSPINQIFGS NKISLVKLSDDNFLLWKFQILTALEAYDLENFLESES+PPSKYLISTGSSSASATRTPNP YKVWKRQDRLISS
Subjt:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS

Query:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
        WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAM+FKNKLHNIKKESMPLKEYFLKI   VDALASINKPVSSDDHILYILAGLGSDYQSMISV
Subjt:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV

Query:  ISARTNSPSV
        I  RT SPSV
Subjt:  ISARTNSPSV

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.2e-170

96.37

Show/hide

Query:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS
        MSSTSSLLGVENTEASSPINQIFGSGNKISLVKL+DD FLLWKFQILTALEAYDLENFLESES+PPSKYLIST SSSASAT TPNPAYKVWKRQDRLISS
Subjt:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS

Query:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
        WLLGSMSEEILNQMLHCKSAKEIW TLQGIFSSRYLAQAMQFKNKLHNIKK SMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
Subjt:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV

Query:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGGRGNRNKPQCQICTKLGHSAD
        ISART+SPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRG RGNRNKPQCQIC KLG+SAD
Subjt:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGGRGNRNKPQCQICTKLGHSAD

Query:  RCFFRYTLRSNSSGYSPNSHNTSYTNMNNHP
        RCFFRYT RSNSSGYSPNSHNTSYTNMNNHP
Subjt:  RCFFRYTLRSNSSGYSPNSHNTSYTNMNNHP

TYK18917.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]

1.0e-99

96.5

Show/hide

Query:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS
        MSSTSSLLGVENTEASSPINQIFGS NKISLVKLSDDNFLLWKFQILTALEAYDLENFLESES+PPSKYLISTGSSSASATRTPNP YKVWKRQDRLISS
Subjt:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS

Query:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
        WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAM+FKNKLHNIKKESMPLKEYFLKI   VDALASINKPVSSDDHILYILAGLGSDYQSMISV
Subjt:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-170

96.37

Show/hide

Query:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS
        MSSTSSLLGVENTEASSPINQIFGSGNKISLVKL+DD FLLWKFQILTALEAYDLENFLESES+PPSKYLIST SSSASAT TPNPAYKVWKRQDRLISS
Subjt:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS

Query:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
        WLLGSMSEEILNQMLHCKSAKEIW TLQGIFSSRYLAQAMQFKNKLHNIKK SMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
Subjt:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV

Query:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGGRGNRNKPQCQICTKLGHSAD
        ISART+SPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRG RGNRNKPQCQIC KLG+SAD
Subjt:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGGRGNRNKPQCQICTKLGHSAD

Query:  RCFFRYTLRSNSSGYSPNSHNTSYTNMNNHP
        RCFFRYT RSNSSGYSPNSHNTSYTNMNNHP
Subjt:  RCFFRYTLRSNSSGYSPNSHNTSYTNMNNHP

A0A5A7UB21 Keratin, type II cytoskeletal 1-like

5.6e-120

87.97

Show/hide

Query:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS
        MSS SS LGVENTE S     IFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENF ESE +PPSKYL STGSSS SATRTPNP YKVWKR +RLIS 
Subjt:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS

Query:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
        WLLGSMSEEILNQM+HCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKK SM LKEYFLKI QCVDALASINKPVSSDDHILYIL GLG DYQSMIS+
Subjt:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV

Query:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYN
        ISART+SPS+QEVMSLLLTQESQNESKLISETALP V IVTQTTEKGAESYIR +QNNYHN+H YN
Subjt:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYN

A0A5A7VGJ8 Keratin, type II cytoskeletal 1-like

2.8e-103

95.24

Show/hide

Query:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS
        MSSTSSLLGVENTEASSPINQIFGS NKISLVKLSDDNFLLWKFQILTALEAYDLENFLESES+PPSKYLISTGSSSASATRTPNP YKVWKRQDRLISS
Subjt:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS

Query:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
        WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAM+FKNKLHNIKKESMPLKEYFLKI   VDALASINKPVSSDDHILYILAGLGSDYQSMISV
Subjt:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV

Query:  ISARTNSPSV
        I  RT SPSV
Subjt:  ISARTNSPSV

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-170

96.37

Show/hide

Query:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS
        MSSTSSLLGVENTEASSPINQIFGSGNKISLVKL+DD FLLWKFQILTALEAYDLENFLESES+PPSKYLIST SSSASAT TPNPAYKVWKRQDRLISS
Subjt:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS

Query:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
        WLLGSMSEEILNQMLHCKSAKEIW TLQGIFSSRYLAQAMQFKNKLHNIKK SMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
Subjt:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV

Query:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGGRGNRNKPQCQICTKLGHSAD
        ISART+SPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRG RGNRNKPQCQIC KLG+SAD
Subjt:  ISARTNSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGGRGNRNKPQCQICTKLGHSAD

Query:  RCFFRYTLRSNSSGYSPNSHNTSYTNMNNHP
        RCFFRYT RSNSSGYSPNSHNTSYTNMNNHP
Subjt:  RCFFRYTLRSNSSGYSPNSHNTSYTNMNNHP

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like

4.9e-100

96.5

Show/hide

Query:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS
        MSSTSSLLGVENTEASSPINQIFGS NKISLVKLSDDNFLLWKFQILTALEAYDLENFLESES+PPSKYLISTGSSSASATRTPNP YKVWKRQDRLISS
Subjt:  MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISS

Query:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV
        WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAM+FKNKLHNIKKESMPLKEYFLKI   VDALASINKPVSSDDHILYILAGLGSDYQSMISV
Subjt:  WLLGSMSEEILNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISV

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

3.0e-22

28.25

Show/hide

Query:  NKISLVKLSDDNFLLWKFQILTALEAYDLENFLE-SESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWG
        N  ++ KL+  N+L+W  Q+    + Y+L  FL+ S + PP+    + G+ +A      NP Y  WKRQD+LI S +LG++S  +   +    +A +IW 
Subjt:  NKISLVKLSDDNFLLWKFQILTALEAYDLENFLE-SESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWG

Query:  TLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTNSPSVQEVMSLLLTQESQNE
        TL+ I+++       Q + +L    K +  + +Y   ++   D LA + KP+  D+ +  +L  L  +Y+ +I  I+A+   P++ E+   LL  ES+  
Subjt:  TLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTNSPSVQEVMSLLLTQESQNE

Query:  SKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGR------SNRGGRGNRNKP---QCQICTKLGHSADRCFFRYTLRSNSSGYS
        + + S T +P    +T        +    N NN + N+ Y+ R    N +      +N     N++KP   +CQIC   GHSA RC       S+ +   
Subjt:  SKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGR------SNRGGRGNRNKP---QCQICTKLGHSADRCFFRYTLRSNSSGYS

Query:  PNSHNTSY
        P S  T +
Subjt:  PNSHNTSY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

8.8e-22

28.27

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Query:  NKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGT
        N  ++ KL+  N+L+W  Q+    + Y+L  FL+  +  P        +    A    NP Y  W+RQD+LI S +LG++S  +   +    +A +IW T
Subjt:  NKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGT

Query:  LQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTNSPSVQEVMSLLLTQESQNES
        L+ I+++       Q                   L+ +   D LA + KP+  D+ +  +L  L  DY+ +I  I+A+   PS+ E+   L+ +ES+  +
Subjt:  LQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTNSPSVQEVMSLLLTQESQNES

Query:  KLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNG--RSNRGGRGNRNKP-----QCQICTKLGHSADRC
           +E    + N+VT        +    NQNN  +N +YN    R N    S+ G R +  +P     +CQIC+  GHSA RC
Subjt:  KLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNG--RSNRGGRGNRNKP-----QCQICTKLGHSADRC

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

2.8e-07

21.32

Show/hide

Query:  SLVKLS--DDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTL
        S+ KLS  +DN++ WK +  + L       F++     P  +               +P Y+ W++ + ++  WL+ SM++++L  +++ ++A ++W  L
Subjt:  SLVKLS--DDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWGTL

Query:  QGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKI
        + +F      +  Q + +L  +++    ++EYF K+
Subjt:  QGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKI

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

2.8e-07

20.66

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Query:  QIFGSGNKIS----LVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISSWLLGSMS-EEILNQML
        QI+G  N  S    ++ + + N+  W+   LT   ++D+   ++         L+ T ++  +           W+++D ++   L G+++ ++     +
Subjt:  QIFGSGNKIS----LVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISSWLLGSMS-EEILNQML

Query:  HCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTNSPSVQEVMS
           ++++IW  ++  F +   A+A++  ++L       M + +Y+ K+ +  D+L +++ PV+  + ++Y+L GL   + ++I+VI  R   PS  +  +
Subjt:  HCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTNSPSVQEVMS

Query:  LLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNR--GGRGNR
        +L     Q E   +     P+   V  ++     +               NQ G RG GR N    GRG R
Subjt:  LLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNR--GGRGNR

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.0e-17

29.96

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Query:  GSSSASATRTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCK-SAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALAS
        G    S+T TP    K WK +D L+  W+ G++++ +L+ ++    +A+++W +L+ +F     A+A+QF+N+L     + + + EY  K+    D L +
Subjt:  GSSSASATRTPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCK-SAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALAS

Query:  INKPVSSDDHILYILAGLGSDYQSMISVISARTNSPSVQEVMSLLLTQESQ--NESK-LISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHS-----
        ++ P+S    ++++L GL   Y  +++VI  ++  PS  E  S+LL +ES+  N+SK  +S T  PS++ V  T  +  E Y       YHNN+S     
Subjt:  INKPVSSDDHILYILAGLGSDYQSMISVISARTNSPSVQEVMSLLLTQESQ--NESK-LISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHS-----

Query:  ----YNQRGGRGNGRSNRGGRGNRNKP
             N+ GG  +GR N       N+P
Subjt:  ----YNQRGGRGNGRSNRGGRGNRNKP

Sequences

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CDS sequence

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ATGAGTTCAACCTCATCCCTACTCGGTGTTGAGAACACTGAAGCATCTTCACCGATTAATCAAATATTTGGATCGGGCAACAAAATATCGTTAGTGAAGCTCAGCGATGA
TAATTTTCTCTTATGGAAGTTCCAAATTCTTACAGCATTAGAAGCTTATGATCTGGAAAATTTTCTTGAATCTGAATCAAAACCACCATCAAAATATCTCATATCCACTG
GGAGTTCATCAGCATCCGCTACTAGAACACCAAATCCGGCATATAAGGTATGGAAACGCCAAGATCGCCTTATCTCCTCATGGCTTTTAGGATCTATGAGTGAAGAAATA
TTGAATCAGATGCTTCATTGCAAATCTGCAAAAGAAATTTGGGGAACTCTTCAAGGTATTTTCTCTTCCCGTTACTTGGCACAAGCTATGCAATTCAAAAACAAACTTCA
CAATATAAAGAAAGAATCCATGCCATTAAAAGAATACTTTCTCAAAATACTGCAGTGTGTTGATGCCTTGGCTTCAATTAACAAACCAGTTTCATCTGATGATCATATTC
TGTACATATTGGCTGGTTTAGGATCTGATTATCAATCCATGATATCTGTTATTTCCGCCAGAACTAACTCTCCTTCTGTACAAGAAGTTATGTCTTTATTACTTACTCAG
GAATCTCAAAATGAGAGCAAATTAATCAGCGAAACTGCTCTACCTTCTGTTAATATTGTCACCCAAACAACTGAAAAAGGAGCAGAATCTTACATAAGGACCAACCAAAA
CAACTATCACAACAATCATTCCTACAATCAAAGGGGTGGCCGTGGCAATGGAAGATCAAACAGGGGAGGAAGAGGAAATCGTAATAAACCACAATGCCAAATCTGTACAA
AGCTTGGACATAGTGCTGATCGCTGCTTCTTTCGATATACTCTAAGATCAAATTCATCAGGTTACTCACCGAACTCACATAATACTTCATATACTAATATGAATAATCAT
CCATAG

mRNA sequence

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Protein sequence

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MSSTSSLLGVENTEASSPINQIFGSGNKISLVKLSDDNFLLWKFQILTALEAYDLENFLESESKPPSKYLISTGSSSASATRTPNPAYKVWKRQDRLISSWLLGSMSEEI
LNQMLHCKSAKEIWGTLQGIFSSRYLAQAMQFKNKLHNIKKESMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQSMISVISARTNSPSVQEVMSLLLTQ
ESQNESKLISETALPSVNIVTQTTEKGAESYIRTNQNNYHNNHSYNQRGGRGNGRSNRGGRGNRNKPQCQICTKLGHSADRCFFRYTLRSNSSGYSPNSHNTSYTNMNNH
P

Cmc04g0106191 (gene) of Melon (Charmono) v1.1 genome