CuGenDBv2

Gene ID	Cmc04g0106281
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr04:24243043..24243387
RNA-Seq Expression	Cmc04g0106281
Synteny	Cmc04g0106281
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

4.2e-53

94.64

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Query:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV
        MLVYGAKDL LTGYTDSDFQTDKDSRKSTSGSVFTLNGG VVWRSIKQGCIADS MEAEYVAACEAAK+AVWLRKFLHDLEVVPNMNLP TLYCDNSGAV
Subjt:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV

Query:  ANSKEPHSHKRG
        ANSKEP SHKRG
Subjt:  ANSKEPHSHKRG

KAA0032998.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

4.6e-52

91.89

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Query:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV
        MLVYGAKDL LTGYTD DFQTDKDS+KSTSGSVFTLNGGVVVWRSI+QGCIADS MEAEYVAACEAAK+AVWLRKFLHDLEVVPNMNLP T+YCDNSGA+
Subjt:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV

Query:  ANSKEPHSHKR
        ANSKEPHSHKR
Subjt:  ANSKEPHSHKR

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

4.2e-53

94.64

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Query:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV
        MLVYGAKDL LTGYTDSDFQTDKDSRKSTSGSVFTLNGG VVWRSIKQGCIADS MEAEYVAACEAAK+AVWLRKFLHDLEVVPNMNLP TLYCDNSGAV
Subjt:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV

Query:  ANSKEPHSHKRG
        ANSKEP SHKRG
Subjt:  ANSKEPHSHKRG

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

4.2e-53

94.64

Show/hide

Query:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV
        MLVYGAKDL LTGYTDSDFQTDKDSRKSTSGSVFTLNGG VVWRSIKQGCIADS MEAEYVAACEAAK+AVWLRKFLHDLEVVPNMNLP TLYCDNSGAV
Subjt:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV

Query:  ANSKEPHSHKRG
        ANSKEP SHKRG
Subjt:  ANSKEPHSHKRG

KAA0061170.1 gag/pol protein [Cucumis melo var. makuwa]

3.5e-52

93.75

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Query:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV
        MLVYGAKDL LTGYTDSDFQTDKDSRKSTSGSVFTLN G VVWRSIKQGCIADS MEAEYVAACEAAK+AVWLRKFLHDLEVVPNMNLP TLYCDNSGAV
Subjt:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV

Query:  ANSKEPHSHKRG
        ANSKEP SHKRG
Subjt:  ANSKEPHSHKRG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKM4 Gag/pol protein

2.0e-53

94.64

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Query:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV
        MLVYGAKDL LTGYTDSDFQTDKDSRKSTSGSVFTLNGG VVWRSIKQGCIADS MEAEYVAACEAAK+AVWLRKFLHDLEVVPNMNLP TLYCDNSGAV
Subjt:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV

Query:  ANSKEPHSHKRG
        ANSKEP SHKRG
Subjt:  ANSKEPHSHKRG

A0A5A7TZD0 Gag/pol protein

2.0e-53

94.64

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Query:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV
        MLVYGAKDL LTGYTDSDFQTDKDSRKSTSGSVFTLNGG VVWRSIKQGCIADS MEAEYVAACEAAK+AVWLRKFLHDLEVVPNMNLP TLYCDNSGAV
Subjt:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV

Query:  ANSKEPHSHKRG
        ANSKEP SHKRG
Subjt:  ANSKEPHSHKRG

A0A5A7UYE8 Gag/pol protein

2.0e-53

94.64

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Query:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV
        MLVYGAKDL LTGYTDSDFQTDKDSRKSTSGSVFTLNGG VVWRSIKQGCIADS MEAEYVAACEAAK+AVWLRKFLHDLEVVPNMNLP TLYCDNSGAV
Subjt:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV

Query:  ANSKEPHSHKRG
        ANSKEP SHKRG
Subjt:  ANSKEPHSHKRG

A0A5A7V1F5 Gag/pol protein

1.7e-52

93.75

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Query:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV
        MLVYGAKDL LTGYTDSDFQTDKDSRKSTSGSVFTLN G VVWRSIKQGCIADS MEAEYVAACEAAK+AVWLRKFLHDLEVVPNMNLP TLYCDNSGAV
Subjt:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV

Query:  ANSKEPHSHKRG
        ANSKEP SHKRG
Subjt:  ANSKEPHSHKRG

A0A5D3BVA6 Retrovirus-related pol polyprotein from transposon tnt 1-94

2.2e-52

91.89

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Query:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV
        MLVYGAKDL LTGYTD DFQTDKDS+KSTSGSVFTLNGGVVVWRSI+QGCIADS MEAEYVAACEAAK+AVWLRKFLHDLEVVPNMNLP T+YCDNSGA+
Subjt:  MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAV

Query:  ANSKEPHSHKR
        ANSKEPHSHKR
Subjt:  ANSKEPHSHKR

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

7.0e-11

34.31

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Query:  LTGYTDSDFQTDKDSRKSTSGSVFTL-NGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAVANSKEPHSH
        + GY DSD+   +  RKST+G +F + +  ++ W + +Q  +A S  EAEY+A  EA ++A+WL+  L  + +   +  P  +Y DN G ++ +  P  H
Subjt:  LTGYTDSDFQTDKDSRKSTSGSVFTL-NGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAVANSKEPHSH

Query:  KR
        KR
Subjt:  KR

P0CV72 Secreted RxLR effector protein 161

2.4e-11

55.56

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Query:  LTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWL
        L GY+D+D+  D +SR+STSG +F LNGG V WRS KQ  +A S  E EY+A  EA ++AVWL
Subjt:  LTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.9e-18

41.82

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Query:  LVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAVA
        L +G  D  L GYTD+D   D D+RKS++G +FT +GG + W+S  Q C+A S  EAEY+AA E  K+ +WL++FL +L +         +YCD+  A+ 
Subjt:  LVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAVA

Query:  NSKEPHSHKR
         SK    H R
Subjt:  NSKEPHSHKR

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

3.8e-12

33.65

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Query:  DLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAVANSKEPH
        ++ L  ++D+ FQ+ KD+R+ST+G    L   ++ W+S KQ  ++ S  EAEY A   A  + +WL +F  +L++   ++ PT L+CDN+ A+  +    
Subjt:  DLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAVANSKEPH

Query:  SHKR
         H+R
Subjt:  SHKR

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTGTGTATGGAGCTAAGGATTTGACCCTTACAGGATACACTGATTCTGATTTCCAAACCGATAAGGATTCTAGGAAATCCACATCGGGATCAGTGTTCACCCTAAA
TGGGGGAGTTGTAGTATGGCGTAGCATCAAGCAAGGATGTATTGCAGACTCTATAATGGAGGCTGAATACGTCGCTGCTTGTGAAGCAGCAAAAAAAGCAGTTTGGCTTA
GGAAGTTCCTACATGATTTGGAAGTTGTTCCAAACATGAACTTGCCCACCACTCTATATTGTGATAACAGTGGGGCAGTAGCCAATTCTAAAGAACCTCACAGTCATAAA
CGAGGAAACACATAG

mRNA sequence

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Protein sequence

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MLVYGAKDLTLTGYTDSDFQTDKDSRKSTSGSVFTLNGGVVVWRSIKQGCIADSIMEAEYVAACEAAKKAVWLRKFLHDLEVVPNMNLPTTLYCDNSGAVANSKEPHSHK
RGNT

Cmc04g0106281 (gene) of Melon (Charmono) v1.1 genome