; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0107581 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0107581
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCMiso1.1chr04:26006061..26006581
RNA-Seq ExpressionCmc04g0107581
SyntenyCmc04g0107581
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031744753.1 uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus]8.4e-4973.94Show/hide
Query:  YVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKL
        Y  +  L+S SI N+VHEALSHPGW+NAMIEEMTA DDNGT DLV                   NPDGTVARLKARLVAK YAQ YG DYSDTFSPVAKL
Subjt:  YVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKL

Query:  TSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        TSIRLFLSMAAT+ WSLHQLDIKN+FLHGDLQEEVYMEQPPG
Subjt:  TSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

XP_031744754.1 uncharacterized protein LOC101212255 isoform X2 [Cucumis sativus]8.4e-4973.94Show/hide
Query:  YVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKL
        Y  +  L+S SI N+VHEALSHPGW+NAMIEEMTA DDNGT DLV                   NPDGTVARLKARLVAK YAQ YG DYSDTFSPVAKL
Subjt:  YVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKL

Query:  TSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        TSIRLFLSMAAT+ WSLHQLDIKN+FLHGDLQEEVYMEQPPG
Subjt:  TSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

XP_031744755.1 uncharacterized protein LOC101212255 isoform X3 [Cucumis sativus]8.4e-4973.94Show/hide
Query:  YVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKL
        Y  +  L+S SI N+VHEALSHPGW+NAMIEEMTA DDNGT DLV                   NPDGTVARLKARLVAK YAQ YG DYSDTFSPVAKL
Subjt:  YVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKL

Query:  TSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        TSIRLFLSMAAT+ WSLHQLDIKN+FLHGDLQEEVYMEQPPG
Subjt:  TSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

XP_031744756.1 uncharacterized protein LOC101212255 isoform X4 [Cucumis sativus]8.4e-4973.94Show/hide
Query:  YVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKL
        Y  +  L+S SI N+VHEALSHPGW+NAMIEEMTA DDNGT DLV                   NPDGTVARLKARLVAK YAQ YG DYSDTFSPVAKL
Subjt:  YVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKL

Query:  TSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        TSIRLFLSMAAT+ WSLHQLDIKN+FLHGDLQEEVYMEQPPG
Subjt:  TSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

XP_031744758.1 uncharacterized protein LOC101212255 isoform X5 [Cucumis sativus]8.4e-4973.94Show/hide
Query:  YVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKL
        Y  +  L+S SI N+VHEALSHPGW+NAMIEEMTA DDNGT DLV                   NPDGTVARLKARLVAK YAQ YG DYSDTFSPVAKL
Subjt:  YVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKL

Query:  TSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        TSIRLFLSMAAT+ WSLHQLDIKN+FLHGDLQEEVYMEQPPG
Subjt:  TSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

TrEMBL top hitse value%identityAlignment
A0A061ECC7 Cysteine-rich RLK (RECEPTOR-like protein kinase) 85.2e-4469.12Show/hide
Query:  LDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLF
        L+SI I  TVHEALSHPGWR AM+EEM A D NGT DL                   VN DG+VARLK R VAK YAQTYG+DYSDTFSPVAKL S+RLF
Subjt:  LDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLF

Query:  LSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        +SMAAT++W LHQLDIKN+FLHGDLQEEVYMEQPPG
Subjt:  LSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

A0A438CP53 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-4162.41Show/hide
Query:  VLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLT
        VL+  +DSIS+  TV EAL+HPGW+NAM+EE+ A +DN T  L                   VNPDG+VARLKARLVA+ YAQTYG+DYSDTFSPVAKL 
Subjt:  VLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLT

Query:  SIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        S+RLF+S+AA+  W +HQLDIKN+FLHGDL+EEVY+EQPPG
Subjt:  SIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

A0A438GAA6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-4162.41Show/hide
Query:  VLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLT
        VL+  +DSIS+  TV EAL+HPGW+NAM+EE+ A +DN T  L                   VNPDG+VARLKARLVA+ YAQTYG+DYSDTFSPVAKL 
Subjt:  VLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLT

Query:  SIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        S+RLF+S+AA+  W +HQLDIKN+FLHGDL+EEVY+EQPPG
Subjt:  SIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

A0A5D3DJ35 Cysteine-rich RLK (RECEPTOR-like protein kinase) 86.5e-4766.46Show/hide
Query:  FPITNYL-------PPYVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQ
        +P+++++       P Y  +  L+S SI NTVHEALSH GWRNAMIEEMTA DDNGT DL                   VN DGTV +LKA LVAK YAQ
Subjt:  FPITNYL-------PPYVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQ

Query:  TYGIDYSDTFSPVAKLTSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        TYGI+YSDTFSPVAKLTSIRLFLSMAATHNWSL QLDIKN FLHGDLQEEVYMEQP G
Subjt:  TYGIDYSDTFSPVAKLTSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

A0A5D3E5M8 Copia protein8.3e-4273.02Show/hide
Query:  VHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMAATHNW
        + +ALSHPGWRNAMIEEMTA DDNGT DL                   VN +GTV R KARLVAKDYAQTYGIDYSDTFS V KLTSIRLFLSMAATHNW
Subjt:  VHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMAATHNW

Query:  SLHQLDIKNSFLHGDLQEEVYMEQPP
        SLHQL+IKN FLHGDLQE+VY+EQPP
Subjt:  SLHQLDIKNSFLHGDLQEEVYMEQPP

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.6e-1648.1Show/hide
Query:  NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPGL
        N  G   R KARLVA+ + Q Y IDY +TF+PVA+++S R  LS+   +N  +HQ+D+K +FL+G L+EE+YM  P G+
Subjt:  NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPGL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.7e-2144.27Show/hide
Query:  TVHEALSHP---GWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMAA
        ++ E LSHP       AM EEM +   NGT  LV                   + D  + R KARLV K + Q  GID+ + FSPV K+TSIR  LS+AA
Subjt:  TVHEALSHP---GWRNAMIEEMTAFDDNGTRDLV-------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMAA

Query:  THNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        + +  + QLD+K +FLHGDL+EE+YMEQP G
Subjt:  THNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

P92520 Uncharacterized mitochondrial protein AtMg008206.8e-0941.3Show/hide
Query:  ALSHPGWRNAMIEEMTAFDDNGTRDLVNP-------------------DGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMA
        AL  PGW  AM EE+ A   N T  LV P                   DGT+ RLKARLVAK + Q  GI + +T+SPV +  +IR  L++A
Subjt:  ALSHPGWRNAMIEEMTAFDDNGTRDLVNP-------------------DGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE17.5e-2444.14Show/hide
Query:  PPYVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV--------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPV
        P Y L + L + S   T  +AL    WRNAM  E+ A   N T DLV                    N DG++ R KARLVAK Y Q  G+DY++TFSPV
Subjt:  PPYVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLV--------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPV

Query:  AKLTSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG
         K TSIR+ L +A   +W + QLD+ N+FL G L ++VYM QPPG
Subjt:  AKLTSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPG

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.4e-2244.96Show/hide
Query:  TVHEALSHPGWRNAMIEEMTAFDDNGTRDLV--------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMAATH
        T  +A+    WR AM  E+ A   N T DLV                    N DG++ R KARLVAK Y Q  G+DY++TFSPV K TSIR+ L +A   
Subjt:  TVHEALSHPGWRNAMIEEMTAFDDNGTRDLV--------------------NPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMAATH

Query:  NWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        +W + QLD+ N+FL G L +EVYM QPPG
Subjt:  NWSLHQLDIKNSFLHGDLQEEVYMEQPPG

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 85.3e-2544.96Show/hide
Query:  NTVHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMAATH
        +T +EA     W  AM +E+ A +   T ++                    N DGT+ R KARLVAK Y Q  GID+ +TFSPV KLTS++L L+++A +
Subjt:  NTVHEALSHPGWRNAMIEEMTAFDDNGTRDL-------------------VNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMAATH

Query:  NWSLHQLDIKNSFLHGDLQEEVYMEQPPG
        N++LHQLDI N+FL+GDL EE+YM+ PPG
Subjt:  NWSLHQLDIKNSFLHGDLQEEVYMEQPPG

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)4.8e-1041.3Show/hide
Query:  ALSHPGWRNAMIEEMTAFDDNGTRDLVNP-------------------DGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMA
        AL  PGW  AM EE+ A   N T  LV P                   DGT+ RLKARLVAK + Q  GI + +T+SPV +  +IR  L++A
Subjt:  ALSHPGWRNAMIEEMTAFDDNGTRDLVNP-------------------DGTVARLKARLVAKDYAQTYGIDYSDTFSPVAKLTSIRLFLSMA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATTCCCATTGCTCTTCGCAAAGGTAAACGCAACTGTACTTACCCTGTTTCTTCTTTTGTTTCCTATCACCAATTATCTCCCCCCATATGTGCTTTTATTACATCT
TGACTCCATATCTATTCTTAACACTGTTCATGAAGCTTTATCTCATCCTGGCTGGCGAAATGCAATGATTGAAGAGATGACTGCTTTCGATGATAATGGTACTAGGGATT
TGGTGAATCCTGATGGAACAGTGGCTCGATTGAAAGCTCGTCTTGTTGCCAAAGATTATGCTCAAACTTATGGTATTGATTATTCAGATACATTTTCTCCAGTTGCCAAA
TTAACTTCCATCCGCCTATTTCTTTCCATGGCTGCTACCCATAACTGGTCTTTGCATCAACTTGACATTAAGAATTCTTTTCTGCATGGTGATCTTCAAGAGGAAGTTTA
TATGGAGCAACCACCTGGTTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATATTCCCATTGCTCTTCGCAAAGGTAAACGCAACTGTACTTACCCTGTTTCTTCTTTTGTTTCCTATCACCAATTATCTCCCCCCATATGTGCTTTTATTACATCT
TGACTCCATATCTATTCTTAACACTGTTCATGAAGCTTTATCTCATCCTGGCTGGCGAAATGCAATGATTGAAGAGATGACTGCTTTCGATGATAATGGTACTAGGGATT
TGGTGAATCCTGATGGAACAGTGGCTCGATTGAAAGCTCGTCTTGTTGCCAAAGATTATGCTCAAACTTATGGTATTGATTATTCAGATACATTTTCTCCAGTTGCCAAA
TTAACTTCCATCCGCCTATTTCTTTCCATGGCTGCTACCCATAACTGGTCTTTGCATCAACTTGACATTAAGAATTCTTTTCTGCATGGTGATCTTCAAGAGGAAGTTTA
TATGGAGCAACCACCTGGTTTGTAG
Protein sequenceShow/hide protein sequence
MIFPLLFAKVNATVLTLFLLLFPITNYLPPYVLLLHLDSISILNTVHEALSHPGWRNAMIEEMTAFDDNGTRDLVNPDGTVARLKARLVAKDYAQTYGIDYSDTFSPVAK
LTSIRLFLSMAATHNWSLHQLDIKNSFLHGDLQEEVYMEQPPGL