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Cmc04g0107871 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0107871
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionsurvival of motor neuron-related-splicing factor 30
Genome locationCMiso1.1chr04:26564961..26566277
RNA-Seq ExpressionCmc04g0107871
SyntenyCmc04g0107871
Gene Ontology termsGO:0006397 - mRNA processing (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054176.1 survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis melo var. makuwa]9.5e-18100Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

KAG7032438.1 Survival of motor neuron-related-splicing factor 30 [Cucurbita argyrosperma subsp. argyrosperma]2.0e-1591.84Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

XP_004142808.1 survival of motor neuron-related-splicing factor 30 isoform X1 [Cucumis sativus]9.5e-18100Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

XP_022155149.1 survival of motor neuron-related-splicing factor 30 [Momordica charantia]1.5e-1593.88Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        MQGGEDVSIEELA+NLSTYKDQL QVRQLLDDDP NSEYIDMEKELEEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

XP_038876515.1 survival of motor neuron-related-splicing factor 30 [Benincasa hispida]8.0e-1797.96Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        MQGGEDVSIEELANNLSTYKDQL QVRQLLDDDPGNSEYIDMEKELEEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

TrEMBL top hitse value%identityAlignment
A0A0A0KUI2 Uncharacterized protein4.6e-18100Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

A0A5A7UIS4 Survival of motor neuron-related-splicing factor 30 isoform X14.6e-18100Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

A0A6J1DPE2 survival of motor neuron-related-splicing factor 307.3e-1693.88Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        MQGGEDVSIEELA+NLSTYKDQL QVRQLLDDDP NSEYIDMEKELEEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

A0A6J1EY48 survival of motor neuron-related-splicing factor 309.6e-1691.84Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

A0A6J1K7R2 survival of motor neuron-related-splicing factor 309.6e-1691.84Show/hide
Query:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        MQGGEDVS+EELA NLSTYKDQL QVR+LLDDDPGNSEYIDMEKELEEV
Subjt:  MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G02570.1 nucleic acid binding;RNA binding1.7e-1270.21Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EV
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

AT2G02570.2 nucleic acid binding;RNA binding1.7e-1270.21Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EV
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

AT2G02570.3 nucleic acid binding;RNA binding1.7e-1270.21Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EV
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV

AT2G02570.4 nucleic acid binding;RNA binding1.7e-1270.21Show/hide
Query:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV
        G E++SIE+LA+++STYK+QL QVRQLL +DP NSEY DMEKEL+EV
Subjt:  GGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGAGGAGAAGATGTTAGCATTGAAGAGTTGGCTAATAATCTGTCTACCTACAAAGACCAGCTTCACCAGGTCAGACAGCTGTTAGATGATGATCCTGGCAACTC
TGAATACATTGATATGGAAAAAGAGCTTGAAGAGGTGTGCTAA
mRNA sequenceShow/hide mRNA sequence
TGAGCATCAAAAGGGCTGTGTTCTTAATCTGGACGGGGGGAGTTAGCGTTTGTGTGTGCGTTCTTCACCATCCTCTGATTCTCCTAAAAACTTTTCCAATTTTGCGCTTT
TTTTCCCCTTCTCCTCCTCCTCTGTTCATCCAATTCTACCAAAATAATGCAAGGAGGAGAAGATGTTAGCATTGAAGAGTTGGCTAATAATCTGTCTACCTACAAAGACC
AGCTTCACCAGGTCAGACAGCTGTTAGATGATGATCCTGGCAACTCTGAATACATTGATATGGAAAAAGAGCTTGAAGAGGTGTGCTAATATT
Protein sequenceShow/hide protein sequence
MQGGEDVSIEELANNLSTYKDQLHQVRQLLDDDPGNSEYIDMEKELEEVC