; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0108011 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0108011
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase domain-containing protein
Genome locationCMiso1.1chr04:26881499..26882221
RNA-Seq ExpressionCmc04g0108011
SyntenyCmc04g0108011
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]8.9e-13095.83Show/hide
Query:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID
        M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMID
Subjt:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID

Query:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
        ATAGHEALSFMDGSS YNQIRMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLR
Subjt:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR

Query:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI
        KYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Subjt:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

KAA0052361.1 uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa]8.9e-13095.83Show/hide
Query:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID
        MSGLDPKVVVHRLAIKPEHRPVKQAQ+RFRPELISQIEEEVNKLIEAGFIREVKYPTWIAN+VPVRKKNGQLRVCVDF DLNNACPKDDFPLPIMEIMID
Subjt:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID

Query:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
        ATAGHEALSFMDGSS YNQIRMAL+DEEKTA RTPKGIYCYK+MPF LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
Subjt:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR

Query:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI
        KYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Subjt:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]6.8e-13096.25Show/hide
Query:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID
        M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMID
Subjt:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID

Query:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
        ATAGHEALSFMDGSS YNQIRMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
Subjt:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR

Query:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI
        KYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Subjt:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]6.8e-13096.25Show/hide
Query:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID
        M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMID
Subjt:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID

Query:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
        ATAGHEALSFMDGSS YNQIRMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
Subjt:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR

Query:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI
        KYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Subjt:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

TYK16275.1 uncharacterized protein E5676_scaffold21G00440 [Cucumis melo var. makuwa]8.9e-13095.83Show/hide
Query:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID
        M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMID
Subjt:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID

Query:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
        ATAGHEALSFMDGSS YNQIRMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLR
Subjt:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR

Query:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI
        KYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Subjt:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

TrEMBL top hitse value%identityAlignment
A0A5A7TZU9 Ribonuclease H4.3e-13095.83Show/hide
Query:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID
        M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMID
Subjt:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID

Query:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
        ATAGHEALSFMDGSS YNQIRMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLR
Subjt:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR

Query:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI
        KYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Subjt:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

A0A5D3BIH8 Uncharacterized protein3.3e-13096.25Show/hide
Query:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID
        M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMID
Subjt:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID

Query:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
        ATAGHEALSFMDGSS YNQIRMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
Subjt:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR

Query:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI
        KYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Subjt:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

A0A5D3BTY1 Ribonuclease H3.3e-13096.25Show/hide
Query:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID
        M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMID
Subjt:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID

Query:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
        ATAGHEALSFMDGSS YNQIRMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
Subjt:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR

Query:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI
        KYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Subjt:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

A0A5D3CXS1 Uncharacterized protein4.3e-13095.83Show/hide
Query:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID
        M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMID
Subjt:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID

Query:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
        ATAGHEALSFMDGSS YNQIRMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLR
Subjt:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR

Query:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI
        KYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Subjt:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

A0A5D3D1E5 Ribonuclease H4.3e-13095.83Show/hide
Query:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID
        M GLDPKV VHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDF+DLNNACPKDDFPLPIMEIMID
Subjt:  MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMID

Query:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR
        ATAGHEALSFMDGSS YNQIRMAL+DEEKTA RTPKGIYCYKVMPF LKNAGATYQRAMQRIFDDMLHKH+ECYVDDLVVKSKKKCDHLKDLKLVLDRLR
Subjt:  ATAGHEALSFMDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLR

Query:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI
        KYQLRMNPLKCAFGVTSGKFLGFI R RGIEVDHSKIDAI
Subjt:  KYQLRMNPLKCAFGVTSGKFLGFIARPRGIEVDHSKIDAI

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.4e-2932.39Show/hide
Query:  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDE
        P  +  + +E+N+ +++G IRE K      N  PV    KK G LR+ VD++ LN     + +PLP++E ++    G    + +D  S Y+ IR+   DE
Subjt:  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDE

Query:  EKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARP
         K A R P+G++ Y VMP+ +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F  +  KF+G+    
Subjt:  EKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARP

Query:  RGIEVDHSKIDAI
        +G       ID +
Subjt:  RGIEVDHSKIDAI

P0CT35 Transposon Tf2-2 polyprotein2.4e-2932.39Show/hide
Query:  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDE
        P  +  + +E+N+ +++G IRE K      N  PV    KK G LR+ VD++ LN     + +PLP++E ++    G    + +D  S Y+ IR+   DE
Subjt:  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDE

Query:  EKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARP
         K A R P+G++ Y VMP+ +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F  +  KF+G+    
Subjt:  EKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARP

Query:  RGIEVDHSKIDAI
        +G       ID +
Subjt:  RGIEVDHSKIDAI

P0CT36 Transposon Tf2-3 polyprotein2.4e-2932.39Show/hide
Query:  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDE
        P  +  + +E+N+ +++G IRE K      N  PV    KK G LR+ VD++ LN     + +PLP++E ++    G    + +D  S Y+ IR+   DE
Subjt:  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDE

Query:  EKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARP
         K A R P+G++ Y VMP+ +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F  +  KF+G+    
Subjt:  EKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARP

Query:  RGIEVDHSKIDAI
        +G       ID +
Subjt:  RGIEVDHSKIDAI

P0CT37 Transposon Tf2-4 polyprotein2.4e-2932.39Show/hide
Query:  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDE
        P  +  + +E+N+ +++G IRE K      N  PV    KK G LR+ VD++ LN     + +PLP++E ++    G    + +D  S Y+ IR+   DE
Subjt:  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDE

Query:  EKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARP
         K A R P+G++ Y VMP+ +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F  +  KF+G+    
Subjt:  EKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARP

Query:  RGIEVDHSKIDAI
        +G       ID +
Subjt:  RGIEVDHSKIDAI

P0CT41 Transposon Tf2-12 polyprotein2.4e-2932.39Show/hide
Query:  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDE
        P  +  + +E+N+ +++G IRE K      N  PV    KK G LR+ VD++ LN     + +PLP++E ++    G    + +D  S Y+ IR+   DE
Subjt:  PELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVR---KKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSFMDGSSEYNQIRMALDDE

Query:  EKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARP
         K A R P+G++ Y VMP+ +  A A +Q  +  I  +    H+ CY+DD+++ SK + +H+K +K VL +L+   L +N  KC F  +  KF+G+    
Subjt:  EKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKFLGFIARP

Query:  RGIEVDHSKIDAI
        +G       ID +
Subjt:  RGIEVDHSKIDAI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGGACTCGATCCAAAGGTGGTCGTTCATCGCTTAGCGATCAAACCAGAGCATCGGCCAGTCAAGCAAGCCCAACGACGATTTCGACCAGAACTCATTTCTCAAAT
CGAGGAAGAGGTAAATAAGCTCATTGAGGCTGGATTTATTCGTGAAGTCAAGTACCCAACATGGATAGCTAATATTGTTCCAGTAAGAAAGAAGAATGGCCAACTACGTG
TTTGTGTCGATTTTCAAGACCTAAATAACGCATGCCCAAAAGATGACTTTCCTTTGCCTATCATGGAAATCATGATAGATGCAACTGCAGGGCATGAAGCTTTATCTTTT
ATGGATGGGTCGTCAGAATATAACCAGATTAGAATGGCTCTAGATGACGAGGAGAAAACAGCACTTCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCAG
ATTGAAAAATGCAGGTGCAACATACCAGCGCGCTATGCAAAGGATCTTTGATGATATGCTGCATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGA
AGAAATGCGATCACTTGAAAGACCTAAAGCTTGTACTCGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAGTTT
TTGGGATTTATAGCGAGACCTCGTGGCATCGAAGTTGATCACTCAAAAATTGATGCTATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGGACTCGATCCAAAGGTGGTCGTTCATCGCTTAGCGATCAAACCAGAGCATCGGCCAGTCAAGCAAGCCCAACGACGATTTCGACCAGAACTCATTTCTCAAAT
CGAGGAAGAGGTAAATAAGCTCATTGAGGCTGGATTTATTCGTGAAGTCAAGTACCCAACATGGATAGCTAATATTGTTCCAGTAAGAAAGAAGAATGGCCAACTACGTG
TTTGTGTCGATTTTCAAGACCTAAATAACGCATGCCCAAAAGATGACTTTCCTTTGCCTATCATGGAAATCATGATAGATGCAACTGCAGGGCATGAAGCTTTATCTTTT
ATGGATGGGTCGTCAGAATATAACCAGATTAGAATGGCTCTAGATGACGAGGAGAAAACAGCACTTCGAACTCCAAAAGGTATATACTGTTATAAGGTAATGCCTTTCAG
ATTGAAAAATGCAGGTGCAACATACCAGCGCGCTATGCAAAGGATCTTTGATGATATGCTGCATAAACACATTGAATGTTATGTTGACGATCTCGTAGTCAAGTCCAAGA
AGAAATGCGATCACTTGAAAGACCTAAAGCTTGTACTCGATCGCCTCAGAAAATATCAACTAAGAATGAACCCTCTCAAGTGTGCATTTGGTGTAACTTCAGGGAAGTTT
TTGGGATTTATAGCGAGACCTCGTGGCATCGAAGTTGATCACTCAAAAATTGATGCTATCTAG
Protein sequenceShow/hide protein sequence
MSGLDPKVVVHRLAIKPEHRPVKQAQRRFRPELISQIEEEVNKLIEAGFIREVKYPTWIANIVPVRKKNGQLRVCVDFQDLNNACPKDDFPLPIMEIMIDATAGHEALSF
MDGSSEYNQIRMALDDEEKTALRTPKGIYCYKVMPFRLKNAGATYQRAMQRIFDDMLHKHIECYVDDLVVKSKKKCDHLKDLKLVLDRLRKYQLRMNPLKCAFGVTSGKF
LGFIARPRGIEVDHSKIDAI