; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0108041 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0108041
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr04:26904196..26905056
RNA-Seq ExpressionCmc04g0108041
SyntenyCmc04g0108041
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR016197 - Chromo-like domain superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054209.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa]2.5e-16398.95Show/hide
Query:  MSFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDH
        MSFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDH
Subjt:  MSFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDH

Query:  LQLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQ
        LQLAQDQMKRYADKKRRNVEYEVGDLVF+KIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLI ENINVQPT+Q
Subjt:  LQLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQ

Query:  QINENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKKLHV
        QINENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKKLHV
Subjt:  QINENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKKLHV

KAA0063462.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]1.0e-11972.34Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL
        S AYHPQSDGQTEVVNRGVE+YLRC C++KPKEW++W++W EYWYNTTF+RALGMTPFQVVYG++PPPL+ YG  VT+NATLDEQL+ERD  + +L++HL
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL

Query:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ
        +LAQDQMK+ ADKKRR+VEYEVGD VF KIRPYRQLSLRRKRNEKLS+KYF PYKI ERIGP+AYKLEL + + IH VF+VSQLKKL+ E+INVQPTVQQ
Subjt:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ

Query:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK
        ++ENF W T P EV+DYR+ K + WEVM+ WE L  HEAT E+Y+D+ ++YPNFHLEDKV+LEGR NV+PP++  YSRKNK+
Subjt:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK

TYJ95763.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-11971.99Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL
        S AYHPQSDGQTEVVNRGVE+YLRC C++KPKEW++W++W EYWYNTTF+RALGMTPFQVVYG++PPPL+ YG  VT+NATLDEQL+ERD  + +L++HL
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL

Query:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ
        +LAQDQMK+ ADKKRR+VEYEVGD VF KIRPYRQLSLRRKRNEKLS+KYF PYKI ERIGP+AYKLEL + + IH VF+VSQLKKL+ E+INVQPTVQQ
Subjt:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ

Query:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK
        ++ENF W T P E +DYR+ K + WEVM+ WE L  HEAT E+Y+D+ ++YPNFHLEDKV+LEGR NV+PP++  YSRKNK+
Subjt:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK

TYJ96875.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.1e-11669.5Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL
        S AYHPQSDGQTEVVNRGVE+YLRCFC++KPKEWV+W++W EYWYNTTF++ALGMTPFQVVYG++PPPL+ YG  VT N TLDEQLKERD  + +L+++L
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL

Query:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ
        +LAQ+QMK+YADK+RR++EY+VGDLVF KIRPYRQLSLRRKRNEKLS+KYF PYKI ERIGP+AYKLEL  S+ IH VF+VSQLKKL+ E+ ++QPT+QQ
Subjt:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ

Query:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK
        ++ENF W+T P E +DYR+ K   WEVM+ W+ L IHE T E Y D+  +YP+FHLEDKV+LEGR NV+PP++  YSRKNK+
Subjt:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK

TYK22240.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.2e-11971.99Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL
        S AYHPQSDGQTEVVNRGVE+YLRC C++KPKEW++W++W EYWYNTTF+RALGMTPFQVVYG++PPPL+ YG  VT+NATLDEQL+ERD  + +L++HL
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL

Query:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ
        +LAQDQMK+ ADKKRR+VEYEVGD VF KIRPYRQLSLRRKRNEKLS+KYF PYKI ERIGP+AYKLEL + + IH VF+VSQLKKL+ E+INVQPTVQQ
Subjt:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ

Query:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK
        ++ENF W T P E +DYR+ K + WEVM+ WE L  HEAT E+Y+D+ ++YPNFHLEDKV+LEGR NV+PP++  YSRKNK+
Subjt:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK

TrEMBL top hitse value%identityAlignment
A0A5A7UL30 Putative retroelement pol polyprotein1.2e-16398.95Show/hide
Query:  MSFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDH
        MSFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDH
Subjt:  MSFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDH

Query:  LQLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQ
        LQLAQDQMKRYADKKRRNVEYEVGDLVF+KIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLI ENINVQPT+Q
Subjt:  LQLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQ

Query:  QINENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKKLHV
        QINENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKKLHV
Subjt:  QINENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKKLHV

A0A5A7V5C5 Transposon Ty3-G Gag-Pol polyprotein4.8e-12072.34Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL
        S AYHPQSDGQTEVVNRGVE+YLRC C++KPKEW++W++W EYWYNTTF+RALGMTPFQVVYG++PPPL+ YG  VT+NATLDEQL+ERD  + +L++HL
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL

Query:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ
        +LAQDQMK+ ADKKRR+VEYEVGD VF KIRPYRQLSLRRKRNEKLS+KYF PYKI ERIGP+AYKLEL + + IH VF+VSQLKKL+ E+INVQPTVQQ
Subjt:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ

Query:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK
        ++ENF W T P EV+DYR+ K + WEVM+ WE L  HEAT E+Y+D+ ++YPNFHLEDKV+LEGR NV+PP++  YSRKNK+
Subjt:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK

A0A5D3B8Y6 Ty3/gypsy retrotransposon protein1.1e-11971.99Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL
        S AYHPQSDGQTEVVNRGVE+YLRC C++KPKEW++W++W EYWYNTTF+RALGMTPFQVVYG++PPPL+ YG  VT+NATLDEQL+ERD  + +L++HL
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL

Query:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ
        +LAQDQMK+ ADKKRR+VEYEVGD VF KIRPYRQLSLRRKRNEKLS+KYF PYKI ERIGP+AYKLEL + + IH VF+VSQLKKL+ E+INVQPTVQQ
Subjt:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ

Query:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK
        ++ENF W T P E +DYR+ K + WEVM+ WE L  HEAT E+Y+D+ ++YPNFHLEDKV+LEGR NV+PP++  YSRKNK+
Subjt:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK

A0A5D3BEL2 Ty3/gypsy retrotransposon protein2.5e-11669.5Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL
        S AYHPQSDGQTEVVNRGVE+YLRCFC++KPKEWV+W++W EYWYNTTF++ALGMTPFQVVYG++PPPL+ YG  VT N TLDEQLKERD  + +L+++L
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL

Query:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ
        +LAQ+QMK+YADK+RR++EY+VGDLVF KIRPYRQLSLRRKRNEKLS+KYF PYKI ERIGP+AYKLEL  S+ IH VF+VSQLKKL+ E+ ++QPT+QQ
Subjt:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ

Query:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK
        ++ENF W+T P E +DYR+ K   WEVM+ W+ L IHE T E Y D+  +YP+FHLEDKV+LEGR NV+PP++  YSRKNK+
Subjt:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK

A0A5D3DFT1 Ty3/gypsy retrotransposon protein1.1e-11971.99Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL
        S AYHPQSDGQTEVVNRGVE+YLRC C++KPKEW++W++W EYWYNTTF+RALGMTPFQVVYG++PPPL+ YG  VT+NATLDEQL+ERD  + +L++HL
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHL

Query:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ
        +LAQDQMK+ ADKKRR+VEYEVGD VF KIRPYRQLSLRRKRNEKLS+KYF PYKI ERIGP+AYKLEL + + IH VF+VSQLKKL+ E+INVQPTVQQ
Subjt:  QLAQDQMKRYADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQ

Query:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK
        ++ENF W T P E +DYR+ K + WEVM+ WE L  HEAT E+Y+D+ ++YPNFHLEDKV+LEGR NV+PP++  YSRKNK+
Subjt:  INENFEWETKPTEVVDYRKTKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKK

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.2e-2034.72Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQP--PPLIYYGDVVTTNATLDEQLKERDLTLAALKD
        S  Y PQ+DGQTE  N+ VE  LRC CS  P  WV+ +S  +  YN     A  MTPF++V+   P   PL    ++ + +   DE  +E       +K+
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQP--PPLIYYGDVVTTNATLDEQLKERDLTLAALKD

Query:  HLQLAQDQMKRYADKKRRNV-EYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHV----FNVSQLKK
        HL     +MK+Y D K + + E++ GDLV  K    R  +    ++ KL+  +  P+ + ++ GP  Y+L+L D  SI H+    F+VS L+K
Subjt:  HLQLAQDQMKRYADKKRRNV-EYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHV----FNVSQLKK

P0CT35 Transposon Tf2-2 polyprotein3.2e-2034.72Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQP--PPLIYYGDVVTTNATLDEQLKERDLTLAALKD
        S  Y PQ+DGQTE  N+ VE  LRC CS  P  WV+ +S  +  YN     A  MTPF++V+   P   PL    ++ + +   DE  +E       +K+
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQP--PPLIYYGDVVTTNATLDEQLKERDLTLAALKD

Query:  HLQLAQDQMKRYADKKRRNV-EYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHV----FNVSQLKK
        HL     +MK+Y D K + + E++ GDLV  K    R  +    ++ KL+  +  P+ + ++ GP  Y+L+L D  SI H+    F+VS L+K
Subjt:  HLQLAQDQMKRYADKKRRNV-EYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHV----FNVSQLKK

P0CT36 Transposon Tf2-3 polyprotein3.2e-2034.72Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQP--PPLIYYGDVVTTNATLDEQLKERDLTLAALKD
        S  Y PQ+DGQTE  N+ VE  LRC CS  P  WV+ +S  +  YN     A  MTPF++V+   P   PL    ++ + +   DE  +E       +K+
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQP--PPLIYYGDVVTTNATLDEQLKERDLTLAALKD

Query:  HLQLAQDQMKRYADKKRRNV-EYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHV----FNVSQLKK
        HL     +MK+Y D K + + E++ GDLV  K    R  +    ++ KL+  +  P+ + ++ GP  Y+L+L D  SI H+    F+VS L+K
Subjt:  HLQLAQDQMKRYADKKRRNV-EYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHV----FNVSQLKK

P0CT41 Transposon Tf2-12 polyprotein3.2e-2034.72Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQP--PPLIYYGDVVTTNATLDEQLKERDLTLAALKD
        S  Y PQ+DGQTE  N+ VE  LRC CS  P  WV+ +S  +  YN     A  MTPF++V+   P   PL    ++ + +   DE  +E       +K+
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQP--PPLIYYGDVVTTNATLDEQLKERDLTLAALKD

Query:  HLQLAQDQMKRYADKKRRNV-EYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHV----FNVSQLKK
        HL     +MK+Y D K + + E++ GDLV  K    R  +    ++ KL+  +  P+ + ++ GP  Y+L+L D  SI H+    F+VS L+K
Subjt:  HLQLAQDQMKRYADKKRRNV-EYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHV----FNVSQLKK

Q9UR07 Transposon Tf2-11 polyprotein3.2e-2034.72Show/hide
Query:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQP--PPLIYYGDVVTTNATLDEQLKERDLTLAALKD
        S  Y PQ+DGQTE  N+ VE  LRC CS  P  WV+ +S  +  YN     A  MTPF++V+   P   PL    ++ + +   DE  +E       +K+
Subjt:  SFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQP--PPLIYYGDVVTTNATLDEQLKERDLTLAALKD

Query:  HLQLAQDQMKRYADKKRRNV-EYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHV----FNVSQLKK
        HL     +MK+Y D K + + E++ GDLV  K    R  +    ++ KL+  +  P+ + ++ GP  Y+L+L D  SI H+    F+VS L+K
Subjt:  HLQLAQDQMKRYADKKRRNV-EYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHV----FNVSQLKK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTTTTGCATACCATCCACAATCAGATGGTCAAACCGAAGTGGTGAACAGAGGAGTGGAGATTTATTTGAGATGTTTTTGCAGTGAGAAGCCTAAAGAATGGGTAGA
GTGGTTGTCGTGGACAGAATATTGGTATAATACCACTTTCGAGAGGGCTTTAGGCATGACTCCTTTCCAAGTGGTATATGGTCAACAACCACCTCCTTTGATTTACTATG
GTGATGTTGTAACAACGAATGCCACTCTGGATGAACAGTTGAAAGAAAGGGATTTGACCCTAGCAGCTCTGAAGGATCATTTACAATTGGCACAAGATCAAATGAAAAGA
TATGCTGATAAGAAGAGGAGGAATGTGGAATATGAGGTTGGAGATTTGGTTTTTCAAAAAATTAGACCTTATCGCCAGCTCTCTTTGAGAAGAAAAAGGAATGAGAAGCT
GTCATCTAAATATTTCGAGCCTTATAAGATCTTTGAAAGGATCGGTCCAATTGCTTATAAGCTGGAGTTATCTGATAGCTCATCAATCCATCATGTTTTCAATGTTTCTC
AACTGAAGAAACTGATAGAAGAGAACATCAATGTACAGCCAACAGTCCAACAGATAAACGAGAACTTTGAATGGGAGACTAAACCTACTGAAGTTGTTGATTATCGCAAG
ACTAAGACAAGAAACTGGGAAGTGATGGTAAGTTGGGAAAGGTTGCCTATTCATGAGGCAACTCAGGAAGAATATGAAGATATGCAGCACCGGTATCCTAACTTTCACCT
TGAGGACAAGGTGAATTTGGAAGGGAGGGGTAATGTTAAACCCCCAGTAATACACCATTATAGCAGGAAAAATAAAAAGTTACACGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTTTTGCATACCATCCACAATCAGATGGTCAAACCGAAGTGGTGAACAGAGGAGTGGAGATTTATTTGAGATGTTTTTGCAGTGAGAAGCCTAAAGAATGGGTAGA
GTGGTTGTCGTGGACAGAATATTGGTATAATACCACTTTCGAGAGGGCTTTAGGCATGACTCCTTTCCAAGTGGTATATGGTCAACAACCACCTCCTTTGATTTACTATG
GTGATGTTGTAACAACGAATGCCACTCTGGATGAACAGTTGAAAGAAAGGGATTTGACCCTAGCAGCTCTGAAGGATCATTTACAATTGGCACAAGATCAAATGAAAAGA
TATGCTGATAAGAAGAGGAGGAATGTGGAATATGAGGTTGGAGATTTGGTTTTTCAAAAAATTAGACCTTATCGCCAGCTCTCTTTGAGAAGAAAAAGGAATGAGAAGCT
GTCATCTAAATATTTCGAGCCTTATAAGATCTTTGAAAGGATCGGTCCAATTGCTTATAAGCTGGAGTTATCTGATAGCTCATCAATCCATCATGTTTTCAATGTTTCTC
AACTGAAGAAACTGATAGAAGAGAACATCAATGTACAGCCAACAGTCCAACAGATAAACGAGAACTTTGAATGGGAGACTAAACCTACTGAAGTTGTTGATTATCGCAAG
ACTAAGACAAGAAACTGGGAAGTGATGGTAAGTTGGGAAAGGTTGCCTATTCATGAGGCAACTCAGGAAGAATATGAAGATATGCAGCACCGGTATCCTAACTTTCACCT
TGAGGACAAGGTGAATTTGGAAGGGAGGGGTAATGTTAAACCCCCAGTAATACACCATTATAGCAGGAAAAATAAAAAGTTACACGTGTGA
Protein sequenceShow/hide protein sequence
MSFAYHPQSDGQTEVVNRGVEIYLRCFCSEKPKEWVEWLSWTEYWYNTTFERALGMTPFQVVYGQQPPPLIYYGDVVTTNATLDEQLKERDLTLAALKDHLQLAQDQMKR
YADKKRRNVEYEVGDLVFQKIRPYRQLSLRRKRNEKLSSKYFEPYKIFERIGPIAYKLELSDSSSIHHVFNVSQLKKLIEENINVQPTVQQINENFEWETKPTEVVDYRK
TKTRNWEVMVSWERLPIHEATQEEYEDMQHRYPNFHLEDKVNLEGRGNVKPPVIHHYSRKNKKLHV