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Cmc04g0108101 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0108101
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description40S ribosomal protein S13
Genome locationCMiso1.1chr04:27042277..27042492
RNA-Seq ExpressionCmc04g0108101
SyntenyCmc04g0108101
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005509 - calcium ion binding (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXC17873.1 40S ribosomal protein S13 [Morus notabilis]1.3e-2592.75Show/hide
Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        V L  S GLAPEIPEDLYHLIKKAVSIRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

PNY08741.1 40S ribosomal protein s13-like [Trifolium pratense]1.8e-2592.54Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

VDD62413.1 unnamed protein product [Brassica oleracea]7.9e-2691.3Show/hide
Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        V LL  +GLAPEIPEDLYHLIKKAV+IRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_004147941.1 40S ribosomal protein S13 [Cucumis sativus]1.0e-2592.54Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L ++GLAPEIPEDLYHLIKKAVSIRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]1.8e-2592.54Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

TrEMBL top hitse value%identityAlignment
A0A0A0L5N6 Ribosomal_S13_N domain-containing protein5.0e-2692.54Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L ++GLAPEIPEDLYHLIKKAVSIRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A0D3CV16 Ribosomal_S13_N domain-containing protein3.8e-2691.3Show/hide
Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        V LL  +GLAPEIPEDLYHLIKKAV+IRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A3P6FVN7 Ribosomal_S13_N domain-containing protein3.8e-2691.3Show/hide
Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        V LL  +GLAPEIPEDLYHLIKKAV+IRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

A0A6J1KV63 40S ribosomal protein S13-like8.5e-2692.54Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

W9RYU7 40S ribosomal protein S136.5e-2692.75Show/hide
Query:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        V L  S GLAPEIPEDLYHLIKKAVSIRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  VFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S132.6e-2791.04Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L + GLAPEIPEDLYHLIKKAVSIRKHLER RK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59223 40S ribosomal protein S13-15.1e-2891.04Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P59224 40S ribosomal protein S13-25.1e-2891.04Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

P62302 40S ribosomal protein S132.3e-2892.54Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L + GLAPEIPEDLYHLIKKAVSIRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Q69UI2 40S ribosomal protein S13-13.7e-2686.57Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L + GLAPEIPEDLY LIKKAV+IRKHLERNRK+KDSKFRLILVESRIHRLARYYK+TKKLPP WK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S153.7e-2991.04Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

AT4G00100.1 ribosomal protein S13A3.7e-2991.04Show/hide
Query:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK
        +L + GLAPEIPEDLYHLIKKAV+IRKHLERNRK+KDSKFRLILVESRIHRLARYYKKTKKLPPVWK
Subjt:  LLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACAG
GAAGGAAAAAGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCACGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGTTTTTTTATTACTATCAAAAGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAGGCTGTCTCGATTAGAAAGCATTTGGAAAGGAACAG
GAAGGAAAAAGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCACGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATAG
Protein sequenceShow/hide protein sequence
MCVFLLLSKGLAPEIPEDLYHLIKKAVSIRKHLERNRKEKDSKFRLILVESRIHRLARYYKKTKKLPPVWK