CuGenDBv2

Gene ID	Cmc04g0108111
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Genome location	CMiso1.1chr04:27047383..27048054
RNA-Seq Expression	Cmc04g0108111
Synteny	Cmc04g0108111
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

5.4e-121

95.96

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG RLDF+ AFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ+IRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVL
        RKDLEF+VGDKVFLKVAPMKGVL
Subjt:  RKDLEFDVGDKVFLKVAPMKGVL

KAA0035938.1 pol protein [Cucumis melo var. makuwa]

7.0e-121

95.52

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG RLDF+ AFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWD+HLHLMEFAYNNSYQATIGM PFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ+IRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVL
        RKDLEF++GDKVFLKVAPMKGVL
Subjt:  RKDLEFDVGDKVFLKVAPMKGVL

KAA0040699.1 pol protein [Cucumis melo var. makuwa]

5.4e-121

95.96

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG RLDF+ AFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ+IRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVL
        RKDLEF+VGDKVFLKVAPM+GVL
Subjt:  RKDLEFDVGDKVFLKVAPMKGVL

KAA0043401.1 pol protein [Cucumis melo var. makuwa]

7.0e-121

95.52

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG RLDF+ AFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ+IRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVL
        RKDLEF++GDKVFLKVAPMKGVL
Subjt:  RKDLEFDVGDKVFLKVAPMKGVL

KAA0064005.1 pol protein [Cucumis melo var. makuwa]

1.8e-121

95.96

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG RLDF+ AFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ+IRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVL
        RKDLEF++GDKVFLKVAPMKGVL
Subjt:  RKDLEFDVGDKVFLKVAPMKGVL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SZD6 Pol protein

3.4e-121

95.52

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG RLDF+ AFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWD+HLHLMEFAYNNSYQATIGM PFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ+IRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVL
        RKDLEF++GDKVFLKVAPMKGVL
Subjt:  RKDLEFDVGDKVFLKVAPMKGVL

A0A5A7THF3 Reverse transcriptase

2.6e-121

95.96

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG RLDF+ AFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ+IRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVL
        RKDLEF+VGDKVFLKVAPM+GVL
Subjt:  RKDLEFDVGDKVFLKVAPMKGVL

A0A5A7U7V9 Reverse transcriptase

3.4e-121

95.52

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG RLDF+ AFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ+IRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVL
        RKDLEF++GDKVFLKVAPMKGVL
Subjt:  RKDLEFDVGDKVFLKVAPMKGVL

A0A5A7VDP3 Pol protein

8.9e-122

95.96

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG RLDF+ AFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ+IRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVL
        RKDLEF++GDKVFLKVAPMKGVL
Subjt:  RKDLEFDVGDKVFLKVAPMKGVL

Q84KB0 Pol protein

2.6e-121

95.96

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTY ASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMG RLDF+ AFHPQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR
        LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGM PFEALYG+CCRSPVCWGEVGEQRLMGPELVQSTNEAIQ+IRSRM TAQSRQKSYADVR
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVL
        RKDLEF+VGDKVFLKVAPMKGVL
Subjt:  RKDLEFDVGDKVFLKVAPMKGVL

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

3.8e-29

33.64

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   +  A + A+++   ++   G P  I++D D  FTS+ WK         + F+  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++  + T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADV

Query:  RRKDL-EFDVGDKVFLK
        + +++ EF  GD V +K
Subjt:  RRKDL-EFDVGDKVFLK

P0CT41 Transposon Tf2-12 polyprotein

3.8e-29

33.64

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   +  A + A+++   ++   G P  I++D D  FTS+ WK         + F+  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++  + T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADV

Query:  RRKDL-EFDVGDKVFLK
        + +++ EF  GD V +K
Subjt:  RRKDL-EFDVGDKVFLK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

1.7e-29

34.72

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDF+TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   +G++   ++A HPQTDGQ+ER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYAD
          Q L  +LRA       +W  +L  +EF YN++   T+G +PFE   G    +P      EV  +     EL +       + + +++ AQ   ++  +
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFL
         RRK L  ++GD V +
Subjt:  VRRKDLEFDVGDKVFL

Q99315 Transposon Ty3-G Gag-Pol polyprotein

5.9e-30

35.19

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDF+TGLP T     +I VVVDR +K AHF+  + T  A++   L    I   HG P +I SDRD R T+  ++ L   +G++   ++A HPQTDGQ+ER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYAD
          Q L  +LRA A     +W  +L  +EF YN++   T+G +PFE   G    +P      EV  +     EL +       + + +++ AQ   ++  +
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWG--EVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYAD

Query:  VRRKDLEFDVGDKVFL
         RRK L  ++GD V +
Subjt:  VRRKDLEFDVGDKVFL

Q9UR07 Transposon Tf2-11 polyprotein

3.8e-29

33.64

Show/hide

Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER
        MDFIT LP +  G+  ++VVVDR +K A  VP   +  A + A+++   ++   G P  I++D D  FTS+ WK         + F+  + PQTDGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTER

Query:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADV
         NQ +E +LR      P +W  H+ L++ +YNN+  +   MTPFE ++      SP+   E+        E  Q T +  Q ++  + T   + K Y D+
Subjt:  LNQVLEDMLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYG-KCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADV

Query:  RRKDL-EFDVGDKVFLK
        + +++ EF  GD V +K
Subjt:  RRKDL-EFDVGDKVFLK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTTCATTACAGGACTGCCAAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTTGACAGACTTACCAAATCAGCGCACTTCGTCCCGGGTAAATCCACCTA
TATCGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTAAGACTACATGGAGTGCCGGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTCTGGA
AGGGTTTGCAGACTGCTATGGGCATGAGGTTAGACTTTAATGCAGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAAGTTTTAGAGGATATGTTGCGA
GCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTGCATTTGATGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGACACCATTTGAGGCCTT
GTACGGCAAATGTTGTAGATCCCCTGTTTGCTGGGGTGAGGTGGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAATCTACTAACGAAGCGATACAGAGAATTAGAT
CACGTATGCAAACCGCACAGAGTAGGCAGAAGAGTTATGCTGATGTTAGACGGAAGGATCTTGAGTTTGATGTGGGGGACAAGGTGTTCTTGAAGGTAGCACCTATGAAA
GGTGTCTTATGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYIASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGMRLDFNAAFHPQTDGQTERLNQVLEDMLR
ACALEFPGSWDSHLHLMEFAYNNSYQATIGMTPFEALYGKCCRSPVCWGEVGEQRLMGPELVQSTNEAIQRIRSRMQTAQSRQKSYADVRRKDLEFDVGDKVFLKVAPMK
GVL

Cmc04g0108111 (gene) of Melon (Charmono) v1.1 genome