; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc04g0108121 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0108121
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr04:27048073..27048798
RNA-Seq ExpressionCmc04g0108121
SyntenyCmc04g0108121
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR041588 - Integrase zinc-binding domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037244.1 reverse transcriptase [Cucumis melo var. makuwa]2.8e-12396.17Show/hide
Query:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
        AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GKANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGA
Subjt:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV
        VTMQLAQLTVQPTLRQRIIDA+SNDPYLVEKRGLAE GQAVEFS+SSDGGLLFERRLCVPSDSAIKTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRN+
Subjt:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV

Query:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
        KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
Subjt:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

KAA0054231.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.3e-12497.02Show/hide
Query:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
        AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYHLGKANVVADA SRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
Subjt:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV
        VTMQLAQLTVQ TLRQRIIDA+SNDPYLVEKRGLAEAGQA+EFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRN+
Subjt:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV

Query:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
        KREVAEFVSKCLVC+QVKAPRQKPAGLLQPLSIPE
Subjt:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

KAA0057672.1 pol protein [Cucumis melo var. makuwa]3.6e-12395.32Show/hide
Query:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
        AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GKANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGA
Subjt:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV
        VTMQLAQLTVQPTLRQRIIDA+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSA+KTELL++AHSSPFSMHPGSTKMYQDLKR+YWWRN+
Subjt:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV

Query:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
        KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
Subjt:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

KAA0059062.1 pol protein [Cucumis melo var. makuwa]2.1e-12396.17Show/hide
Query:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
        AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GKANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGA
Subjt:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV
        VTMQLAQLTVQPTLRQRIIDA+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSAIKTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRN+
Subjt:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV

Query:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
        KREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPE
Subjt:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

KAA0062112.1 pol protein [Cucumis melo var. makuwa]2.8e-12395.74Show/hide
Query:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
        AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GKANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGA
Subjt:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV
        VTMQLAQLTVQPTLRQRIIDA+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSA+KTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRN+
Subjt:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV

Query:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
        KREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPE
Subjt:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

TrEMBL top hitse value%identityAlignment
A0A5A7T190 Reverse transcriptase1.3e-12396.17Show/hide
Query:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
        AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GKANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGA
Subjt:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV
        VTMQLAQLTVQPTLRQRIIDA+SNDPYLVEKRGLAE GQAVEFS+SSDGGLLFERRLCVPSDSAIKTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRN+
Subjt:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV

Query:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
        KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
Subjt:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

A0A5A7UL17 Reverse transcriptase3.5e-12497.02Show/hide
Query:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
        AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYHLGKANVVADA SRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
Subjt:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV
        VTMQLAQLTVQ TLRQRIIDA+SNDPYLVEKRGLAEAGQA+EFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRN+
Subjt:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV

Query:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
        KREVAEFVSKCLVC+QVKAPRQKPAGLLQPLSIPE
Subjt:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

A0A5A7UP94 Pol protein1.8e-12395.32Show/hide
Query:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
        AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GKANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGA
Subjt:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV
        VTMQLAQLTVQPTLRQRIIDA+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSA+KTELL++AHSSPFSMHPGSTKMYQDLKR+YWWRN+
Subjt:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV

Query:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
        KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
Subjt:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

A0A5A7UT37 Reverse transcriptase1.0e-12396.17Show/hide
Query:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
        AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GKANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGA
Subjt:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV
        VTMQLAQLTVQPTLRQRIIDA+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSAIKTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRN+
Subjt:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV

Query:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
        KREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPE
Subjt:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

A0A5A7V1N3 Reverse transcriptase1.3e-12395.74Show/hide
Query:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA
        AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELN RQRRWLELVKDYDCEILYH GKANVVADA SRKVSHSAAL+TRQAPLHRDLERAEIAVSVGA
Subjt:  AVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGA

Query:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV
        VTMQLAQLTVQPTLRQRIIDA+SNDPYLVEKRGLAEAGQAVEFS+SSDGGLLFERRLCVPSDSA+KTELLS+AHSSPFSMHPGSTKMYQDLKRVYWWRN+
Subjt:  VTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNV

Query:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE
        KREVAEFVS+CLVCQQVKAPRQKPAGLLQPLSIPE
Subjt:  KREVAEFVSKCLVCQQVKAPRQKPAGLLQPLSIPE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein6.0e-2028.69Show/hide
Query:  AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAV
        A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y  G AN +ADA SR       +V    P+ +D E   I  
Subjt:  AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAV

Query:  SVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRV
                + Q+++    + +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ K H     +HPG   +   + R 
Subjt:  SVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRV

Query:  YWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL
        + W+ +++++ E+V  C  CQ  K+   KP G LQP+
Subjt:  YWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL

P0CT35 Transposon Tf2-2 polyprotein6.0e-2028.69Show/hide
Query:  AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAV
        A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y  G AN +ADA SR       +V    P+ +D E   I  
Subjt:  AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAV

Query:  SVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRV
                + Q+++    + +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ K H     +HPG   +   + R 
Subjt:  SVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRV

Query:  YWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL
        + W+ +++++ E+V  C  CQ  K+   KP G LQP+
Subjt:  YWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL

P0CT36 Transposon Tf2-3 polyprotein6.0e-2028.69Show/hide
Query:  AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAV
        A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y  G AN +ADA SR       +V    P+ +D E   I  
Subjt:  AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAV

Query:  SVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRV
                + Q+++    + +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ K H     +HPG   +   + R 
Subjt:  SVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRV

Query:  YWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL
        + W+ +++++ E+V  C  CQ  K+   KP G LQP+
Subjt:  YWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL

P0CT41 Transposon Tf2-12 polyprotein6.0e-2028.69Show/hide
Query:  AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAV
        A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y  G AN +ADA SR       +V    P+ +D E   I  
Subjt:  AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAV

Query:  SVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRV
                + Q+++    + +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ K H     +HPG   +   + R 
Subjt:  SVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRV

Query:  YWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL
        + W+ +++++ E+V  C  CQ  K+   KP G LQP+
Subjt:  YWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL

Q9UR07 Transposon Tf2-11 polyprotein6.0e-2028.69Show/hide
Query:  AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAV
        A++ +LK WRHYL    E  +I TDH++L    T +    N R  RW   ++D++ EI Y  G AN +ADA SR       +V    P+ +D E   I  
Subjt:  AVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKE--LNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAV

Query:  SVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRV
                + Q+++    + +++   +ND  L+    L    + VE +I    GLL   +  + +P+D+ +   ++ K H     +HPG   +   + R 
Subjt:  SVGAVTMQLAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERR--LCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRV

Query:  YWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL
        + W+ +++++ E+V  C  CQ  K+   KP G LQP+
Subjt:  YWWRNVKREVAEFVSKCLVCQQVKAPRQKPAGLLQPL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAGTTTTGGCTGAAGCAGTGGTTTTTGCATTGAAAATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTT
TACTCAGAAGGAATTGAATACAAGACAACGAAGATGGCTTGAGTTAGTGAAGGATTACGACTGTGAGATACTGTATCATCTAGGCAAGGCAAATGTGGTAGCTGATGCTT
TTAGTAGAAAGGTATCACATTCAGCAGCACTTGTTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTCACTATGCAG
TTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCGGAGTAACGATCCTTATTTGGTTGAGAAGCGTGGCCTAGCAGAGGCAGGGCAAGCGGT
TGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGGCGCCTCTGTGTGCCATCAGATAGTGCGATTAAAACAGAATTATTATCTAAGGCTCACAGTTCCCCAT
TTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACGTGAAGAGGGAGGTAGCAGAATTTGTTAGTAAATGCTTGGTGTGT
CAGCAGGTTAAGGCACCAAGACAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAGTTTTGGCTGAAGCAGTGGTTTTTGCATTGAAAATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTT
TACTCAGAAGGAATTGAATACAAGACAACGAAGATGGCTTGAGTTAGTGAAGGATTACGACTGTGAGATACTGTATCATCTAGGCAAGGCAAATGTGGTAGCTGATGCTT
TTAGTAGAAAGGTATCACATTCAGCAGCACTTGTTACCCGACAGGCCCCATTGCATCGAGATCTTGAGCGGGCTGAGATTGCAGTGTCAGTGGGGGCAGTCACTATGCAG
TTAGCCCAGTTGACGGTACAGCCGACTTTGAGGCAAAGGATCATTGATGCTCGGAGTAACGATCCTTATTTGGTTGAGAAGCGTGGCCTAGCAGAGGCAGGGCAAGCGGT
TGAGTTCTCCATATCCTCTGATGGTGGACTTTTGTTTGAGAGGCGCCTCTGTGTGCCATCAGATAGTGCGATTAAAACAGAATTATTATCTAAGGCTCACAGTTCCCCAT
TTTCCATGCACCCAGGTAGTACGAAGATGTATCAGGACCTGAAGCGGGTTTATTGGTGGCGTAACGTGAAGAGGGAGGTAGCAGAATTTGTTAGTAAATGCTTGGTGTGT
CAGCAGGTTAAGGCACCAAGACAGAAACCAGCGGGTTTATTACAACCCTTGAGCATACCGGAATGA
Protein sequenceShow/hide protein sequence
MRVLAEAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNTRQRRWLELVKDYDCEILYHLGKANVVADAFSRKVSHSAALVTRQAPLHRDLERAEIAVSVGAVTMQ
LAQLTVQPTLRQRIIDARSNDPYLVEKRGLAEAGQAVEFSISSDGGLLFERRLCVPSDSAIKTELLSKAHSSPFSMHPGSTKMYQDLKRVYWWRNVKREVAEFVSKCLVC
QQVKAPRQKPAGLLQPLSIPE