CuGenDBv2

Gene ID	Cmc04g0108131
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr04:27076477..27077379
RNA-Seq Expression	Cmc04g0108131
Synteny	Cmc04g0108131
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR036397 - Ribonuclease H superfamily IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026271.1 pol protein [Cucumis melo var. makuwa]

1.2e-160

94.67

Show/hide

Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        MSFG TNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VL+TL  NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDP KIEAVT W
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
         +PSTVSEVRSFLGLAGYYRRFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLKQK++TAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR
        SRQLKSHE NYP+HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNM QRRWLELVKDYDCEILYHPGKANVVADALSRK+SHSAALITR
Subjt:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

KAA0042119.1 pol protein [Cucumis melo var. makuwa]

1.2e-160

94.67

Show/hide

Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        MSFG TNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TL  NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDP KIEAVTSW
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
         +PSTVSEVRSFLGLAGYYRRFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLKQK++TAP+LTVPDGSGSFVIYSDAS+KGLGCVLMQQGKVVAYA
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR
        SRQLKSHE NYP+HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNM QRRWLELVKDYDCEILYHPGKANVVADALSRK SHSAALITR
Subjt:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

KAA0046094.1 gag protease polyprotein [Cucumis melo var. makuwa]

1.6e-160

94.67

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Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        MSFG TNAPAVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TL  NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDP KIEAVT W
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
         +PSTVSEVRSFLGLAGYYRRFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLKQK++TAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR
        SRQLKSHE NYP+HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNM QRRWLELVKDYDCEILYHPGKANVVADALSRK+SHSAALITR
Subjt:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

4.2e-161

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Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        MSFG TNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TL  NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDP KIEAVT W
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
         +PSTVSEVRSFLGLAGYYRRFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLKQK++TAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR
        SRQLKSHE NYP+HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNM QRRWLELVKDYDCEILYHPGKANVVADALSRK+SHSAALITR
Subjt:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

KAA0057672.1 pol protein [Cucumis melo var. makuwa]

1.6e-160

94.67

Show/hide

Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        MSFG TNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TL  NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDP KIEAVT W
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
         +PSTVSEVRSFLGLAGYYRRFVENFS  ATPLTQLTRKGAPFVWSKACEDSFQNLKQK++TAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR
        SRQLKSHE NYP+HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNM QRRWLELVKDYDCEILYHPGKANVVADALSRK+SHSAALITR
Subjt:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPZ2 Pol protein

5.9e-161

94.67

Show/hide

Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        MSFG TNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VL+TL  NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDP KIEAVT W
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
         +PSTVSEVRSFLGLAGYYRRFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLKQK++TAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR
        SRQLKSHE NYP+HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNM QRRWLELVKDYDCEILYHPGKANVVADALSRK+SHSAALITR
Subjt:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

A0A5A7TLA3 Pol protein

5.9e-161

94.67

Show/hide

Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        MSFG TNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TL  NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDP KIEAVTSW
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
         +PSTVSEVRSFLGLAGYYRRFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLKQK++TAP+LTVPDGSGSFVIYSDAS+KGLGCVLMQQGKVVAYA
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR
        SRQLKSHE NYP+HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNM QRRWLELVKDYDCEILYHPGKANVVADALSRK SHSAALITR
Subjt:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

A0A5A7TSQ8 Reverse transcriptase

7.7e-161

94.67

Show/hide

Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        MSFG TNAPAVFM+LMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TL  NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDP KIEAVT W
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
         +PSTVSEVRSFLGLAGYYRRFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLKQK++TAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR
        SRQLKSHE NYP+HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNM QRRWLELVKDYDCEILYHPGKANVVADALSRK+SHSAALITR
Subjt:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

A0A5A7U330 Reverse transcriptase

2.0e-161

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Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        MSFG TNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TL  NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDP KIEAVT W
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
         +PSTVSEVRSFLGLAGYYRRFVENFS IATPLTQLTRKGAPFVWSKACEDSFQNLKQK++TAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR
        SRQLKSHE NYP+HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNM QRRWLELVKDYDCEILYHPGKANVVADALSRK+SHSAALITR
Subjt:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

A0A5A7UP94 Pol protein

7.7e-161

94.67

Show/hide

Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        MSFG TNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVL+TL  NKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDP KIEAVT W
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
         +PSTVSEVRSFLGLAGYYRRFVENFS  ATPLTQLTRKGAPFVWSKACEDSFQNLKQK++TAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYA

Query:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR
        SRQLKSHE NYP+HDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNM QRRWLELVKDYDCEILYHPGKANVVADALSRK+SHSAALITR
Subjt:  SRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

2.2e-59

41.03

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Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        M FG  NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V E L    L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY
        P P+   E+++FLGL GYYR+F+ NF+ IA P+T+  +K      +    DS F+ LK  I   P+L VPD +  F + +DAS   LG VL Q G  ++Y
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY

Query:  ASRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSR
         SR L  HE NY + + EL A+V+A K +RHYL G   +I +DH+ L + +  K+ N    RW   + ++D +I Y  GK N VADALSR
Subjt:  ASRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSR

P0CT41 Transposon Tf2-12 polyprotein

1.9e-47

35.31

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Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        M +G + APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VL+ L    L    +KCEF   QV F+G+ +S+ G +     I+ V  W
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----
         QP    E+R FLG   Y R+F+   S +  PL  L +K   + W+     + +N+KQ +++ PVL   D S   ++ +DAS   +G VL Q+       
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGK-----

Query:  VVAYASRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKELNMTQR--RWLELVKDYDCEILYHPGKANVVADALSRKI
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L    T +     +R  RW   ++D++ EI Y PG AN +ADALSR +
Subjt:  VVAYASRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSLKYFFTQKELNMTQR--RWLELVKDYDCEILYHPGKANVVADALSRKI

Query:  SHS
          +
Subjt:  SHS

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

3.0e-53

35.97

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Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        + FG  NA ++F   ++ V RE +     V++DD++I+S+ E++H  H+  VL+ L+   +     K  F+ + V +LG +VSK G   DP K++A+  +
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKIITAPV-LTVPDGSGSFVIYSDASKKGLGC
        P+P  V +VRSFLGLA YYR F+++F+ IA P+T + +           K  P  +++   ++FQ L+  + +  V L  PD    F + +DAS  G+G 
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKIITAPV-LTVPDGSGSFVIYSDASKKGLGC

Query:  VLMQQGKVVAYASRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEK-IQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADAL
        VL Q+G+ +   SR LK  E NY +++ EL A+V+AL   +++LYG + I IFTDH+ L +    +  N   +RW   +  ++ ++ Y PGK N VADAL
Subjt:  VLMQQGKVVAYASRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEK-IQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADAL

Query:  SRK
        SR+
Subjt:  SRK

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.4e-58

40.34

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Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        M FG  NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L    L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+ S+
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY
        P P+   E+R+FLGL GYYR+F+ N++ IA P+T   +K       K    ++F+ LK  II  P+L +PD    FV+ +DAS   LG VL Q G  +++
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAY

Query:  ASRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSR
         SR L  HE NY + + EL A+V+A K +RHYL G +  I +DH+ L++    KE      RW   + +Y  +I Y  GK N VADALSR
Subjt:  ASRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

6.1e-54

35.41

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Query:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW
        + FG  NAPA+F  +++ + RE +     V+IDDI+++S+    H ++LR+VL +L    L     K  F   QV FLG++V+  G+  DP K+ A++  
Subjt:  MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSW

Query:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCV
        P P++V E++ FLG+  YYR+F+++++ +A PLT LTR              P    +    SF +LK  + ++ +L  P  +  F + +DAS   +G V
Subjt:  PQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCV

Query:  LMQ----QGKVVAYASRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVA
        L Q    + + +AY SR L   E NY + + E+ A++++L   R YLYG   I+++TDH+ L +    +  N   +RW   +++Y+CE++Y PGK+NVVA
Subjt:  LMQ----QGKVVAYASRQLKSHEHNYPSHDLELAAVVFALKIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVA

Query:  DALSR
        DALSR
Subjt:  DALSR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

6.5e-27

44.27

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Query:  HLRMVLETLLANKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPTKIEAVTSWPQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVW
        HL MVL+    ++ YA   KC F   Q+++LG  H++S  GVS DP K+EA+  WP+P   +E+R FLGL GYYRRFV+N+  I  PLT+L +K +   W
Subjt:  HLRMVLETLLANKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPTKIEAVTSWPQPSTVSEVRSFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVW

Query:  SKACEDSFQNLKQKIITAPVLTVPDGSGSFV
        ++    +F+ LK  + T PVL +PD    FV
Subjt:  SKACEDSFQNLKQKIITAPVLTVPDGSGSFV

Sequences

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CDS sequence

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ATGTCTTTTGGTTTCACGAATGCTCCAGCAGTGTTTATGGATTTGATGAACAGAGTTTTCAGGGAGTTCCTAGACACTTTTGTGATCGTGTTCATTGACGATATTTTGAT
ATATTCCAAGACAGAGGCAGAGCATGAGGAGCATTTACGCATGGTTCTAGAAACCCTTCTAGCTAATAAATTGTATGCAAAGTTCTCAAAATGTGAGTTTTGGTTGAAGC
AGGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGTTTCTGTGGATCCAACTAAGATAGAGGCAGTCACCAGTTGGCCCCAACCTTCCACAGTCAGTGAGGTTCGT
AGCTTTCTGGGTTTAGCAGGTTATTACCGACGGTTTGTGGAGAACTTCTCCCATATAGCTACTCCTCTTACTCAGTTGACCAGAAAGGGAGCCCCTTTTGTTTGGAGTAA
GGCCTGTGAGGATAGTTTTCAGAACCTTAAACAGAAAATCATCACTGCACCAGTTCTTACTGTACCTGATGGTTCAGGGAGTTTTGTGATTTACAGTGATGCTTCGAAGA
AAGGTTTGGGTTGTGTTCTGATGCAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCATAATTACCCTTCCCATGATTTAGAGTTGGCAGCG
GTAGTCTTTGCACTAAAGATATGGAGACATTACTTATATGGTGAGAAGATACAGATCTTTACAGATCATAAAAGCTTGAAATACTTCTTCACTCAGAAGGAGTTGAATAT
GACGCAGCGAAGATGGCTTGAATTAGTAAAGGATTACGATTGTGAGATATTGTATCATCCAGGCAAGGCGAATGTGGTAGCTGATGCTCTTAGTAGAAAAATATCACATT
CAGCAGCACTTATTACCCGATAA

mRNA sequence

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Protein sequence

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MSFGFTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLETLLANKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPTKIEAVTSWPQPSTVSEVR
SFLGLAGYYRRFVENFSHIATPLTQLTRKGAPFVWSKACEDSFQNLKQKIITAPVLTVPDGSGSFVIYSDASKKGLGCVLMQQGKVVAYASRQLKSHEHNYPSHDLELAA
VVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMTQRRWLELVKDYDCEILYHPGKANVVADALSRKISHSAALITR

Cmc04g0108131 (gene) of Melon (Charmono) v1.1 genome