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Cmc04g0108251 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0108251
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBED-type domain-containing protein
Genome locationCMiso1.1chr04:27389996..27390361
RNA-Seq ExpressionCmc04g0108251
SyntenyCmc04g0108251
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR007021 - Domain of unknown function DUF659
IPR012337 - Ribonuclease H-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040972.1 uncharacterized protein E6C27_scaffold125G001750 [Cucumis melo var. makuwa]3.3e-4886.21Show/hide
Query:  LFSLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRK
        L +++  RLL+ KRPQLIWSPCAAHCLDLMLEDI KISNIRKALKRGMEI+NFIYV PGLLNMM+RFTNQK+LVR AKTRFATACITLSSIHHQKNNLRK
Subjt:  LFSLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRK

Query:  MCTSDEWKDSKWSKKQ
        M TSDEWKDSKWSK+Q
Subjt:  MCTSDEWKDSKWSKKQ

KAA0054275.1 uncharacterized protein E6C27_scaffold131G002320 [Cucumis melo var. makuwa]6.6e-4995.19Show/hide
Query:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
        +++ ERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMM+RFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
Subjt:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC

Query:  TSDE
        TSDE
Subjt:  TSDE

KAA0068068.1 hypothetical protein E6C27_scaffold238G00160 [Cucumis melo var. makuwa]4.3e-4886.84Show/hide
Query:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
        +++  RLL+ KRPQLIWSPCAAHCLDLMLEDI KISNIRKALKRGMEI+NFIYV PGLLNMM+RFTNQK+LVR AKTRFATACITLSSIHHQKNNLRKM 
Subjt:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC

Query:  TSDEWKDSKWSKKQ
        TSDEWKDSKWSK+Q
Subjt:  TSDEWKDSKWSKKQ

TYK14984.1 uncharacterized protein E5676_scaffold45G00150 [Cucumis melo var. makuwa]2.8e-5595.61Show/hide
Query:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
        +++ ERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMM+RFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
Subjt:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC

Query:  TSDEWKDSKWSKKQ
        TSDEWKDSKWSKKQ
Subjt:  TSDEWKDSKWSKKQ

TYK26052.1 hypothetical protein E5676_scaffold1185G00050 [Cucumis melo var. makuwa]4.3e-4886.84Show/hide
Query:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
        +++  RLL+ KRPQLIWSPCAAHCLDLMLEDI KISNIRKALKRGMEI+NFIYV PGLLNMM+RFTNQK+LVR AKTRFATACITLSSIHHQKNNLRKM 
Subjt:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC

Query:  TSDEWKDSKWSKKQ
        TSDEWKDSKWSK+Q
Subjt:  TSDEWKDSKWSKKQ

TrEMBL top hitse value%identityAlignment
A0A5A7TBY2 Uncharacterized protein1.6e-4886.21Show/hide
Query:  LFSLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRK
        L +++  RLL+ KRPQLIWSPCAAHCLDLMLEDI KISNIRKALKRGMEI+NFIYV PGLLNMM+RFTNQK+LVR AKTRFATACITLSSIHHQKNNLRK
Subjt:  LFSLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRK

Query:  MCTSDEWKDSKWSKKQ
        M TSDEWKDSKWSK+Q
Subjt:  MCTSDEWKDSKWSKKQ

A0A5A7TY62 BED-type domain-containing protein2.1e-4886.84Show/hide
Query:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
        +++  RLL+ KRPQLIWSPCAAHCLDLMLEDI KISNIRKALKRGMEI+NFIYV PGLLNMM+RFTNQK+LVR AKTRFATACITLSSIHHQKNNLRKM 
Subjt:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC

Query:  TSDEWKDSKWSKKQ
        TSDEWKDSKWSK+Q
Subjt:  TSDEWKDSKWSKKQ

A0A5A7UKS0 DUF659 domain-containing protein3.2e-4995.19Show/hide
Query:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
        +++ ERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMM+RFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
Subjt:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC

Query:  TSDE
        TSDE
Subjt:  TSDE

A0A5D3CVM2 DUF659 domain-containing protein1.3e-5595.61Show/hide
Query:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
        +++ ERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMM+RFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
Subjt:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC

Query:  TSDEWKDSKWSKKQ
        TSDEWKDSKWSKKQ
Subjt:  TSDEWKDSKWSKKQ

A0A5D3DXN3 BED-type domain-containing protein2.1e-4886.84Show/hide
Query:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC
        +++  RLL+ KRPQLIWSPCAAHCLDLMLEDI KISNIRKALKRGMEI+NFIYV PGLLNMM+RFTNQK+LVR AKTRFATACITLSSIHHQKNNLRKM 
Subjt:  SLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMC

Query:  TSDEWKDSKWSKKQ
        TSDEWKDSKWSK+Q
Subjt:  TSDEWKDSKWSKKQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G36095.1 DNA binding1.0e-1839.81Show/hide
Query:  RLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSDEW
        +L    RP L W+PCAAHC+ LMLEDI KIS ++  + + +   ++IY H  L+NMM++   + K  ++          T+   H Q+ NLR   TS EW
Subjt:  RLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSDEW

Query:  KDSKWSKK
         DSKW K+
Subjt:  KDSKWSKK

AT3G22220.1 hAT transposon superfamily1.2e-1641.58Show/hide
Query:  PQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSDEWKDSKWSK
        P L W PCAAHC+D MLE+  K+  IR+ +++   +T  IY H G+LN+M++FT    +V+   T  AT   T+  I   K  L+ M TS EW D  +SK
Subjt:  PQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSDEWKDSKWSK

Query:  K
        +
Subjt:  K

AT3G22220.2 hAT transposon superfamily1.2e-1641.58Show/hide
Query:  PQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSDEWKDSKWSK
        P L W PCAAHC+D MLE+  K+  IR+ +++   +T  IY H G+LN+M++FT    +V+   T  AT   T+  I   K  L+ M TS EW D  +SK
Subjt:  PQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSDEWKDSKWSK

Query:  K
        +
Subjt:  K

AT4G15020.1 hAT transposon superfamily7.1e-1740.59Show/hide
Query:  PQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSDEWKDSKWSK
        P L W PCAAHC+D MLE+  K+  I + +++   IT F+Y H G+LN+M +FT+   ++  A +  AT   TL  I   K+NL+ M TS EW +  +S+
Subjt:  PQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSDEWKDSKWSK

Query:  K
        +
Subjt:  K

AT4G15020.2 hAT transposon superfamily7.1e-1740.59Show/hide
Query:  PQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSDEWKDSKWSK
        P L W PCAAHC+D MLE+  K+  I + +++   IT F+Y H G+LN+M +FT+   ++  A +  AT   TL  I   K+NL+ M TS EW +  +S+
Subjt:  PQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSDEWKDSKWSK

Query:  K
        +
Subjt:  K


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAATGTGTACTTATTTTCTTTGTTAATAGAGAGATTGTTAAAAGTAAAGCGACCACAATTAATATGGTCTCCATGTGCCGCTCATTGTTTAGATTTGATGTTGGA
GGATATAGACAAGATCTCCAATATTCGCAAAGCATTGAAAAGAGGCATGGAGATTACCAACTTCATATATGTTCATCCTGGATTATTAAACATGATGCAACGATTTACTA
ACCAAAAGAAGTTAGTTAGACTAGCTAAGACTCGCTTTGCTACTGCTTGCATTACATTATCGAGTATACATCATCAAAAGAACAACTTAAGGAAGATGTGTACTTCAGAT
GAATGGAAGGATAGCAAATGGAGCAAGAAGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAATGTGTACTTATTTTCTTTGTTAATAGAGAGATTGTTAAAAGTAAAGCGACCACAATTAATATGGTCTCCATGTGCCGCTCATTGTTTAGATTTGATGTTGGA
GGATATAGACAAGATCTCCAATATTCGCAAAGCATTGAAAAGAGGCATGGAGATTACCAACTTCATATATGTTCATCCTGGATTATTAAACATGATGCAACGATTTACTA
ACCAAAAGAAGTTAGTTAGACTAGCTAAGACTCGCTTTGCTACTGCTTGCATTACATTATCGAGTATACATCATCAAAAGAACAACTTAAGGAAGATGTGTACTTCAGAT
GAATGGAAGGATAGCAAATGGAGCAAGAAGCAATAA
Protein sequenceShow/hide protein sequence
MLNVYLFSLLIERLLKVKRPQLIWSPCAAHCLDLMLEDIDKISNIRKALKRGMEITNFIYVHPGLLNMMQRFTNQKKLVRLAKTRFATACITLSSIHHQKNNLRKMCTSD
EWKDSKWSKKQ