CuGenDBv2

Gene ID	Cmc04g0108271
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr04:27409419..27409841
RNA-Seq Expression	Cmc04g0108271
Synteny	Cmc04g0108271
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-70

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Query:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
        MPRRSGR+V QPNRYLGLTETQVVIPDDGVEDPLSYKQA+NDVDKDQWVKAM+LEMESMYFNSVWELVDLP+GVKPIGCKWIYKRKRDSAGKVQTFKARL
Subjt:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        VAK YTQR+GVDYEETFSPVAMLKSIRILLSIATFYDYEI
Subjt:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

KAA0059226.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-70

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Query:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
        MPRRSGR+V QPNRYLGLTETQVVIPDDGVEDPLSYKQA+NDVDKDQWVKAM+LEMESMYFNSVWELVDLP+GVKPIGCKWIYKRKRDSAGKVQTFKARL
Subjt:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        VAK YTQR+GVDYEETFSPVAMLKSIRILLSIATFYDYEI
Subjt:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

TYK02840.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-70

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Query:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
        MPRRSGR+V QPNRYLGLTETQVVIPDDGVEDPLSYKQA+NDVDKDQWVKAM+LEMESMYFNSVWELVDLP+GVKPIGCKWIYKRKRDSAGKVQTFKARL
Subjt:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        VAK YTQR+GVDYEETFSPVAMLKSIRILLSIATFYDYEI
Subjt:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

TYK14980.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-72

98.57

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Query:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
        MPRRSGRIVPQPN YLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
Subjt:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        VAK YTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
Subjt:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

TYK15984.1 gag/pol protein [Cucumis melo var. makuwa]

1.6e-70

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Query:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
        MPRRSGR+V QPNRYLGLTETQVVIPDDGVEDPLSYKQA+NDVDKDQWVKAM+LEMESMYFNSVWELVDLP+GVKPIGCKWIYKRKRDSAGKVQTFKARL
Subjt:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        VAK YTQR+GVDYEETFSPVAMLKSIRILLSIATFYDYEI
Subjt:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZD0 Gag/pol protein

7.7e-71

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Query:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
        MPRRSGR+V QPNRYLGLTETQVVIPDDGVEDPLSYKQA+NDVDKDQWVKAM+LEMESMYFNSVWELVDLP+GVKPIGCKWIYKRKRDSAGKVQTFKARL
Subjt:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        VAK YTQR+GVDYEETFSPVAMLKSIRILLSIATFYDYEI
Subjt:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

A0A5A7UYE8 Gag/pol protein

7.7e-71

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Query:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
        MPRRSGR+V QPNRYLGLTETQVVIPDDGVEDPLSYKQA+NDVDKDQWVKAM+LEMESMYFNSVWELVDLP+GVKPIGCKWIYKRKRDSAGKVQTFKARL
Subjt:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        VAK YTQR+GVDYEETFSPVAMLKSIRILLSIATFYDYEI
Subjt:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

A0A5D3BUN8 Gag/pol protein

7.7e-71

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Query:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
        MPRRSGR+V QPNRYLGLTETQVVIPDDGVEDPLSYKQA+NDVDKDQWVKAM+LEMESMYFNSVWELVDLP+GVKPIGCKWIYKRKRDSAGKVQTFKARL
Subjt:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        VAK YTQR+GVDYEETFSPVAMLKSIRILLSIATFYDYEI
Subjt:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

A0A5D3CU90 Gag/pol protein

8.2e-73

98.57

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Query:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
        MPRRSGRIVPQPN YLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
Subjt:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        VAK YTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
Subjt:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

A0A5D3CYF4 Gag/pol protein

7.7e-71

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Query:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL
        MPRRSGR+V QPNRYLGLTETQVVIPDDGVEDPLSYKQA+NDVDKDQWVKAM+LEMESMYFNSVWELVDLP+GVKPIGCKWIYKRKRDSAGKVQTFKARL
Subjt:  MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARL

Query:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        VAK YTQR+GVDYEETFSPVAMLKSIRILLSIATFYDYEI
Subjt:  VAKWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

4.4e-15

33.33

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Query:  PLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKGVDYEETFSPVAMLKSIRILLSI
        P S+ +     DK  W +A+N E+ +   N+ W +   P+    +  +W++  K +  G    +KARLVA+ +TQ+  +DYEETF+PVA + S R +LS+
Subjt:  PLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKGVDYEETFSPVAMLKSIRILLSI

Query:  ATFYDYEI
           Y+ ++
Subjt:  ATFYDYEI

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.3e-24

42.75

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Query:  RRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVA
        RRS R   +  RY   +   V+I DD   +P S K+ ++  +K+Q +KAM  EMES+  N  ++LV+LP G +P+ CKW++K K+D   K+  +KARLV 
Subjt:  RRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVA

Query:  KWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI
        K + Q+KG+D++E FSPV  + SIR +LS+A   D E+
Subjt:  KWYTQRKGVDYEETFSPVAMLKSIRILLSIATFYDYEI

P92520 Uncharacterized mitochondrial protein AtMg00820

1.4e-13

40.7

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Query:  WVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKGVDYEETFSPVAMLKSIRILLSIA
        W +AM  E++++  N  W LV  P     +GCKW++K K  S G +   KARLVAK + Q +G+ + ET+SPV    +IR +L++A
Subjt:  WVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKGVDYEETFSPVAMLKSIRILLSIA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.2e-17

38.93

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Query:  RSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDG-VKPIGCKWIYKRKRDSAGKVQTFKARLVA
        ++G I P P   L ++            +P +  QA+ D   ++W  AM  E+ +   N  W+LV  P   V  +GC+WI+ +K +S G +  +KARLVA
Subjt:  RSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDG-VKPIGCKWIYKRKRDSAGKVQTFKARLVA

Query:  KWYTQRKGVDYEETFSPVAMLKSIRILLSIA
        K Y QR G+DY ETFSPV    SIRI+L +A
Subjt:  KWYTQRKGVDYEETFSPVAMLKSIRILLSIA

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

1.6e-17

45.92

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Query:  KQAINDVDKDQWVKAMNLEMESMYFNSVWELV-DLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKGVDYEETFSPVAMLKSIRILLSIA
        + AI  +  D+W +AM  E+ +   N  W+LV   P  V  +GC+WI+ +K +S G +  +KARLVAK Y QR G+DY ETFSPV    SIRI+L +A
Subjt:  KQAINDVDKDQWVKAMNLEMESMYFNSVWELV-DLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKGVDYEETFSPVAMLKSIRILLSIA

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.7e-22

42.73

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Query:  EDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKGVDYEETFSPVAMLKSIRILL
        ++P +Y +A   +    W  AM+ E+ +M     WE+  LP   KPIGCKW+YK K +S G ++ +KARLVAK YTQ++G+D+ ETFSPV  L S++++L
Subjt:  EDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKGVDYEETFSPVAMLKSIRILL

Query:  SIATFYDYEI
        +I+  Y++ +
Subjt:  SIATFYDYEI

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)

1.0e-14

40.7

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Query:  WVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKGVDYEETFSPVAMLKSIRILLSIA
        W +AM  E++++  N  W LV  P     +GCKW++K K  S G +   KARLVAK + Q +G+ + ET+SPV    +IR +L++A
Subjt:  WVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKGVDYEETFSPVAMLKSIRILLSIA

Sequences

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CDS sequence

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ATGCCTCGACGCAGTGGAAGGATTGTACCACAACCTAATCGTTATTTGGGTTTAACTGAAACTCAGGTTGTCATACCAGATGATGGTGTTGAGGATCCATTGTCCTATAA
ACAGGCAATAAATGATGTAGATAAAGACCAATGGGTCAAAGCCATGAACCTTGAAATGGAGTCTATGTACTTCAATTCAGTGTGGGAGCTTGTAGATCTACCTGATGGGG
TAAAACCTATAGGGTGTAAATGGATTTATAAGAGAAAGAGAGATTCAGCTGGGAAGGTACAAACCTTCAAAGCTAGACTTGTAGCAAAATGGTATACCCAAAGGAAAGGG
GTTGACTATGAGGAAACTTTTTCCCCTGTTGCTATGTTAAAGTCTATAAGGATTCTCTTGTCCATCGCCACATTTTATGATTATGAAATATGA

mRNA sequence

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Protein sequence

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MPRRSGRIVPQPNRYLGLTETQVVIPDDGVEDPLSYKQAINDVDKDQWVKAMNLEMESMYFNSVWELVDLPDGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKWYTQRKG
VDYEETFSPVAMLKSIRILLSIATFYDYEI

Cmc04g0108271 (gene) of Melon (Charmono) v1.1 genome