CuGenDBv2

Gene ID	Cmc04g0108361
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr04:27569639..27570601
RNA-Seq Expression	Cmc04g0108361
Synteny	Cmc04g0108361
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0033486.1 reverse transcriptase [Cucumis melo var. makuwa]

8.2e-141

81.62

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Query:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS
        MKASKLLSQGTW ILASV+  REPEVSLSSEPVVREYPDVF DELPGLPPPRE++FAIELEPGT PI   P +   AELKELKVQLQELLDKGFIRP+VS
Subjt:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS

Query:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL
        PW APVLFVKKKDGSMRLCIDYRELNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK  F  RYGHYEF+VMSFGLTNAPA+F+
Subjt:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL

Query:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL
        DLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEHLHQ                      KVTFL HV S EGVSVDPAKIEA+T+WPRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL

Query:  GLAGYYRRFMEGCSRIANPLT
        GLAGYYRRF+E  SRIA+PLT
Subjt:  GLAGYYRRFMEGCSRIANPLT

KAA0055932.1 pol protein [Cucumis melo var. makuwa]

1.1e-140

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Query:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS
        MKASKLLS GTW ILASV+  REPEVSLSSEPVVREYPDVF DELPGLPPPRE++FAIELEPGTTPI   P +   AELKELKVQLQELLDKGFIRP+VS
Subjt:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS

Query:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL
        PW APVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK  F  RYGHYEF+VMSFGLTNAPA+F+
Subjt:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL

Query:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL
        DLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEHLHQ                      KVTFL HV S EG SVDPAKIEA+T+WPRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL

Query:  GLAGYYRRFMEGCSRIANPLT
        GLAGYYRRF+E  SRI +PLT
Subjt:  GLAGYYRRFMEGCSRIANPLT

KAA0058812.1 pol protein [Cucumis melo var. makuwa]

2.1e-141

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Query:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS
        MKASKLLSQGTW ILASV+  REPEVSLSSEPVVREYPDVF DELPGLPPPRE++FAIELEPGT PI   P +   AELKELKVQLQELLDKGFIRP+VS
Subjt:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS

Query:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL
        PW APVLFVKKKDGSMRLCIDYRELNKVT+KN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK  FH RYGHYEF+VMSFGLTNAPA+F+
Subjt:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL

Query:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL
        DLMNRVFKDF+D FVIVFIDDIL+YSKTEAEHEEHLHQ                      KVTFL HV S EGVSVDPAKIEA+T+WPRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL

Query:  GLAGYYRRFMEGCSRIANPLT
        GLAGYYRRF+E  SRIA+PLT
Subjt:  GLAGYYRRFMEGCSRIANPLT

KAA0059723.1 pol protein [Cucumis melo var. makuwa]

1.4e-140

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Query:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS
        MKASKLLSQGTW ILASV+  REPEVSLSSEPVVREYPDVF DELPGLPPPRE++FAIELEPGT PI   P +   AELKELKVQLQELLDKGFIRP+VS
Subjt:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS

Query:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL
        PW APVLFVKKKDGSMRLCIDYRELNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK  F  RYGHYEF+VMSFGLTN PA+F+
Subjt:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL

Query:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL
        DLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEHLHQ                      KVTFL HV S EGVSVDPAKIEA+T+WPRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL

Query:  GLAGYYRRFMEGCSRIANPLT
        GLAGYYRRF+E  SRIA+PLT
Subjt:  GLAGYYRRFMEGCSRIANPLT

TYK01306.1 pol protein [Cucumis melo var. makuwa]

1.3e-141

81.93

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Query:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS
        MKASKLLSQGTW ILASV+  REPEVSLSSEPVVREYPDVF DELPGLPPPRE++FAIELEPGT PI   P +   AELKELKVQLQELLDKGFIRP+VS
Subjt:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS

Query:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL
        PW APVLFVKKKDGSMRLCIDYRELNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK  F  RYGHYEFIVMSFGLTNAPA+F+
Subjt:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL

Query:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL
        DLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEHLHQ                      KVTFL HV S EGVSVDPAKIEA+T+WPRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL

Query:  GLAGYYRRFMEGCSRIANPLT
        GLAGYYRRF+E  SRIA+PLT
Subjt:  GLAGYYRRFMEGCSRIANPLT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SU25 Reverse transcriptase

4.0e-141

81.62

Show/hide

Query:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS
        MKASKLLSQGTW ILASV+  REPEVSLSSEPVVREYPDVF DELPGLPPPRE++FAIELEPGT PI   P +   AELKELKVQLQELLDKGFIRP+VS
Subjt:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS

Query:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL
        PW APVLFVKKKDGSMRLCIDYRELNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK  F  RYGHYEF+VMSFGLTNAPA+F+
Subjt:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL

Query:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL
        DLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEHLHQ                      KVTFL HV S EGVSVDPAKIEA+T+WPRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL

Query:  GLAGYYRRFMEGCSRIANPLT
        GLAGYYRRF+E  SRIA+PLT
Subjt:  GLAGYYRRFMEGCSRIANPLT

A0A5A7UJ81 Reverse transcriptase

5.2e-141

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Query:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS
        MKASKLLS GTW ILASV+  REPEVSLSSEPVVREYPDVF DELPGLPPPRE++FAIELEPGTTPI   P +   AELKELKVQLQELLDKGFIRP+VS
Subjt:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS

Query:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL
        PW APVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK  F  RYGHYEF+VMSFGLTNAPA+F+
Subjt:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL

Query:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL
        DLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEHLHQ                      KVTFL HV S EG SVDPAKIEA+T+WPRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL

Query:  GLAGYYRRFMEGCSRIANPLT
        GLAGYYRRF+E  SRI +PLT
Subjt:  GLAGYYRRFMEGCSRIANPLT

A0A5A7USG7 Reverse transcriptase

1.0e-141

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Query:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS
        MKASKLLSQGTW ILASV+  REPEVSLSSEPVVREYPDVF DELPGLPPPRE++FAIELEPGT PI   P +   AELKELKVQLQELLDKGFIRP+VS
Subjt:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS

Query:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL
        PW APVLFVKKKDGSMRLCIDYRELNKVT+KN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK  FH RYGHYEF+VMSFGLTNAPA+F+
Subjt:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL

Query:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL
        DLMNRVFKDF+D FVIVFIDDIL+YSKTEAEHEEHLHQ                      KVTFL HV S EGVSVDPAKIEA+T+WPRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL

Query:  GLAGYYRRFMEGCSRIANPLT
        GLAGYYRRF+E  SRIA+PLT
Subjt:  GLAGYYRRFMEGCSRIANPLT

A0A5A7UUX8 Reverse transcriptase

6.7e-141

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Query:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS
        MKASKLLSQGTW ILASV+  REPEVSLSSEPVVREYPDVF DELPGLPPPRE++FAIELEPGT PI   P +   AELKELKVQLQELLDKGFIRP+VS
Subjt:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS

Query:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL
        PW APVLFVKKKDGSMRLCIDYRELNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIPK  F  RYGHYEF+VMSFGLTN PA+F+
Subjt:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL

Query:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL
        DLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEHLHQ                      KVTFL HV S EGVSVDPAKIEA+T+WPRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL

Query:  GLAGYYRRFMEGCSRIANPLT
        GLAGYYRRF+E  SRIA+PLT
Subjt:  GLAGYYRRFMEGCSRIANPLT

A0A5D3BSV9 Reverse transcriptase

6.1e-142

81.93

Show/hide

Query:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS
        MKASKLLSQGTW ILASV+  REPEVSLSSEPVVREYPDVF DELPGLPPPRE++FAIELEPGT PI   P +   AELKELKVQLQELLDKGFIRP+VS
Subjt:  MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPI-EGPLQNGSAELKELKVQLQELLDKGFIRPNVS

Query:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL
        PW APVLFVKKKDGSMRLCIDYRELNKVTVKN YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPK  F  RYGHYEFIVMSFGLTNAPA+F+
Subjt:  PWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFL

Query:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL
        DLMNRVFKDFLD FVIVFIDDIL+YSKTEAEHEEHLHQ                      KVTFL HV S EGVSVDPAKIEA+T+WPRPSTVSEIRSFL
Subjt:  DLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHLHQ----------------------KVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFL

Query:  GLAGYYRRFMEGCSRIANPLT
        GLAGYYRRF+E  SRIA+PLT
Subjt:  GLAGYYRRFMEGCSRIANPLT

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

1.5e-44

37.25

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Query:  KELKVQLQELLDKGFIRPNVSPWEAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKI
        +E++ Q+Q++L++G IR + SP+ +P+  V KK+D S     R+ IDYR+LN++TV + +P+P +D++  +L     F+ IDL  G+HQ+ +    + K 
Subjt:  KELKVQLQELLDKGFIRPNVSPWEAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKI

Query:  VFHFRYGHYEFIVMSFGLTNAPAIFLDLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHE----------------------EHLHQKVTFLSHVDSIEGV
         F  ++GHYE++ M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH                       E L Q+ TFL HV + +G+
Subjt:  VFHFRYGHYEFIVMSFGLTNAPAIFLDLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHE----------------------EHLHQKVTFLSHVDSIEGV

Query:  SVDPAKIEAITSWPRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPLT
          +P KIEAI  +P P+   EI++FLGL GYYR+F+   + IA P+T
Subjt:  SVDPAKIEAITSWPRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPLT

P20825 Retrovirus-related Pol polyprotein from transposon 297

7.4e-44

36.18

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Query:  ELKVQLQELLDKGFIRPNVSPWEAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIV
        E++ Q+QE+L++G IR + SP+ +P   V KK         R+ IDYR+LN++T+ + YP+P +D++  +L     F+ IDL  G+HQ+ + +  I K  
Subjt:  ELKVQLQELLDKGFIRPNVSPWEAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIV

Query:  FHFRYGHYEFIVMSFGLTNAPAIFLDLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHE----------------------EHLHQKVTFLSHVDSIEGVS
        F  + GHYE++ M FGL NAPA F   MN + +  L+   +V++DDI+++S +  EH                       E L ++  FL H+ + +G+ 
Subjt:  FHFRYGHYEFIVMSFGLTNAPAIFLDLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHE----------------------EHLHQKVTFLSHVDSIEGVS

Query:  VDPAKIEAITSWPRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPLT
         +P K++AI S+P P+   EIR+FLGL GYYR+F+   + IA P+T
Subjt:  VDPAKIEAITSWPRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPLT

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

2.9e-48

35.44

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Query:  KASKLLSQGTWSILASVLVTREPEVSLSSEP---------VVREYPDVFLDELPGLPPPREIN-----FAIELEPGT-TPIEGPLQNGSAELKELKVQLQ
        +AS L   G +S + S + + EP  +  S           + ++Y ++  ++LP  P P +IN       IE++PG   P   P        +E+   +Q
Subjt:  KASKLLSQGTWSILASVLVTREPEVSLSSEP---------VVREYPDVFLDELPGLPPPREIN-----FAIELEPGT-TPIEGPLQNGSAELKELKVQLQ

Query:  ELLDKGFIRPNVSPWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIV
        +LLD  FI P+ SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  K  F    G YE+ V
Subjt:  ELLDKGFIRPNVSPWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIV

Query:  MSFGLTNAPAIFLDLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHL----------------------HQKVTFLSHVDSIEGVSVDPAKIEAITSW
        M FGL NAP+ F   M   F+D    FV V++DDIL++S++  EH +HL                       ++  FL +   I+ ++    K  AI  +
Subjt:  MSFGLTNAPAIFLDLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHL----------------------HQKVTFLSHVDSIEGVSVDPAKIEAITSW

Query:  PRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPL
        P P TV + + FLG+  YYRRF+  CS+IA P+
Subjt:  PRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

1.1e-42

32.31

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Query:  EYPDVFLDELPGLPPPREINFAIELEPGTT---PIEGPLQNGSAELK-ELKVQLQELLDKGFIRPNVSPWEAPVLFVKKK-----DGSMRLCIDYRELNK
        E+P +F   L G+     +  A++ E  T    PI          ++ E++ Q+ ELL  G IRP+ SP+ +P+  V KK     +   R+ +D++ LN 
Subjt:  EYPDVFLDELPGLPPPREINFAIELEPGTT---PIEGPLQNGSAELK-ELKVQLQELLDKGFIRPNVSPWEAPVLFVKKK-----DGSMRLCIDYRELNK

Query:  VTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFLDLMNRVFKDFLDMFVIVFIDDILMYS-
        VT+ + YP+P I+     L  A  F+ +DL SG+HQ+ +++SDIPK  F    G YEF+ + FGL NAPAIF  +++ + ++ +     V+IDDI+++S 
Subjt:  VTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFLDLMNRVFKDFLDMFVIVFIDDILMYS-

Query:  ---------------------KTEAEHEEHLHQKVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPLT
                             +   E    L  +V FL ++ + +G+  DP K+ AI+  P P++V E++ FLG+  YYR+F++  +++A PLT
Subjt:  ---------------------KTEAEHEEHLHQKVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPLT

Q99315 Transposon Ty3-G Gag-Pol polyprotein

2.9e-48

35.44

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Query:  KASKLLSQGTWSILASVLVTREPEVSLSSEP---------VVREYPDVFLDELPGLPPPREIN-----FAIELEPGT-TPIEGPLQNGSAELKELKVQLQ
        +AS L   G +S + S + + EP  +  S           + ++Y ++  ++LP  P P +IN       IE++PG   P   P        +E+   +Q
Subjt:  KASKLLSQGTWSILASVLVTREPEVSLSSEP---------VVREYPDVFLDELPGLPPPREIN-----FAIELEPGT-TPIEGPLQNGSAELKELKVQLQ

Query:  ELLDKGFIRPNVSPWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIV
        +LLD  FI P+ SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ +   D  K  F    G YE+ V
Subjt:  ELLDKGFIRPNVSPWEAPVLFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIV

Query:  MSFGLTNAPAIFLDLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHL----------------------HQKVTFLSHVDSIEGVSVDPAKIEAITSW
        M FGL NAP+ F   M   F+D    FV V++DDIL++S++  EH +HL                       ++  FL +   I+ ++    K  AI  +
Subjt:  MSFGLTNAPAIFLDLMNRVFKDFLDMFVIVFIDDILMYSKTEAEHEEHL----------------------HQKVTFLSHVDSIEGVSVDPAKIEAITSW

Query:  PRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPL
        P P TV + + FLG+  YYRRF+  CS+IA P+
Subjt:  PRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.8e-13

56.36

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Query:  HVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPLT
        H+ S EGVS DPAK+EA+  WP P   +E+R FLGL GYYRRF++   +I  PLT
Subjt:  HVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPLT

Sequences

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CDS sequence

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ATGAAGGCTAGTAAACTACTCAGCCAGGGTACCTGGAGCATCTTGGCAAGCGTATTAGTTACCAGAGAACCAGAAGTTTCCCTGTCTTCCGAACCAGTGGTAAGG
GAGTATCCCGATGTATTCCTTGACGAGCTTCCAGGACTTCCCCCTCCTAGGGAGATAAACTTCGCCATCGAGTTAGAGCCAGGCACTACTCCTATCGAGGGCCCT
TTACAGAATGGCTCTGCTGAGCTAAAGGAGTTGAAGGTGCAGTTGCAGGAGTTGCTGGACAAGGGTTTCATTCGACCCAATGTGTCACCTTGGGAAGCACCTGTG
TTGTTCGTGAAGAAGAAGGATGGGTCAATGCGCCTTTGCATTGACTACAGAGAGCTGAACAAGGTGACAGTTAAGAACCACTATCCCTTGCCCAGGATTGATGAT
TTGTTCGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATTGACCTACGATCAGGCTACCATCAGCTGAGGATCAGGGATAGTGATATTCCTAAGATCGTCTTC
CATTTCAGATACGGGCATTACGAGTTTATTGTGATGTCCTTTGGTTTGACTAATGCTCCTGCTATATTCTTGGACTTGATGAACAGGGTGTTTAAGGACTTCTTA
GACATGTTTGTTATAGTTTTCATTGATGACATTTTGATGTACTCCAAGACTGAGGCTGAGCATGAGGAGCATTTGCACCAGAAGGTGACTTTCCTCAGCCATGTG
GATTCTATTGAGGGAGTTTCTGTGGACCCAGCAAAGATCGAAGCGATTACCAGTTGGCCTCGACCATCTACAGTTAGCGAAATTCGTAGTTTCCTGGGTTTAGCA
GGTTACTACAGGAGGTTCATGGAAGGCTGCTCTCGTATAGCCAATCCCTTGACTTAG

mRNA sequence

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Protein sequence

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MKASKLLSQGTWSILASVLVTREPEVSLSSEPVVREYPDVFLDELPGLPPPREINFAIELEPGTTPIEGPLQNGSAELKELKVQLQELLDKGFIRPNVSPWEAPV
LFVKKKDGSMRLCIDYRELNKVTVKNHYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKIVFHFRYGHYEFIVMSFGLTNAPAIFLDLMNRVFKDFL
DMFVIVFIDDILMYSKTEAEHEEHLHQKVTFLSHVDSIEGVSVDPAKIEAITSWPRPSTVSEIRSFLGLAGYYRRFMEGCSRIANPLT

Cmc04g0108361 (gene) of Melon (Charmono) v1.1 genome