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Cmc04g0108391 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0108391
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPhotosystem II reaction center protein Z
Genome locationCMiso1.1chr04:27593174..27593362
RNA-Seq ExpressionCmc04g0108391
SyntenyCmc04g0108391
Gene Ontology termsGO:0042549 - photosystem II stabilization (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009539 - photosystem II reaction center (cellular component)
InterPro domainsIPR002644 - Photosystem II PsbZ, reaction centre
IPR036512 - Photosystem II PsbZ superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
YP_004841780.1 photosystem II protein Z [Cucumis melo subsp. melo]1.9e-2098.39Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS EGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

YP_009004041.1 photosystem II protein Z [Cucumis hystrix]4.3e-2096.77Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS +GWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

YP_009430624.1 photosystem II protein z [Gynostemma cardiospermum]5.7e-2095.16Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVP+VFAS +GWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

YP_009751987.1 photosystem II subunit Z [Cionosicys macranthus]5.7e-2095.16Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS +GWSGNKN+VFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

YP_010144251.1 photosystem II reaction center Z protein [Poikilospermum lanceolatum]5.7e-2095.16Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS +GWSGNKNVVFSGTSLWIGLVFL+GILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

TrEMBL top hitse value%identityAlignment
A0A1S4EU04 Photosystem II reaction center protein Z9.4e-2198.39Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS EGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

A0A249RXJ9 Photosystem II reaction center protein Z9.4e-2198.39Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS EGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

A0A249RZ13 Photosystem II reaction center protein Z9.4e-2198.39Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS EGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

A0A249RZC1 Photosystem II reaction center protein Z9.4e-2198.39Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS EGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

A0A286NG07 Photosystem II reaction center protein Z9.4e-2198.39Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS EGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

SwissProt top hitse value%identityAlignment
P56790 Photosystem II reaction center protein Z3.7e-2293.55Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALI+TSSILLISVPVVFAS +GWS NKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

Q09MI1 Photosystem II reaction center protein Z8.2e-2293.55Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALI TSSILLISVPVVFAS +GWS NKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

Q32902 Photosystem II reaction center protein Z2.8e-2295.16Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS +GWS NKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

Q4VZN6 Photosystem II reaction center protein Z5.7e-2396.77Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALIVTSSILLISVPVVFAS +GWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

Q9MTN5 Photosystem II reaction center protein Z6.3e-2293.55Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALI TSS+LLISVPVVFAS EGWS NKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS

Arabidopsis top hitse value%identityAlignment
ATCG00300.1 YCF92.6e-2393.55Show/hide
Query:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS
        MTIAFQLAVFALI+TSSILLISVPVVFAS +GWS NKNVVFSGTSLWIGLVFLVGILNSLIS
Subjt:  MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTGTTACTTCATCAATCTTACTAATTAGTGTGCCCGTTGTATTTGCTTCTCTTGAAGGTTGGTCGGGTAACAA
AAATGTTGTATTTTCCGGTACATCATTATGGATTGGATTAGTCTTTCTGGTTGGTATCCTTAATTCTCTTATCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTATTGCTTTCCAATTGGCTGTTTTTGCATTAATTGTTACTTCATCAATCTTACTAATTAGTGTGCCCGTTGTATTTGCTTCTCTTGAAGGTTGGTCGGGTAACAA
AAATGTTGTATTTTCCGGTACATCATTATGGATTGGATTAGTCTTTCTGGTTGGTATCCTTAATTCTCTTATCTCTTGA
Protein sequenceShow/hide protein sequence
MTIAFQLAVFALIVTSSILLISVPVVFASLEGWSGNKNVVFSGTSLWIGLVFLVGILNSLIS