CuGenDBv2

Gene ID	Cmc04g0108421
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr04:27637467..27638156
RNA-Seq Expression	Cmc04g0108421
Synteny	Cmc04g0108421
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.5e-129

99.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG
        RRNLEFQVGDQVFLKLSPWRGVIRFG+KG
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.5e-129

99.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG
        RRNLEFQVGDQVFLKLSPWRGVIRFG+KG
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG

KAA0059912.1 reverse transcriptase [Cucumis melo var. makuwa]

2.5e-129

99.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG
        RRNLEFQVGDQVFLKLSPWRGVIRFG+KG
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG

KAA0061889.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]

2.5e-129

99.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG
        RRNLEFQVGDQVFLKLSPWRGVIRFG+KG
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG

TYK05214.1 reverse transcriptase [Cucumis melo var. makuwa]

2.5e-129

99.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG
        RRNLEFQVGDQVFLKLSPWRGVIRFG+KG
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1Y5 Reverse transcriptase

1.2e-129

99.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG
        RRNLEFQVGDQVFLKLSPWRGVIRFG+KG
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG

A0A5A7U2V7 Reverse transcriptase

1.2e-129

99.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG
        RRNLEFQVGDQVFLKLSPWRGVIRFG+KG
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG

A0A5A7UUL6 Reverse transcriptase

1.2e-129

99.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG
        RRNLEFQVGDQVFLKLSPWRGVIRFG+KG
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG

A0A5D3BHI1 Reverse transcriptase

1.2e-129

99.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG
        RRNLEFQVGDQVFLKLSPWRGVIRFG+KG
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG

A0A5D3BS67 Reverse transcriptase

1.2e-129

99.56

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
        TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKR

Query:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG
        RRNLEFQVGDQVFLKLSPWRGVIRFG+KG
Subjt:  RRNLEFQVGDQVFLKLSPWRGVIRFGKKG

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

4.4e-28

32.72

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  ++++ +G P  I++D D  FTS+ W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK
        T QT+E +LR        +W  H+ L++ +YNN   S+  M P+E ++   P  +P+      ++     E  Q T    + ++E+L     + K Y D 
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK

Query:  RRRNL-EFQVGDQVFLK
        + + + EFQ GD V +K
Subjt:  RRRNL-EFQVGDQVFLK

P0CT41 Transposon Tf2-12 polyprotein

4.4e-28

32.72

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  ++++ +G P  I++D D  FTS+ W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK
        T QT+E +LR        +W  H+ L++ +YNN   S+  M P+E ++   P  +P+      ++     E  Q T    + ++E+L     + K Y D 
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK

Query:  RRRNL-EFQVGDQVFLK
        + + + EFQ GD V +K
Subjt:  RRRNL-EFQVGDQVFLK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

3.6e-30

37.96

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDF+ GLP TS+  + I V+VDR +K   FI  + T    QL  L    I S +G P +I SDRD R T+  +  L K +G     S++ HPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCW--NEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYAD
        TIQTL  +LRA V     +W  +LP +EF YN+    ++G +P+E   G    TP     +EV  R     EL +         +E L  AQ   ++  +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCW--NEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYAD

Query:  KRRRNLEFQVGDQVFL
        +RR+ L   +GD V +
Subjt:  KRRRNLEFQVGDQVFL

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.0e-29

37.5

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDF+ GLP TS+  + I V+VDR +K   FI  + T    QL  L    I S +G P +I SDRD R T+  +  L K +G     S++ HPQTDGQSER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCW--NEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYAD
        TIQTL  +LRA       +W  +LP +EF YN+    ++G +P+E   G    TP     +EV  R     EL +         +E L  AQ   ++  +
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCW--NEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYAD

Query:  KRRRNLEFQVGDQVFL
        +RR+ L   +GD V +
Subjt:  KRRRNLEFQVGDQVFL

Q9UR07 Transposon Tf2-11 polyprotein

4.4e-28

32.72

Show/hide

Query:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER
        MDF+  LP  SSG++ ++V+VDR +K    +P   + T +Q AR++  ++++ +G P  I++D D  FTS+ W          +KFS  + PQTDGQ+ER
Subjt:  MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSER

Query:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK
        T QT+E +LR        +W  H+ L++ +YNN   S+  M P+E ++   P  +P+      ++     E  Q T    + ++E+L     + K Y D 
Subjt:  TIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYG-RPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADK

Query:  RRRNL-EFQVGDQVFLK
        + + + EFQ GD V +K
Subjt:  RRRNL-EFQVGDQVFLK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATTTTCTATTTGGATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGATTAAAATGACATC
TACGTTAGACCAGCTAGCGAGATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGC
CTAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGA
GCATGTGTCCTACAACTTAAAGGAAGTTGGGATACCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGGCACCATATGAAGCCTT
ATACGGGAGACCATGCAGAACTCCTGTGTGCTGGAATGAAGTGGGAGAGCGGAAGTTAGTAGGTCCTGAGTTGGTTCAGATTACGACAAACAATATTAAGTTGATCAGAG
AAAATCTGAGGAAAGCCCAAGATCGACAGAAAAGTTATGCGGATAAGCGACGAAGAAACCTAGAATTCCAAGTTGGAGATCAAGTTTTCTTGAAATTATCTCCATGGCGA
GGTGTTATTCGTTTCGGAAAAAAAGGTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLR
ACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRPCRTPVCWNEVGERKLVGPELVQITTNNIKLIRENLRKAQDRQKSYADKRRRNLEFQVGDQVFLKLSPWR
GVIRFGKKG

Cmc04g0108421 (gene) of Melon (Charmono) v1.1 genome