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Cmc04g0108511 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc04g0108511
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPectin lyase-like superfamily protein
Genome locationCMiso1.1chr04:28051377..28051878
RNA-Seq ExpressionCmc04g0108511
SyntenyCmc04g0108511
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045593.1 exopolygalacturonase-like [Cucumis melo var. makuwa]2.8e-4486.24Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLGKYSK K
Subjt:  SLGKYSKGK

KAA0045594.1 exopolygalacturonase-like [Cucumis melo var. makuwa]2.8e-4486.24Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLGKYSK K
Subjt:  SLGKYSKGK

KAA0045610.1 exopolygalacturonase-like [Cucumis melo var. makuwa]2.8e-4486.24Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLGKYSK K
Subjt:  SLGKYSKGK

XP_008466933.1 PREDICTED: polygalacturonase-like, partial [Cucumis melo]2.8e-4486.24Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLGKYSK K
Subjt:  SLGKYSKGK

XP_016903689.1 PREDICTED: exopolygalacturonase-like, partial [Cucumis melo]2.8e-4486.24Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLGKYSK K
Subjt:  SLGKYSKGK

TrEMBL top hitse value%identityAlignment
A0A1S4E643 exopolygalacturonase-like1.4e-4486.24Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLGKYSK K
Subjt:  SLGKYSKGK

A0A5A7TR51 Exopolygalacturonase-like1.4e-4486.24Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLGKYSK K
Subjt:  SLGKYSKGK

A0A5A7TRZ0 Exopolygalacturonase-like1.4e-4486.24Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLGKYSK K
Subjt:  SLGKYSKGK

A0A5D3BWP4 Exopolygalacturonase-like1.4e-4486.24Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLGKYSK K
Subjt:  SLGKYSKGK

A0A5D3DYI3 Exopolygalacturonase-like1.4e-4486.24Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNLK NF+TNSIV DITSLDSKNYHINLLGCKNLTFDHVTITA GNSPN DGIH  SSEQINILNTNI  GDDCISVGDTNKQ+VI+DVTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLGKYSK K
Subjt:  SLGKYSKGK

SwissProt top hitse value%identityAlignment
P24548 Exopolygalacturonase (Fragment)2.7e-2957.14Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNL+   +TNSI+ D+T+LDSKN+H+N++GCKNLTF+   I+A   S N DGIH G S+ +NI+NT I  GDDCIS+GD +K I I ++TCG G+GIS+ 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKY
        SLG+Y
Subjt:  SLGKY

Q39766 Polygalacturonase2.3e-2854.29Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        +N++F+F+TN+++ DITS DSK +HIN+  CKN+T + + I A   SPN DGIH G SE +NI+ ++I  GDDCIS+GD  K +VI ++TCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKY
        SLGK+
Subjt:  SLGKY

Q39786 Polygalacturonase3.0e-2854.29Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        +N++F+F+TN+++ DITS DSK +HIN+  CKN+T + + I A   SPN DGIH G SE +NI+ ++I  GDDCIS+GD  K +VI ++TCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKY
        SLGK+
Subjt:  SLGKY

Q40312 Polygalacturonase7.5e-3259.43Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MN  FNF+ NSIV  +TS DSKN+H+ + GCKN+TFD  TITA G+SPN DGIH G S  + ILNTNI  GDDC+S+GD +KQI +  V CG G+G+S+ 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYS
        SLGK++
Subjt:  SLGKYS

Q6H9K0 Exopolygalacturonase (Fragment)8.6e-2854.13Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        MNL+F+F+ +++V DITSL+SK +HIN+L C+++TF HVT+TA G S N DGIH G S+ + I NT I  GDDCIS+G  ++ + I  V CG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYSKGK
        SLG+Y+  K
Subjt:  SLGKYSKGK

Arabidopsis top hitse value%identityAlignment
AT3G07820.1 Pectin lyase-like superfamily protein1.5e-2753.33Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        ++++F+FI NS + DI+S+D+KN+HIN+LG KN+T +++ I A  +SPN DGIH G S+ + ILN+ I  GDDCISVGD  K + +  VTCG G+GIS+ 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKY
        SLG+Y
Subjt:  SLGKY

AT3G07830.1 Pectin lyase-like superfamily protein6.8e-2850.48Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        ++++F+F+TN+ + DI+S+D+KN+HIN++G KN+TFD+V I A   SPN DGIH G S  ++I+N+ I  GDDC+SVGD    +++ +V CG G+GIS+ 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKY
        SLG+Y
Subjt:  SLGKY

AT3G07840.1 Pectin lyase-like superfamily protein8.0e-2953.33Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        ++++F+F+ N+ + DI+S+D+KN+HIN+LG KN+TFD+V + A   SPN DGIH G SE + ILN+ I  GDDCISVGD  K + + +V CG G+GIS+ 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKY
        SLG+Y
Subjt:  SLGKY

AT3G07850.1 Pectin lyase-like superfamily protein2.3e-2345.71Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        +N++F  +TNS +  ITS +SK +H+N+L CKN+T   + I A   S N DGIH G S  +N++   I  GDDC+S+GD  + +++ +V CG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKY
        SLG+Y
Subjt:  SLGKY

AT5G48140.1 Pectin lyase-like superfamily protein1.2e-2752.83Show/hide
Query:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR
        ++++F+F+T++ +  ITSLD+K++HIN++G KN+TF+ V I A   SPN DGIH G S+ I I+N+ I  GDDC+SVGD  K +++  VTCG G+GISI 
Subjt:  MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIR

Query:  SLGKYS
        SLG+YS
Subjt:  SLGKYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTTGAAGTTCAATTTCATCACGAATTCAATAGTGACGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACCTTTGA
CCACGTGACAATTACTGCTATGGGGAATAGTCCCAACATTGATGGAATTCACGGGGGTAGTTCAGAACAGATTAACATTCTCAATACCAATATCGTAATTGGAGATGATT
GTATATCCGTGGGAGATACCAACAAACAAATAGTTATTAATGATGTTACTTGCGGACTAGGATATGGAATTAGCATACGAAGTTTGGGAAAATATAGCAAGGGAAAAAGA
AGTGGTAGGAGTGATGGTGAAAAAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTTGAAGTTCAATTTCATCACGAATTCAATAGTGACGGACATAACGTCATTGGATAGCAAGAATTATCATATTAATCTTTTGGGTTGCAAGAATCTTACCTTTGA
CCACGTGACAATTACTGCTATGGGGAATAGTCCCAACATTGATGGAATTCACGGGGGTAGTTCAGAACAGATTAACATTCTCAATACCAATATCGTAATTGGAGATGATT
GTATATCCGTGGGAGATACCAACAAACAAATAGTTATTAATGATGTTACTTGCGGACTAGGATATGGAATTAGCATACGAAGTTTGGGAAAATATAGCAAGGGAAAAAGA
AGTGGTAGGAGTGATGGTGAAAAAATGTAA
Protein sequenceShow/hide protein sequence
MNLKFNFITNSIVTDITSLDSKNYHINLLGCKNLTFDHVTITAMGNSPNIDGIHGGSSEQINILNTNIVIGDDCISVGDTNKQIVINDVTCGLGYGISIRSLGKYSKGKR
SGRSDGEKM